Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46803 * 2 1 4 4 H 1.08999 * 110.42455 * 57.31580 * 3 2 1 5 5 C 1.54904 * 110.37276 * 179.62808 * 3 2 1 6 6 C 1.55141 * 101.65351 * 155.89742 * 5 3 2 7 7 H 1.09002 * 110.85230 * 82.80111 * 6 5 3 8 8 C 1.53005 * 110.70604 * 205.96333 * 6 5 3 9 9 C 1.54316 * 103.01958 * 324.34667 * 6 5 3 10 10 N 1.47436 * 107.23513 * 22.28318 * 9 6 5 11 11 C 1.46896 * 111.00141 * 123.25668 * 10 9 6 12 12 C 1.53001 * 109.47230 * 69.87605 * 11 10 9 13 13 H 1.08998 * 109.47065 * 59.99662 * 12 11 10 14 14 O 1.42908 * 109.46829 * 300.00177 * 12 11 10 15 15 C 1.50697 * 109.46995 * 180.02562 * 12 11 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 12 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 12 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 H 1.09002 * 109.47316 * 60.00011 * 1 2 3 24 24 H 1.09007 * 109.47085 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47312 * 300.00066 * 1 2 3 26 26 H 1.08994 * 109.46764 * 240.00364 * 2 1 3 27 27 H 1.08992 * 109.47247 * 120.00032 * 2 1 3 28 28 H 1.09001 * 110.98787 * 37.80664 * 5 3 2 29 29 H 1.09003 * 111.02221 * 274.00592 * 5 3 2 30 30 H 1.08998 * 109.46954 * 175.05627 * 8 6 5 31 31 H 1.09001 * 109.47109 * 295.05496 * 8 6 5 32 32 H 1.08993 * 109.46999 * 55.05261 * 8 6 5 33 33 H 1.09001 * 109.88486 * 262.87426 * 9 6 5 34 34 H 1.09002 * 109.88953 * 141.68887 * 9 6 5 35 35 H 1.08998 * 109.47372 * 309.87455 * 11 10 9 36 36 H 1.09006 * 109.47513 * 189.87627 * 11 10 9 37 37 H 0.96704 * 113.99704 * 299.99964 * 14 12 11 38 38 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6466 1.9850 0.8597 5 6 3.5887 1.4670 0.0094 6 6 3.8840 2.8574 -0.6123 7 1 3.8203 3.6413 0.1424 8 6 5.2576 2.8680 -1.2861 9 6 2.7614 3.0155 -1.6593 10 7 1.6592 2.1230 -1.2562 11 6 0.4078 2.8741 -1.0896 12 6 -0.0940 3.3391 -2.4582 13 1 -0.2726 2.4717 -3.0936 14 8 0.8891 4.1800 -3.0654 15 6 -1.3774 4.1101 -2.2872 16 1 -1.7960 4.2502 -1.3016 17 6 -2.0201 4.6322 -3.3897 18 7 -1.5101 4.4620 -4.5899 19 14 -3.6151 5.5814 -3.1785 20 1 -3.9747 5.6309 -1.7387 21 1 -3.4407 6.9632 -3.6935 22 1 -4.6981 4.9039 -3.9358 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9956 0.6678 -0.6102 29 1 3.9746 1.4043 1.0269 30 1 5.4075 3.8227 -1.7903 31 1 6.0330 2.7294 -0.5326 32 1 5.3109 2.0596 -2.0152 33 1 3.1299 2.7283 -2.6441 34 1 2.4142 4.0486 -1.6776 35 1 0.5864 3.7415 -0.4542 36 1 -0.3421 2.2327 -0.6264 37 1 1.0984 4.9733 -2.5535 38 1 -1.9620 4.8297 -5.3655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929764743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = -82.220045 kcal Electronic energy + Delta-G solvation = -16857.330377 eV Core-core repulsion = 14312.195842 eV Total energy + Delta-G solvation = -2545.134535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54200 -37.56561 -34.88240 -34.29242 -33.28244 -30.42778 -29.29492 -27.01109 -25.66120 -23.97839 -22.25149 -21.34012 -20.45950 -18.98045 -17.38644 -16.67113 -16.40024 -16.25921 -15.32119 -15.10138 -14.77855 -14.37213 -14.27335 -13.86517 -13.57157 -13.49277 -13.19635 -13.07074 -12.83946 -12.79575 -12.47429 -12.25149 -12.08117 -11.91007 -11.54953 -11.50508 -11.36982 -11.13409 -10.94856 -10.71669 -9.94811 -9.03823 -8.13207 -6.39558 1.38499 1.39556 1.51857 2.37847 3.11823 3.20341 3.70138 3.80037 4.01505 4.22850 4.30771 4.35652 4.44760 4.51837 4.53720 4.61471 4.70096 4.81527 4.88103 4.90572 4.98385 5.06746 5.12767 5.16032 5.23656 5.27102 5.33822 5.42814 5.54345 5.55264 5.62949 5.76348 6.03636 6.35801 6.38853 6.74786 7.32909 7.54120 8.91235 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.007620 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.140571 B = 3673.898155 C = 4290.694581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C 0.062 3.938 4 H 0.045 0.955 5 C -0.109 4.109 6 C -0.115 4.115 7 H 0.073 0.927 8 C -0.132 4.132 9 C 0.059 3.941 10 N -0.534 5.534 11 C 0.042 3.958 12 C 0.240 3.760 13 H 0.016 0.984 14 O -0.569 6.569 15 C -0.587 4.587 16 H 0.057 0.943 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.076 0.924 37 H 0.348 0.652 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -5.114 10.868 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.046 4.046 4 H 0.063 0.937 5 C -0.147 4.147 6 C -0.134 4.134 7 H 0.092 0.908 8 C -0.190 4.190 9 C -0.069 4.069 10 N -0.258 5.258 11 C -0.086 4.086 12 C 0.182 3.818 13 H 0.034 0.966 14 O -0.373 6.373 15 C -0.625 4.625 16 H 0.075 0.925 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.205 1.205 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.094 0.906 37 H 0.193 0.807 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.447 -5.937 9.831 14.870 hybrid contribution -1.084 1.631 0.571 2.040 sum 8.362 -4.306 10.402 14.024 Atomic orbital electron populations 1.21855 0.96744 1.01531 1.01052 1.21413 0.95404 0.94780 1.02082 1.22750 0.95770 0.95648 0.90411 0.93694 1.22775 0.93482 0.96701 1.01768 1.22452 0.95752 0.97851 0.97377 0.90834 1.21660 0.95039 1.01778 1.00484 1.22847 0.90460 0.95631 0.97931 1.63381 1.02737 1.29118 1.30563 1.22898 0.92111 0.95407 0.98208 1.19122 0.85364 0.88882 0.88457 0.96574 1.86593 1.61374 1.36502 1.52841 1.22064 1.09809 1.37144 0.93495 0.92480 1.25908 1.00489 0.96510 0.94770 1.70242 1.39906 1.44577 0.98834 0.85504 0.79216 0.78236 0.78566 1.18764 1.20401 1.20451 0.94164 0.91918 0.93076 0.92312 0.89738 0.90525 0.89074 0.92814 0.90946 0.92872 0.92944 0.93394 0.96390 0.90625 0.80725 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 8.72 71.98 0.63 -3.80 16 2 C -0.10 -2.58 5.66 30.59 0.17 -2.41 16 3 C 0.06 1.80 2.58 45.38 0.12 1.92 16 4 H 0.04 1.32 7.81 -2.39 -0.02 1.30 16 5 C -0.11 -2.56 5.94 31.98 0.19 -2.37 16 6 C -0.11 -2.96 3.54 -9.61 -0.03 -2.99 16 7 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 8 C -0.13 -2.85 9.13 71.98 0.66 -2.19 16 9 C 0.06 2.07 5.11 86.65 0.44 2.52 16 10 N -0.53 -19.89 4.62 -860.66 -3.98 -23.87 16 11 C 0.04 1.80 3.90 86.30 0.34 2.13 16 12 C 0.24 12.72 3.09 29.85 0.09 12.81 16 13 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 14 O -0.57 -30.11 10.34 -148.98 -1.54 -31.65 16 15 C -0.59 -33.03 8.76 25.60 0.22 -32.81 16 16 H 0.06 3.11 7.74 -2.92 -0.02 3.08 16 17 C 0.03 1.46 5.40 84.66 0.46 1.92 16 18 N -0.90 -54.88 12.83 21.45 0.28 -54.61 16 19 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H 0.04 1.43 6.00 -2.39 -0.01 1.42 16 24 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 1.76 7.95 -2.39 -0.02 1.75 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.18 8.13 -2.39 -0.02 1.17 16 33 H 0.05 2.03 7.82 -2.39 -0.02 2.01 16 34 H 0.05 1.82 5.20 -2.39 -0.01 1.80 16 35 H 0.02 0.76 7.96 -2.39 -0.02 0.74 16 36 H 0.08 3.18 5.29 -2.38 -0.01 3.17 16 37 H 0.35 16.55 7.92 -74.05 -0.59 15.97 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.64 293.89 0.50 -64.14 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.43 Total: 25.20 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.28 Total: -25.27 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.70 Total: -78.48 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.54 Total: -31.65 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.64 0.50 -64.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929764743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.081 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds