Wall clock time and date at job start Sun Mar 29 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 H 1.08999 * 110.45592 * 305.88818 * 3 2 1 5 5 C 1.54374 * 110.41166 * 68.30746 * 3 2 1 6 6 C 1.54261 * 105.06030 * 142.63427 * 5 3 2 7 7 H 1.09003 * 110.32313 * 241.10062 * 6 5 3 8 8 C 1.53002 * 110.32342 * 118.89466 * 6 5 3 9 9 C 1.54379 * 105.06070 * 359.97438 * 6 5 3 10 10 N 1.48559 * 104.59352 * 336.14816 * 9 6 5 11 11 C 1.46896 * 111.00075 * 159.04433 * 10 9 6 12 12 C 1.52995 * 109.47431 * 76.41622 * 11 10 9 13 13 H 1.08993 * 109.47014 * 60.00309 * 12 11 10 14 14 O 1.42904 * 109.47078 * 300.00121 * 12 11 10 15 15 C 1.50702 * 109.47220 * 180.02562 * 12 11 10 16 16 H 1.08003 * 119.99799 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00299 * 179.72552 * 15 12 11 18 18 N 1.31513 * 120.00477 * 179.97438 * 17 15 12 19 19 Si 1.86808 * 119.99685 * 359.97438 * 17 15 12 20 20 H 1.48493 * 109.47312 * 90.00008 * 19 17 15 21 21 H 1.48496 * 109.46870 * 210.00084 * 19 17 15 22 22 H 1.48502 * 109.47137 * 329.99775 * 19 17 15 23 23 H 1.09004 * 109.47202 * 174.59281 * 1 2 3 24 24 H 1.08998 * 109.47424 * 294.59244 * 1 2 3 25 25 H 1.09001 * 109.46660 * 54.59415 * 1 2 3 26 26 H 1.09000 * 109.47603 * 239.99221 * 2 1 3 27 27 H 1.09005 * 109.47188 * 119.99613 * 2 1 3 28 28 H 1.09001 * 110.32961 * 23.73189 * 5 3 2 29 29 H 1.09002 * 110.32519 * 261.52709 * 5 3 2 30 30 H 1.08994 * 109.46917 * 302.90486 * 8 6 5 31 31 H 1.09002 * 109.47411 * 62.90798 * 8 6 5 32 32 H 1.09004 * 109.46940 * 182.90753 * 8 6 5 33 33 H 1.09003 * 110.40773 * 217.37351 * 9 6 5 34 34 H 1.08997 * 110.41355 * 94.92799 * 9 6 5 35 35 H 1.09010 * 109.46822 * 316.41440 * 11 10 9 36 36 H 1.08999 * 109.47586 * 196.42183 * 11 10 9 37 37 H 0.96704 * 114.00173 * 299.99829 * 14 12 11 38 38 H 0.96998 * 120.00296 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 2.0012 -0.8274 5 6 1.7153 2.1284 1.3444 6 6 2.9368 3.0217 1.6439 7 1 3.4111 2.7144 2.5760 8 6 2.5151 4.4905 1.7200 9 6 3.8970 2.7998 0.4556 10 7 3.5233 1.4671 -0.0839 11 6 3.9744 1.3164 -1.4737 12 6 5.4810 1.0514 -1.4951 13 1 5.6970 0.1374 -0.9420 14 8 6.1664 2.1487 -0.8882 15 6 5.9439 0.8974 -2.9210 16 1 5.2342 0.9799 -3.7310 17 6 7.2741 0.6563 -3.1919 18 7 7.6779 0.5215 -4.4362 19 14 8.5028 0.5212 -1.7913 20 1 8.5935 -0.8928 -1.3470 21 1 9.8361 0.9804 -2.2566 22 1 8.0555 1.3688 -0.6569 23 1 -0.3634 -1.0231 -0.0968 24 1 -0.3634 0.4277 0.9344 25 1 -0.3633 0.5954 -0.8376 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.5900 1.3827 2.1294 29 1 0.8154 2.7364 1.2516 30 1 2.0316 4.7784 0.7866 31 1 1.8182 4.6261 2.5471 32 1 3.3951 5.1133 1.8806 33 1 4.9316 2.7945 0.7989 34 1 3.7504 3.5709 -0.3007 35 1 3.7583 2.2305 -2.0269 36 1 3.4516 0.4795 -1.9368 37 1 6.0196 2.9966 -1.3293 38 1 8.6138 0.3522 -4.6267 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929764740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:10 Heat of formation + Delta-G solvation = -62.166734 kcal Electronic energy + Delta-G solvation = -16745.308785 eV Core-core repulsion = 14201.043826 eV Total energy + Delta-G solvation = -2544.264959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23810 -36.08495 -33.71189 -32.51150 -32.20359 -28.88114 -27.76699 -25.92019 -24.29942 -22.55657 -20.52928 -20.12022 -19.39292 -17.21467 -15.68692 -15.22660 -14.73597 -14.58669 -14.31254 -13.96804 -13.48408 -13.20010 -12.94674 -12.73015 -12.46334 -12.22985 -11.92991 -11.56465 -11.44175 -11.28558 -10.98091 -10.82134 -10.59496 -10.41111 -10.32637 -10.19834 -10.11257 -9.90690 -8.98703 -8.58992 -8.24450 -7.82200 -6.09728 -4.20730 3.43641 3.52336 3.79805 4.39642 4.57934 4.80274 4.87459 5.12891 5.18831 5.24900 5.33063 5.47181 5.53416 5.64135 5.69461 5.72748 5.86895 5.92078 5.93350 6.03011 6.07828 6.10498 6.12194 6.18355 6.29220 6.38810 6.47547 6.52771 6.59987 6.75160 7.30936 7.46124 7.54759 7.78733 8.31583 8.86111 9.06473 9.55574 11.00943 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.007718 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.243762 B = 3626.961423 C = 4179.076055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.058 3.942 4 H 0.044 0.956 5 C -0.112 4.112 6 C -0.103 4.103 7 H 0.074 0.926 8 C -0.142 4.142 9 C 0.043 3.957 10 N -0.503 5.503 11 C 0.031 3.969 12 C 0.203 3.797 13 H 0.061 0.939 14 O -0.577 6.577 15 C -0.564 4.564 16 H 0.070 0.930 17 C 0.083 3.917 18 N -0.895 5.895 19 Si 0.873 3.127 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.215 1.215 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.350 0.650 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 4.331 11.373 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.050 4.050 4 H 0.062 0.938 5 C -0.150 4.150 6 C -0.122 4.122 7 H 0.093 0.907 8 C -0.199 4.199 9 C -0.085 4.085 10 N -0.227 5.227 11 C -0.097 4.097 12 C 0.146 3.854 13 H 0.079 0.921 14 O -0.382 6.382 15 C -0.602 4.602 16 H 0.088 0.912 17 C -0.121 4.121 18 N -0.532 5.532 19 Si 0.700 3.300 20 H -0.215 1.215 21 H -0.225 1.225 22 H -0.138 1.138 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.196 0.804 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.558 3.390 11.958 16.972 hybrid contribution 0.106 0.849 -0.634 1.064 sum -11.452 4.238 11.324 16.654 Atomic orbital electron populations 1.21759 0.96202 1.01302 1.01403 1.21446 0.94585 0.95954 1.02781 1.22689 0.90082 0.95869 0.96395 0.93842 1.22419 0.97233 0.98275 0.97119 1.21963 0.96040 0.94671 0.99514 0.90728 1.21841 1.00971 0.95880 1.01223 1.23288 1.00517 0.89721 0.95003 1.65371 1.07527 1.29267 1.20506 1.22968 0.99980 1.00020 0.86705 1.19727 0.85676 0.86802 0.93241 0.92140 1.86704 1.73873 1.18793 1.58826 1.21525 0.95022 1.51944 0.91722 0.91234 1.24993 0.98746 0.92584 0.95783 1.69963 1.16605 1.47639 1.19032 0.86996 0.78999 0.78924 0.85083 1.21465 1.22481 1.13778 0.92877 0.92952 0.93077 0.91760 0.91410 0.91430 0.92007 0.92968 0.92990 0.92620 0.88441 0.94601 0.95324 0.91099 0.80437 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.70 37.16 0.36 -1.25 16 2 C -0.11 -1.48 5.57 -26.73 -0.15 -1.63 16 3 C 0.06 0.85 2.29 -66.06 -0.15 0.70 16 4 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 5 C -0.11 -1.40 5.52 -25.35 -0.14 -1.54 16 6 C -0.10 -1.33 3.65 -89.24 -0.33 -1.66 16 7 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 8 C -0.14 -1.53 8.90 37.16 0.33 -1.20 16 9 C 0.04 0.68 4.91 -2.18 -0.01 0.67 16 10 N -0.50 -8.82 5.01 -222.12 -1.11 -9.94 16 11 C 0.03 0.63 4.57 -3.83 -0.02 0.61 16 12 C 0.20 4.81 2.59 -27.88 -0.07 4.74 16 13 H 0.06 1.53 7.58 -51.93 -0.39 1.13 16 14 O -0.58 -12.94 7.44 -35.23 -0.26 -13.20 16 15 C -0.56 -15.82 9.34 -34.44 -0.32 -16.14 16 16 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 17 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 19 Si 0.87 22.20 26.99 -169.99 -4.59 17.61 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 22 H -0.22 -5.33 5.29 56.52 0.30 -5.03 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.95 7.20 -51.93 -0.37 0.58 16 27 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 28 H 0.07 0.81 7.77 -51.93 -0.40 0.41 16 29 H 0.06 0.68 7.71 -51.93 -0.40 0.28 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.71 6.63 -51.93 -0.34 1.36 16 34 H 0.04 0.57 7.44 -51.93 -0.39 0.18 16 35 H 0.03 0.58 7.72 -51.92 -0.40 0.18 16 36 H 0.07 1.44 7.09 -51.93 -0.37 1.08 16 37 H 0.35 7.09 8.97 45.56 0.41 7.49 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -30.35 292.39 -7.47 -37.82 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.09 Total: 4.52 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.59 Total: -14.38 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.34 Total: -36.77 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.26 Total: -13.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.59 Total: 17.61 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.35 -7.47 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929764740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.346 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds