Wall clock time and date at job start Sun Mar 29 2020 21:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46666 * 2 1 4 4 H 1.08993 * 110.37388 * 56.80800 * 3 2 1 5 5 C 1.54383 * 110.40876 * 294.45398 * 3 2 1 6 6 C 1.54267 * 105.06094 * 217.37326 * 5 3 2 7 7 H 1.08995 * 110.32562 * 118.89548 * 6 5 3 8 8 C 1.53001 * 110.32139 * 241.10730 * 6 5 3 9 9 C 1.54378 * 105.05990 * 359.97438 * 6 5 3 10 10 N 1.48561 * 110.40969 * 179.28954 * 3 2 1 11 11 C 1.46902 * 110.99742 * 277.81275 * 10 3 2 12 12 C 1.52993 * 109.47376 * 164.52570 * 11 10 3 13 13 H 1.09004 * 109.46854 * 60.00597 * 12 11 10 14 14 O 1.42897 * 109.47299 * 300.00473 * 12 11 10 15 15 C 1.50707 * 109.47161 * 180.02562 * 12 11 10 16 16 H 1.07993 * 119.99877 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99691 * 180.02562 * 15 12 11 18 18 N 1.31507 * 120.00294 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99850 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47346 * 59.99395 * 19 17 15 21 21 H 1.48492 * 109.47423 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46807 * 299.99933 * 19 17 15 23 23 H 1.08991 * 109.47130 * 65.44052 * 1 2 3 24 24 H 1.09006 * 109.46661 * 185.44143 * 1 2 3 25 25 H 1.08996 * 109.47182 * 305.43251 * 1 2 3 26 26 H 1.08993 * 109.47181 * 239.99870 * 2 1 3 27 27 H 1.09001 * 109.47273 * 119.99694 * 2 1 3 28 28 H 1.09000 * 110.32596 * 336.26528 * 5 3 2 29 29 H 1.09000 * 110.32519 * 98.47652 * 5 3 2 30 30 H 1.08996 * 109.47358 * 59.99951 * 8 6 5 31 31 H 1.08998 * 109.46928 * 180.02562 * 8 6 5 32 32 H 1.09009 * 109.46913 * 299.99675 * 8 6 5 33 33 H 1.09002 * 110.41066 * 142.63181 * 9 6 5 34 34 H 1.09000 * 110.41605 * 264.95686 * 9 6 5 35 35 H 1.09003 * 109.47084 * 284.53153 * 11 10 3 36 36 H 1.09003 * 109.47055 * 44.52697 * 11 10 3 37 37 H 0.96699 * 114.00040 * 299.99386 * 14 12 11 38 38 H 0.96998 * 120.00458 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6390 1.9867 0.8550 5 6 1.6546 2.1497 -1.3171 6 6 2.8615 3.0482 -1.6577 7 1 3.2928 2.7560 -2.6150 8 6 2.4372 4.5178 -1.6909 9 6 3.8742 2.8088 -0.5173 10 7 3.5252 1.4670 0.0173 11 6 4.0387 1.2949 1.3828 12 6 5.5260 0.9408 1.3276 13 1 6.0725 1.7436 0.8325 14 8 5.6995 -0.2748 0.5967 15 6 6.0526 0.7636 2.7285 16 1 5.3923 0.8905 3.5736 17 6 7.3774 0.4395 2.9312 18 7 8.1813 0.2846 1.9021 19 14 8.0299 0.2192 4.6676 20 1 7.2858 -0.8752 5.3409 21 1 9.4738 -0.1232 4.6141 22 1 7.8490 1.4818 5.4283 23 1 -0.3633 0.4271 -0.9346 24 1 -0.3633 -1.0231 0.0975 25 1 -0.3633 0.5958 0.8373 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.4936 1.4166 -2.1075 29 1 0.7600 2.7557 -1.1738 30 1 2.0442 4.8048 -0.7156 31 1 3.2993 5.1394 -1.9329 32 1 1.6658 4.6562 -2.4486 33 1 4.8923 2.8093 -0.9067 34 1 3.7633 3.5693 0.2556 35 1 3.9063 2.2222 1.9403 36 1 3.4922 0.4922 1.8780 37 1 5.2396 -1.0338 0.9809 38 1 9.1132 0.0562 2.0446 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929764741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:12 Heat of formation + Delta-G solvation = -66.605399 kcal Electronic energy + Delta-G solvation = -16614.939370 eV Core-core repulsion = 14070.481937 eV Total energy + Delta-G solvation = -2544.457434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.11765 -35.59636 -33.64072 -32.48218 -31.99237 -28.63492 -27.40460 -25.91139 -24.25694 -22.59906 -20.71740 -19.81488 -19.31994 -16.88805 -15.59626 -15.14997 -14.58137 -14.46423 -14.04740 -13.85370 -13.40460 -13.07444 -12.93561 -12.72524 -12.34301 -12.09942 -11.74796 -11.36685 -11.27680 -11.05477 -10.87390 -10.77904 -10.67523 -10.48246 -10.36888 -10.13055 -10.08595 -9.97866 -8.95628 -8.52263 -8.07361 -7.65797 -5.95403 -4.13992 3.31016 3.36322 3.37897 4.36232 4.52782 4.84646 4.92375 5.19402 5.24268 5.31839 5.37937 5.52441 5.59113 5.68825 5.74209 5.75921 5.94420 5.96972 6.05493 6.11352 6.14578 6.16576 6.21921 6.32977 6.40021 6.51576 6.54019 6.58501 6.70274 6.89702 7.44974 7.69415 7.82010 7.94758 8.26485 8.90205 9.52155 9.69424 11.08624 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.006839 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.329270 B = 4093.388717 C = 4535.084539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.059 3.941 4 H 0.041 0.959 5 C -0.112 4.112 6 C -0.099 4.099 7 H 0.076 0.924 8 C -0.142 4.142 9 C 0.040 3.960 10 N -0.492 5.492 11 C 0.020 3.980 12 C 0.242 3.758 13 H 0.051 0.949 14 O -0.553 6.553 15 C -0.575 4.575 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.888 3.112 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.340 0.660 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 3.843 -5.093 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.050 4.050 4 H 0.059 0.941 5 C -0.150 4.150 6 C -0.118 4.118 7 H 0.095 0.905 8 C -0.200 4.200 9 C -0.088 4.088 10 N -0.216 5.216 11 C -0.108 4.108 12 C 0.184 3.816 13 H 0.069 0.931 14 O -0.354 6.354 15 C -0.614 4.614 16 H 0.071 0.929 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.183 0.817 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.434 3.772 -5.858 14.253 hybrid contribution -0.221 0.282 2.051 2.082 sum -12.655 4.054 -3.807 13.823 Atomic orbital electron populations 1.21765 0.96348 1.01205 1.01341 1.21419 0.94342 0.95952 1.02858 1.22670 0.90208 0.95828 0.96313 0.94112 1.22415 0.97062 0.98117 0.97376 1.21900 0.95811 0.94632 0.99481 0.90543 1.21854 1.00934 0.95853 1.01324 1.23165 0.99544 0.90296 0.95799 1.65431 1.06191 1.27408 1.22523 1.23265 1.01238 0.99340 0.86930 1.19208 0.86405 0.85017 0.90970 0.93096 1.86566 1.75741 1.18643 1.54452 1.21651 0.95340 1.51513 0.92874 0.92915 1.25018 0.96859 0.94215 0.96501 1.70072 1.05034 1.44853 1.29450 0.86756 0.77914 0.78630 0.85158 1.20163 1.21181 1.20262 0.92933 0.92932 0.93212 0.91195 0.91938 0.91323 0.92045 0.92947 0.92650 0.92893 0.90150 0.94391 0.95400 0.92075 0.81691 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.66 37.16 0.36 -1.31 16 2 C -0.11 -1.52 5.55 -26.73 -0.15 -1.67 16 3 C 0.06 0.90 2.30 -66.07 -0.15 0.75 16 4 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 5 C -0.11 -1.46 5.38 -25.34 -0.14 -1.60 16 6 C -0.10 -1.36 3.66 -89.23 -0.33 -1.69 16 7 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 8 C -0.14 -1.61 8.92 37.16 0.33 -1.28 16 9 C 0.04 0.69 5.66 -2.17 -0.01 0.68 16 10 N -0.49 -9.26 4.85 -222.11 -1.08 -10.34 16 11 C 0.02 0.43 4.42 -3.83 -0.02 0.42 16 12 C 0.24 6.31 2.95 -27.88 -0.08 6.23 16 13 H 0.05 1.47 7.77 -51.93 -0.40 1.07 16 14 O -0.55 -14.84 12.59 -35.23 -0.44 -15.28 16 15 C -0.58 -16.11 8.76 -34.44 -0.30 -16.42 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 18 N -0.86 -25.88 12.84 55.43 0.71 -25.17 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.05 0.54 7.63 -51.93 -0.40 0.14 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 27 H 0.06 0.95 7.25 -51.93 -0.38 0.58 16 28 H 0.07 0.87 7.81 -51.93 -0.41 0.47 16 29 H 0.06 0.71 7.71 -51.93 -0.40 0.31 16 30 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.08 1.52 8.01 -51.93 -0.42 1.10 16 34 H 0.04 0.65 7.37 -51.93 -0.38 0.27 16 35 H 0.03 0.60 7.65 -51.93 -0.40 0.20 16 36 H 0.06 1.28 7.07 -51.93 -0.37 0.91 16 37 H 0.34 8.24 9.04 45.56 0.41 8.65 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -30.43 302.01 -7.90 -38.34 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.04 Total: 5.17 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.58 Total: -13.70 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.37 Total: -35.51 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.44 Total: -15.28 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.43 -7.90 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929764741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.270 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds