Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46803 * 2 1 4 4 H 1.08999 * 110.42455 * 57.31580 * 3 2 1 5 5 C 1.54904 * 110.37276 * 179.62808 * 3 2 1 6 6 C 1.55141 * 101.65351 * 155.89742 * 5 3 2 7 7 H 1.09002 * 110.85230 * 82.80111 * 6 5 3 8 8 C 1.53005 * 110.70604 * 205.96333 * 6 5 3 9 9 C 1.54316 * 103.01958 * 324.34667 * 6 5 3 10 10 N 1.47436 * 107.23513 * 22.28318 * 9 6 5 11 11 C 1.46896 * 111.00141 * 123.25668 * 10 9 6 12 12 C 1.53001 * 109.47230 * 69.87605 * 11 10 9 13 13 H 1.08998 * 109.47065 * 59.99662 * 12 11 10 14 14 O 1.42908 * 109.46829 * 300.00177 * 12 11 10 15 15 C 1.50697 * 109.46995 * 180.02562 * 12 11 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 12 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 12 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 H 1.09002 * 109.47316 * 60.00011 * 1 2 3 24 24 H 1.09007 * 109.47085 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47312 * 300.00066 * 1 2 3 26 26 H 1.08994 * 109.46764 * 240.00364 * 2 1 3 27 27 H 1.08992 * 109.47247 * 120.00032 * 2 1 3 28 28 H 1.09001 * 110.98787 * 37.80664 * 5 3 2 29 29 H 1.09003 * 111.02221 * 274.00592 * 5 3 2 30 30 H 1.08998 * 109.46954 * 175.05627 * 8 6 5 31 31 H 1.09001 * 109.47109 * 295.05496 * 8 6 5 32 32 H 1.08993 * 109.46999 * 55.05261 * 8 6 5 33 33 H 1.09001 * 109.88486 * 262.87426 * 9 6 5 34 34 H 1.09002 * 109.88953 * 141.68887 * 9 6 5 35 35 H 1.08998 * 109.47372 * 309.87455 * 11 10 9 36 36 H 1.09006 * 109.47513 * 189.87627 * 11 10 9 37 37 H 0.96704 * 113.99704 * 299.99964 * 14 12 11 38 38 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6466 1.9850 0.8597 5 6 3.5887 1.4670 0.0094 6 6 3.8840 2.8574 -0.6123 7 1 3.8203 3.6413 0.1424 8 6 5.2576 2.8680 -1.2861 9 6 2.7614 3.0155 -1.6593 10 7 1.6592 2.1230 -1.2562 11 6 0.4078 2.8741 -1.0896 12 6 -0.0940 3.3391 -2.4582 13 1 -0.2726 2.4717 -3.0936 14 8 0.8891 4.1800 -3.0654 15 6 -1.3774 4.1101 -2.2872 16 1 -1.7960 4.2502 -1.3016 17 6 -2.0201 4.6322 -3.3897 18 7 -1.5101 4.4620 -4.5899 19 14 -3.6151 5.5814 -3.1785 20 1 -3.9747 5.6309 -1.7387 21 1 -3.4407 6.9632 -3.6935 22 1 -4.6981 4.9039 -3.9358 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9956 0.6678 -0.6102 29 1 3.9746 1.4043 1.0269 30 1 5.4075 3.8227 -1.7903 31 1 6.0330 2.7294 -0.5326 32 1 5.3109 2.0596 -2.0152 33 1 3.1299 2.7283 -2.6441 34 1 2.4142 4.0486 -1.6776 35 1 0.5864 3.7415 -0.4542 36 1 -0.3421 2.2327 -0.6264 37 1 1.0984 4.9733 -2.5535 38 1 -1.9620 4.8297 -5.3655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929764743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = -61.749913 kcal Electronic energy + Delta-G solvation = -16856.442726 eV Core-core repulsion = 14312.195842 eV Total energy + Delta-G solvation = -2544.246884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17852 -35.66127 -33.70678 -32.18958 -31.74963 -28.97988 -27.71978 -25.45069 -24.15300 -22.54775 -20.51694 -20.06829 -19.19380 -16.93201 -16.03432 -14.88630 -14.57608 -14.40317 -14.06592 -13.44023 -13.21288 -13.12938 -12.87862 -12.53271 -12.38136 -12.08797 -11.71873 -11.37032 -11.25103 -10.97410 -10.86435 -10.81596 -10.64000 -10.43109 -10.35605 -10.12951 -9.93692 -9.85421 -8.89744 -8.54008 -7.97640 -7.56400 -5.96990 -4.15172 3.28060 3.36335 3.39530 4.37606 4.59372 4.85068 4.94538 5.15716 5.29847 5.47129 5.51915 5.57134 5.66863 5.73395 5.84596 5.94801 6.03396 6.05336 6.11599 6.20832 6.24499 6.28152 6.32754 6.40704 6.42526 6.64516 6.67563 6.71908 6.77606 7.00613 7.65573 7.77664 7.80724 8.01276 8.26513 8.88979 9.42989 9.62294 11.06952 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.007620 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.140571 B = 3673.898155 C = 4290.694581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C 0.067 3.933 4 H 0.045 0.955 5 C -0.119 4.119 6 C -0.122 4.122 7 H 0.067 0.933 8 C -0.136 4.136 9 C 0.061 3.939 10 N -0.518 5.518 11 C 0.020 3.980 12 C 0.237 3.763 13 H 0.061 0.939 14 O -0.558 6.558 15 C -0.572 4.572 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.857 5.857 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.338 0.662 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 -4.934 8.860 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.042 4.042 4 H 0.063 0.937 5 C -0.157 4.157 6 C -0.142 4.142 7 H 0.085 0.915 8 C -0.194 4.194 9 C -0.067 4.067 10 N -0.242 5.242 11 C -0.107 4.107 12 C 0.179 3.821 13 H 0.079 0.921 14 O -0.361 6.361 15 C -0.611 4.611 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.493 5.493 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.093 0.907 37 H 0.182 0.818 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.838 -5.752 7.804 13.119 hybrid contribution -0.927 1.609 1.217 2.220 sum 7.911 -4.142 9.021 12.693 Atomic orbital electron populations 1.21900 0.95911 1.00920 1.02631 1.21405 0.96189 0.95465 1.00998 1.22600 0.93881 0.95447 0.92223 0.93697 1.22785 0.95491 0.97307 1.00114 1.22505 0.96251 0.97015 0.98409 0.91502 1.21694 0.95704 1.01937 1.00062 1.22931 0.89345 0.96948 0.97491 1.63475 1.03327 1.29189 1.28188 1.23334 0.90699 0.95261 1.01440 1.19350 0.85304 0.90444 0.87025 0.92109 1.86652 1.61531 1.35868 1.52055 1.21695 1.08912 1.37177 0.93304 0.92801 1.25027 0.96874 0.95520 0.95212 1.70101 1.38032 1.43236 0.97925 0.86649 0.83856 0.79829 0.78229 1.19794 1.20947 1.20878 0.90601 0.93566 0.93606 0.91519 0.92855 0.90886 0.91923 0.92645 0.93319 0.92480 0.90824 0.91714 0.96348 0.90748 0.81839 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.72 37.16 0.32 -1.99 16 2 C -0.10 -1.44 5.66 -26.73 -0.15 -1.59 16 3 C 0.07 1.03 2.58 -66.18 -0.17 0.86 16 4 H 0.04 0.71 7.81 -51.93 -0.41 0.30 16 5 C -0.12 -1.57 5.94 -24.59 -0.15 -1.72 16 6 C -0.12 -1.69 3.54 -88.79 -0.31 -2.01 16 7 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.14 -1.62 9.13 37.16 0.34 -1.28 16 9 C 0.06 1.06 5.11 -2.84 -0.01 1.04 16 10 N -0.52 -9.59 4.62 -223.39 -1.03 -10.62 16 11 C 0.02 0.43 3.90 -3.83 -0.01 0.41 16 12 C 0.24 6.04 3.09 -27.88 -0.09 5.96 16 13 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 14 O -0.56 -14.22 10.34 -35.23 -0.36 -14.59 16 15 C -0.57 -15.82 8.76 -34.44 -0.30 -16.12 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 18 N -0.86 -25.56 12.83 55.43 0.71 -24.85 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.08 1.33 6.00 -51.93 -0.31 1.02 16 24 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.07 1.38 7.82 -51.93 -0.41 0.98 16 34 H 0.06 1.20 5.20 -51.93 -0.27 0.93 16 35 H 0.02 0.39 7.96 -51.93 -0.41 -0.03 16 36 H 0.07 1.54 5.29 -51.93 -0.27 1.26 16 37 H 0.34 7.77 7.92 45.56 0.36 8.13 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -29.56 293.89 -7.81 -37.37 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.90 Total: 6.26 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.63 Total: -14.28 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.32 Total: -35.47 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.36 Total: -14.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.56 -7.81 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929764743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.378 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds