Wall clock time and date at job start Sun Mar 29 2020 21:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46666 * 2 1 4 4 H 1.08993 * 110.37388 * 56.80800 * 3 2 1 5 5 C 1.54383 * 110.40876 * 294.45398 * 3 2 1 6 6 C 1.54267 * 105.06094 * 217.37326 * 5 3 2 7 7 H 1.08995 * 110.32562 * 118.89548 * 6 5 3 8 8 C 1.53001 * 110.32139 * 241.10730 * 6 5 3 9 9 C 1.54378 * 105.05990 * 359.97438 * 6 5 3 10 10 N 1.48561 * 110.40969 * 179.28954 * 3 2 1 11 11 C 1.46902 * 110.99742 * 277.81275 * 10 3 2 12 12 C 1.52993 * 109.47376 * 164.52570 * 11 10 3 13 13 H 1.09004 * 109.46854 * 60.00597 * 12 11 10 14 14 O 1.42897 * 109.47299 * 300.00473 * 12 11 10 15 15 C 1.50707 * 109.47161 * 180.02562 * 12 11 10 16 16 H 1.07993 * 119.99877 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99691 * 180.02562 * 15 12 11 18 18 N 1.31507 * 120.00294 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99850 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47346 * 59.99395 * 19 17 15 21 21 H 1.48492 * 109.47423 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46807 * 299.99933 * 19 17 15 23 23 H 1.08991 * 109.47130 * 65.44052 * 1 2 3 24 24 H 1.09006 * 109.46661 * 185.44143 * 1 2 3 25 25 H 1.08996 * 109.47182 * 305.43251 * 1 2 3 26 26 H 1.08993 * 109.47181 * 239.99870 * 2 1 3 27 27 H 1.09001 * 109.47273 * 119.99694 * 2 1 3 28 28 H 1.09000 * 110.32596 * 336.26528 * 5 3 2 29 29 H 1.09000 * 110.32519 * 98.47652 * 5 3 2 30 30 H 1.08996 * 109.47358 * 59.99951 * 8 6 5 31 31 H 1.08998 * 109.46928 * 180.02562 * 8 6 5 32 32 H 1.09009 * 109.46913 * 299.99675 * 8 6 5 33 33 H 1.09002 * 110.41066 * 142.63181 * 9 6 5 34 34 H 1.09000 * 110.41605 * 264.95686 * 9 6 5 35 35 H 1.09003 * 109.47084 * 284.53153 * 11 10 3 36 36 H 1.09003 * 109.47055 * 44.52697 * 11 10 3 37 37 H 0.96699 * 114.00040 * 299.99386 * 14 12 11 38 38 H 0.96998 * 120.00458 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6390 1.9867 0.8550 5 6 1.6546 2.1497 -1.3171 6 6 2.8615 3.0482 -1.6577 7 1 3.2928 2.7560 -2.6150 8 6 2.4372 4.5178 -1.6909 9 6 3.8742 2.8088 -0.5173 10 7 3.5252 1.4670 0.0173 11 6 4.0387 1.2949 1.3828 12 6 5.5260 0.9408 1.3276 13 1 6.0725 1.7436 0.8325 14 8 5.6995 -0.2748 0.5967 15 6 6.0526 0.7636 2.7285 16 1 5.3923 0.8905 3.5736 17 6 7.3774 0.4395 2.9312 18 7 8.1813 0.2846 1.9021 19 14 8.0299 0.2192 4.6676 20 1 7.2858 -0.8752 5.3409 21 1 9.4738 -0.1232 4.6141 22 1 7.8490 1.4818 5.4283 23 1 -0.3633 0.4271 -0.9346 24 1 -0.3633 -1.0231 0.0975 25 1 -0.3633 0.5958 0.8373 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.4936 1.4166 -2.1075 29 1 0.7600 2.7557 -1.1738 30 1 2.0442 4.8048 -0.7156 31 1 3.2993 5.1394 -1.9329 32 1 1.6658 4.6562 -2.4486 33 1 4.8923 2.8093 -0.9067 34 1 3.7633 3.5693 0.2556 35 1 3.9063 2.2222 1.9403 36 1 3.4922 0.4922 1.8780 37 1 5.2396 -1.0338 0.9809 38 1 9.1132 0.0562 2.0446 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929764741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:11 Heat of formation + Delta-G solvation = -88.294933 kcal Electronic energy + Delta-G solvation = -16615.879899 eV Core-core repulsion = 14070.481937 eV Total energy + Delta-G solvation = -2545.397962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45117 -37.58267 -34.72432 -34.27030 -33.88598 -30.21265 -28.82216 -27.33208 -25.86925 -23.91921 -22.35564 -21.31131 -20.51135 -18.99028 -16.86392 -16.66585 -16.56673 -16.20944 -15.75987 -15.12715 -15.00844 -14.54338 -14.10520 -13.90722 -13.82796 -13.28946 -13.16513 -12.90053 -12.84935 -12.67141 -12.58859 -12.29076 -12.03421 -11.90229 -11.70299 -11.63647 -11.33583 -11.21587 -11.01517 -10.70739 -10.10669 -9.22925 -8.13685 -6.40876 1.39087 1.41356 1.49650 2.37580 3.09876 3.13772 3.65778 3.76668 4.05150 4.12788 4.28820 4.36353 4.38023 4.46536 4.55606 4.60193 4.64914 4.71955 4.78788 4.82562 4.91838 5.00090 5.03529 5.13564 5.22513 5.24472 5.27014 5.40958 5.45056 5.49520 5.58564 5.73723 6.01162 6.15770 6.24996 6.73003 7.33548 7.61584 8.90729 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.006839 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.329270 B = 4093.388717 C = 4535.084539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.056 3.944 4 H 0.041 0.959 5 C -0.103 4.103 6 C -0.094 4.094 7 H 0.075 0.925 8 C -0.136 4.136 9 C 0.036 3.964 10 N -0.511 5.511 11 C 0.041 3.959 12 C 0.243 3.757 13 H 0.012 0.988 14 O -0.569 6.569 15 C -0.592 4.592 16 H 0.058 0.942 17 C 0.025 3.975 18 N -0.900 5.900 19 Si 0.962 3.038 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.268 1.268 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.350 0.650 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 4.128 -4.737 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.052 4.052 4 H 0.059 0.941 5 C -0.141 4.141 6 C -0.113 4.113 7 H 0.093 0.907 8 C -0.194 4.194 9 C -0.093 4.093 10 N -0.235 5.235 11 C -0.088 4.088 12 C 0.185 3.815 13 H 0.029 0.971 14 O -0.371 6.371 15 C -0.630 4.630 16 H 0.076 0.924 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.194 0.806 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.445 4.060 -5.501 15.981 hybrid contribution 0.407 0.188 1.890 1.943 sum -14.038 4.249 -3.611 15.105 Atomic orbital electron populations 1.21704 0.93619 1.02189 1.02350 1.21408 0.96652 0.94766 1.01554 1.22803 0.87567 0.97032 0.97787 0.94067 1.22412 0.97499 0.98181 0.96036 1.21882 0.95025 0.96723 0.97637 0.90661 1.21814 1.01646 0.93731 1.02192 1.23186 0.99324 0.89645 0.97096 1.65338 1.08986 1.28530 1.20596 1.22815 0.98117 0.99088 0.88748 1.19043 0.89054 0.83747 0.89627 0.97052 1.86504 1.76404 1.19376 1.54860 1.22042 0.95895 1.51215 0.93833 0.92376 1.25930 0.97116 0.93694 1.00974 1.70224 1.05371 1.46039 1.32070 0.85584 0.77199 0.79018 0.79602 1.19044 1.20853 1.19341 0.91449 0.91944 0.92719 0.92084 0.93710 0.90548 0.89419 0.92851 0.92634 0.90522 0.93073 0.94598 0.95797 0.91642 0.80572 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.66 71.98 0.70 -2.06 16 2 C -0.11 -2.85 5.55 30.60 0.17 -2.68 16 3 C 0.06 1.65 2.30 45.06 0.10 1.75 16 4 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 5 C -0.10 -2.43 5.38 31.49 0.17 -2.26 16 6 C -0.09 -2.44 3.66 -9.90 -0.04 -2.47 16 7 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 8 C -0.14 -2.76 8.92 71.98 0.64 -2.12 16 9 C 0.04 1.25 5.66 86.44 0.49 1.74 16 10 N -0.51 -19.41 4.85 -856.64 -4.16 -23.57 16 11 C 0.04 1.78 4.42 86.30 0.38 2.17 16 12 C 0.24 13.15 2.95 29.85 0.09 13.24 16 13 H 0.01 0.71 7.77 -2.38 -0.02 0.69 16 14 O -0.57 -31.53 12.59 -148.98 -1.88 -33.40 16 15 C -0.59 -33.66 8.76 25.60 0.22 -33.44 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.03 1.45 5.40 84.66 0.46 1.91 16 18 N -0.90 -55.53 12.84 21.45 0.28 -55.25 16 19 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.07 1.13 7.63 -2.39 -0.02 1.12 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.74 8.07 -2.39 -0.02 1.72 16 27 H 0.04 1.34 7.25 -2.39 -0.02 1.32 16 28 H 0.08 1.71 7.81 -2.39 -0.02 1.69 16 29 H 0.09 1.65 7.71 -2.39 -0.02 1.63 16 30 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 2.05 8.01 -2.39 -0.02 2.03 16 34 H 0.04 1.25 7.37 -2.39 -0.02 1.24 16 35 H 0.02 1.04 7.65 -2.39 -0.02 1.02 16 36 H 0.07 2.76 7.07 -2.39 -0.02 2.74 16 37 H 0.35 17.42 9.04 -74.06 -0.67 16.75 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -66.29 302.01 -0.01 -66.29 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.34 Total: 23.97 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.38 Total: -24.23 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -3.88 Total: -78.82 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.88 Total: -33.40 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -66.29 -0.01 -66.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929764741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.000 kcal (2) G-P(sol) polarization free energy of solvation -66.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds