Wall clock time and date at job start Sun Mar 29 2020 22:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.53397 * 2 1 4 4 C 1.53118 * 109.50277 * 120.09713 * 2 1 3 5 5 C 1.53121 * 109.15950 * 177.59716 * 4 2 1 6 6 C 1.53034 * 109.27944 * 302.34509 * 5 4 2 7 7 H 1.08999 * 109.46677 * 299.17674 * 6 5 4 8 8 C 1.52998 * 109.46484 * 179.19409 * 6 5 4 9 9 N 1.46853 * 109.52060 * 59.17874 * 6 5 4 10 10 C 1.46902 * 110.99494 * 174.16077 * 9 6 5 11 11 C 1.52999 * 109.47353 * 73.79126 * 10 9 6 12 12 H 1.08999 * 109.47311 * 53.90898 * 11 10 9 13 13 O 1.42901 * 109.46836 * 293.91272 * 11 10 9 14 14 C 1.50697 * 109.47304 * 173.91314 * 11 10 9 15 15 H 1.08006 * 119.99844 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00071 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00183 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00144 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47317 * 89.99750 * 18 16 14 20 20 H 1.48503 * 109.47137 * 209.99850 * 18 16 14 21 21 H 1.48507 * 109.46699 * 329.99451 * 18 16 14 22 22 C 1.46843 * 111.20061 * 298.26069 * 9 6 5 23 23 H 1.09000 * 109.47033 * 299.90216 * 1 2 3 24 24 H 1.08996 * 109.47132 * 59.90046 * 1 2 3 25 25 H 1.08997 * 109.47216 * 179.90222 * 1 2 3 26 26 H 1.08999 * 109.52824 * 297.50150 * 4 2 1 27 27 H 1.08998 * 109.52248 * 57.69585 * 4 2 1 28 28 H 1.08999 * 109.50242 * 62.28806 * 5 4 2 29 29 H 1.09003 * 109.50321 * 182.36756 * 5 4 2 30 30 H 1.09003 * 109.46795 * 52.79401 * 8 6 5 31 31 H 1.08999 * 109.47134 * 172.78616 * 8 6 5 32 32 H 1.08999 * 109.46993 * 292.79436 * 8 6 5 33 33 H 1.09002 * 109.46787 * 193.78939 * 10 9 6 34 34 H 1.09000 * 109.47533 * 313.78422 * 10 9 6 35 35 H 0.96701 * 113.99897 * 300.00365 * 13 11 10 36 36 H 0.96995 * 120.00133 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.45737 * 301.72405 * 22 9 6 38 38 H 1.08998 * 109.46547 * 181.76015 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2108 6 6 4.0230 -1.4729 -0.0723 7 1 3.6374 -2.4923 -0.0844 8 6 5.5517 -1.5055 -0.1243 9 7 3.5092 -0.7420 -1.2379 10 6 4.0373 -1.3058 -2.4874 11 6 3.3471 -2.6403 -2.7766 12 1 2.2662 -2.4996 -2.7683 13 8 3.7113 -3.5918 -1.7746 14 6 3.7775 -3.1457 -4.1295 15 1 4.4741 -2.5725 -4.7234 16 6 3.2829 -4.3401 -4.6085 17 7 2.4358 -5.0387 -3.8846 18 14 3.8170 -4.9670 -6.2852 19 1 5.0272 -5.8142 -6.1345 20 1 2.7217 -5.7706 -6.8852 21 1 4.1265 -3.8143 -7.1690 22 6 2.0410 -0.7233 -1.2480 23 1 -0.3633 0.5123 0.8909 24 1 -0.3633 0.5154 -0.8891 25 1 -0.3633 -1.0276 -0.0018 26 1 1.7157 -0.1871 2.1398 27 1 1.6453 -1.7391 1.2689 28 1 3.9677 0.2433 1.2298 29 1 3.9396 -1.3228 2.0762 30 1 5.9376 -1.9345 0.8004 31 1 5.8737 -2.1142 -0.9693 32 1 5.9330 -0.4910 -0.2410 33 1 3.8472 -0.6132 -3.3073 34 1 5.1109 -1.4659 -2.3886 35 1 4.6610 -3.7666 -1.7249 36 1 2.0881 -5.8792 -4.2215 37 1 1.6648 -1.7464 -1.2544 38 1 1.6905 -0.2022 -2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929757328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:40 Heat of formation + Delta-G solvation = -65.410602 kcal Electronic energy + Delta-G solvation = -17172.800075 eV Core-core repulsion = 14628.394452 eV Total energy + Delta-G solvation = -2544.405623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19933 -35.83183 -33.59823 -32.18779 -32.09702 -28.52858 -28.01061 -25.28961 -24.10196 -22.84585 -20.86536 -20.08212 -18.74895 -16.97163 -15.33824 -14.79439 -14.60916 -14.47258 -14.09958 -13.96824 -13.62169 -13.13279 -12.63502 -12.42674 -12.16475 -11.90042 -11.42963 -11.27940 -11.21747 -11.11409 -10.94530 -10.83904 -10.51801 -10.36904 -10.19948 -9.91976 -9.80822 -9.65124 -9.33415 -8.57386 -8.49107 -7.05302 -5.99795 -4.18993 3.26537 3.33828 3.36718 4.37817 4.62546 5.08841 5.22858 5.24038 5.25981 5.44089 5.72141 5.83602 5.88281 5.91662 6.00726 6.04723 6.06069 6.15320 6.25695 6.27826 6.35322 6.39213 6.42037 6.44710 6.57733 6.59878 6.67534 6.74818 6.94310 7.03817 7.63386 7.74645 7.85303 7.97683 8.23076 8.84083 9.34250 9.57204 11.02738 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.007932 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.983015 B = 3529.309239 C = 3905.914963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.110 4.110 6 C 0.066 3.934 7 H 0.078 0.922 8 C -0.142 4.142 9 N -0.534 5.534 10 C 0.021 3.979 11 C 0.197 3.803 12 H 0.060 0.940 13 O -0.561 6.561 14 C -0.571 4.571 15 H 0.055 0.945 16 C 0.079 3.921 17 N -0.860 5.860 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.058 3.942 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.342 0.658 36 H 0.259 0.741 37 H 0.048 0.952 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 7.833 8.245 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.042 4.042 7 H 0.095 0.905 8 C -0.199 4.199 9 N -0.257 5.257 10 C -0.107 4.107 11 C 0.139 3.861 12 H 0.078 0.922 13 O -0.364 6.364 14 C -0.610 4.610 15 H 0.074 0.926 16 C -0.127 4.127 17 N -0.496 5.496 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.070 4.070 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.029 8.168 8.397 11.715 hybrid contribution 0.557 -1.216 -1.299 1.865 sum 0.586 6.952 7.098 9.953 Atomic orbital electron populations 1.21789 0.95628 1.01803 1.01091 1.21149 0.94573 0.99797 0.95137 0.91209 1.21609 0.95998 1.00418 0.97081 1.21622 0.95352 1.00681 0.97106 1.21801 0.94566 0.97972 0.89867 0.90474 1.21870 0.95574 1.01417 1.01076 1.62316 1.07247 1.53432 1.02750 1.23066 0.99686 0.97756 0.90168 1.20036 0.95789 0.83546 0.86726 0.92248 1.86535 1.26211 1.65354 1.58337 1.21666 1.28923 1.06889 1.03500 0.92647 1.25047 0.94179 0.96678 0.96792 1.70072 1.29333 1.13705 1.36502 0.86698 0.78347 0.78952 0.84530 1.20574 1.21172 1.19829 1.22080 0.88603 0.99575 0.96771 0.93105 0.92803 0.92681 0.92772 0.92207 0.92166 0.92471 0.93158 0.92292 0.92887 0.91595 0.91358 0.81405 0.93082 0.93414 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.20 37.16 0.34 -1.56 16 2 C -0.09 -1.30 2.88 -90.54 -0.26 -1.56 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.11 -1.62 5.29 -26.61 -0.14 -1.76 16 5 C -0.11 -1.60 5.37 -26.65 -0.14 -1.75 16 6 C 0.07 1.13 1.90 -67.72 -0.13 1.00 16 7 H 0.08 1.55 5.72 -51.93 -0.30 1.25 16 8 C -0.14 -2.18 8.56 37.16 0.32 -1.86 16 9 N -0.53 -9.87 4.69 -226.69 -1.06 -10.94 16 10 C 0.02 0.43 4.96 -3.82 -0.02 0.41 16 11 C 0.20 4.89 2.36 -27.88 -0.07 4.83 16 12 H 0.06 1.64 6.07 -51.93 -0.32 1.33 16 13 O -0.56 -13.94 9.83 -35.23 -0.35 -14.29 16 14 C -0.57 -15.62 8.76 -34.44 -0.30 -15.92 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.08 2.21 5.40 -17.82 -0.10 2.12 16 17 N -0.86 -25.41 12.84 55.43 0.71 -24.69 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.06 1.05 3.85 -3.84 -0.01 1.04 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.96 5.66 -51.93 -0.29 0.66 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.37 5.64 -51.93 -0.29 1.08 16 35 H 0.34 7.76 8.23 45.56 0.37 8.14 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 38 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -29.04 288.23 -7.66 -36.70 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.77 Total: 7.68 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.51 Total: -15.01 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.35 Total: -35.63 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.35 Total: -14.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.04 -7.66 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929757328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.715 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds