Wall clock time and date at job start Sun Mar 29 2020 22:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.53397 * 2 1 4 4 C 1.53118 * 109.50277 * 120.09713 * 2 1 3 5 5 C 1.53121 * 109.15950 * 177.59716 * 4 2 1 6 6 C 1.53034 * 109.27944 * 302.34509 * 5 4 2 7 7 H 1.08999 * 109.46677 * 299.17674 * 6 5 4 8 8 C 1.52998 * 109.46484 * 179.19409 * 6 5 4 9 9 N 1.46853 * 109.52060 * 59.17874 * 6 5 4 10 10 C 1.46902 * 110.99494 * 174.16077 * 9 6 5 11 11 C 1.52999 * 109.47353 * 73.79126 * 10 9 6 12 12 H 1.08999 * 109.47311 * 53.90898 * 11 10 9 13 13 O 1.42901 * 109.46836 * 293.91272 * 11 10 9 14 14 C 1.50697 * 109.47304 * 173.91314 * 11 10 9 15 15 H 1.08006 * 119.99844 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00071 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00183 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00144 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47317 * 89.99750 * 18 16 14 20 20 H 1.48503 * 109.47137 * 209.99850 * 18 16 14 21 21 H 1.48507 * 109.46699 * 329.99451 * 18 16 14 22 22 C 1.46843 * 111.20061 * 298.26069 * 9 6 5 23 23 H 1.09000 * 109.47033 * 299.90216 * 1 2 3 24 24 H 1.08996 * 109.47132 * 59.90046 * 1 2 3 25 25 H 1.08997 * 109.47216 * 179.90222 * 1 2 3 26 26 H 1.08999 * 109.52824 * 297.50150 * 4 2 1 27 27 H 1.08998 * 109.52248 * 57.69585 * 4 2 1 28 28 H 1.08999 * 109.50242 * 62.28806 * 5 4 2 29 29 H 1.09003 * 109.50321 * 182.36756 * 5 4 2 30 30 H 1.09003 * 109.46795 * 52.79401 * 8 6 5 31 31 H 1.08999 * 109.47134 * 172.78616 * 8 6 5 32 32 H 1.08999 * 109.46993 * 292.79436 * 8 6 5 33 33 H 1.09002 * 109.46787 * 193.78939 * 10 9 6 34 34 H 1.09000 * 109.47533 * 313.78422 * 10 9 6 35 35 H 0.96701 * 113.99897 * 300.00365 * 13 11 10 36 36 H 0.96995 * 120.00133 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.45737 * 301.72405 * 22 9 6 38 38 H 1.08998 * 109.46547 * 181.76015 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2108 6 6 4.0230 -1.4729 -0.0723 7 1 3.6374 -2.4923 -0.0844 8 6 5.5517 -1.5055 -0.1243 9 7 3.5092 -0.7420 -1.2379 10 6 4.0373 -1.3058 -2.4874 11 6 3.3471 -2.6403 -2.7766 12 1 2.2662 -2.4996 -2.7683 13 8 3.7113 -3.5918 -1.7746 14 6 3.7775 -3.1457 -4.1295 15 1 4.4741 -2.5725 -4.7234 16 6 3.2829 -4.3401 -4.6085 17 7 2.4358 -5.0387 -3.8846 18 14 3.8170 -4.9670 -6.2852 19 1 5.0272 -5.8142 -6.1345 20 1 2.7217 -5.7706 -6.8852 21 1 4.1265 -3.8143 -7.1690 22 6 2.0410 -0.7233 -1.2480 23 1 -0.3633 0.5123 0.8909 24 1 -0.3633 0.5154 -0.8891 25 1 -0.3633 -1.0276 -0.0018 26 1 1.7157 -0.1871 2.1398 27 1 1.6453 -1.7391 1.2689 28 1 3.9677 0.2433 1.2298 29 1 3.9396 -1.3228 2.0762 30 1 5.9376 -1.9345 0.8004 31 1 5.8737 -2.1142 -0.9693 32 1 5.9330 -0.4910 -0.2410 33 1 3.8472 -0.6132 -3.3073 34 1 5.1109 -1.4659 -2.3886 35 1 4.6610 -3.7666 -1.7249 36 1 2.0881 -5.8792 -4.2215 37 1 1.6648 -1.7464 -1.2544 38 1 1.6905 -0.2022 -2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929757328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:40 Heat of formation + Delta-G solvation = -85.604694 kcal Electronic energy + Delta-G solvation = -17173.675757 eV Core-core repulsion = 14628.394452 eV Total energy + Delta-G solvation = -2545.281305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66961 -37.57867 -35.06364 -34.21991 -33.62230 -29.95297 -29.63509 -27.05362 -25.49274 -24.40870 -22.49065 -21.43769 -20.20105 -19.04375 -16.80034 -16.69899 -16.51711 -15.92486 -15.64772 -15.39951 -15.14305 -14.69387 -14.29138 -13.68988 -13.55364 -13.35499 -13.06799 -12.85342 -12.79992 -12.52609 -12.50321 -12.43898 -12.18074 -11.97920 -11.56911 -11.48282 -11.29675 -11.07137 -10.90960 -10.70642 -10.46758 -8.77739 -8.11763 -6.40956 1.37466 1.38093 1.48988 2.36649 3.09233 3.16892 3.86602 4.00486 4.02351 4.16758 4.19059 4.45945 4.52755 4.62089 4.66869 4.72722 4.73757 4.81491 4.91051 4.94655 5.01221 5.06529 5.13379 5.16553 5.21545 5.31885 5.34720 5.37221 5.48712 5.57985 5.67627 5.73418 6.00263 6.32101 6.43939 6.72600 7.30364 7.49859 8.88329 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.007932 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.983015 B = 3529.309239 C = 3905.914963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.105 4.105 6 C 0.062 3.938 7 H 0.043 0.957 8 C -0.136 4.136 9 N -0.525 5.525 10 C 0.035 3.965 11 C 0.203 3.797 12 H 0.023 0.977 13 O -0.570 6.570 14 C -0.587 4.587 15 H 0.058 0.942 16 C 0.025 3.975 17 N -0.900 5.900 18 Si 0.958 3.042 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.060 3.940 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.350 0.650 36 H 0.260 0.740 37 H 0.008 0.992 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 9.067 8.929 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.046 4.046 7 H 0.061 0.939 8 C -0.194 4.194 9 N -0.248 5.248 10 C -0.094 4.094 11 C 0.145 3.855 12 H 0.041 0.959 13 O -0.374 6.374 14 C -0.625 4.625 15 H 0.077 0.923 16 C -0.177 4.177 17 N -0.537 5.537 18 Si 0.783 3.217 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.068 4.068 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.960 9.416 9.087 13.121 hybrid contribution 0.255 -1.599 -1.478 2.192 sum 1.215 7.818 7.609 10.977 Atomic orbital electron populations 1.21769 0.94304 1.01349 1.02548 1.21135 0.95702 0.99716 0.93505 0.90047 1.21623 0.95850 0.99704 0.97833 1.21607 0.95526 1.01157 0.95964 1.21874 0.95796 0.96376 0.90547 0.93863 1.21821 0.94037 1.01845 1.01660 1.62415 1.07310 1.52765 1.02320 1.22811 0.99846 0.95298 0.91396 1.19858 0.94129 0.85505 0.86043 0.95948 1.86508 1.26960 1.65796 1.58151 1.22088 1.28703 1.07090 1.04638 0.92337 1.25902 0.94127 0.96980 1.00680 1.70216 1.30774 1.14179 1.38562 0.85587 0.77974 0.78449 0.79736 1.19748 1.21020 1.18944 1.22080 0.88449 0.97686 0.98605 0.90469 0.92537 0.94098 0.89813 0.94038 0.90965 0.90671 0.91011 0.93684 0.91981 0.92092 0.90311 0.80495 0.93143 0.97388 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.20 71.98 0.66 -2.87 16 2 C -0.08 -2.33 2.88 -10.74 -0.03 -2.36 16 3 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 4 C -0.11 -2.99 5.29 30.67 0.16 -2.83 16 5 C -0.10 -2.81 5.37 30.65 0.16 -2.64 16 6 C 0.06 2.08 1.90 44.94 0.09 2.17 16 7 H 0.04 1.77 5.72 -2.39 -0.01 1.76 16 8 C -0.14 -3.95 8.56 71.98 0.62 -3.33 16 9 N -0.52 -19.35 4.69 -871.12 -4.09 -23.44 16 10 C 0.03 1.46 4.96 86.30 0.43 1.88 16 11 C 0.20 10.42 2.36 29.85 0.07 10.49 16 12 H 0.02 1.33 6.07 -2.39 -0.01 1.31 16 13 O -0.57 -29.32 9.83 -148.98 -1.46 -30.78 16 14 C -0.59 -32.59 8.76 25.60 0.22 -32.36 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C 0.03 1.44 5.40 84.65 0.46 1.89 16 17 N -0.90 -54.50 12.84 21.44 0.28 -54.22 16 18 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.06 2.24 3.85 86.32 0.33 2.57 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.41 5.66 -2.39 -0.01 1.40 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.08 3.13 5.64 -2.39 -0.01 3.12 16 35 H 0.35 16.30 8.23 -74.06 -0.61 15.70 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.01 0.36 6.44 -2.39 -0.02 0.34 16 38 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 Total: -1.00 -63.17 288.23 0.33 -62.83 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.42 Total: 27.12 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 3.17 Total: -27.39 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -3.81 Total: -77.66 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.46 Total: -30.78 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.17 0.33 -62.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929757328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.771 kcal (2) G-P(sol) polarization free energy of solvation -63.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds