Wall clock time and date at job start Sun Mar 29 2020 22:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.90463 * 2 1 4 4 C 1.54908 * 110.99131 * 123.87399 * 2 1 3 5 5 N 1.47839 * 104.79542 * 155.15841 * 4 2 1 6 6 C 1.46902 * 110.99648 * 213.63324 * 5 4 2 7 7 C 1.53003 * 109.46922 * 292.81404 * 6 5 4 8 8 H 1.08999 * 109.47231 * 60.00584 * 7 6 5 9 9 O 1.42892 * 109.47451 * 300.00168 * 7 6 5 10 10 C 1.50707 * 109.47031 * 179.97438 * 7 6 5 11 11 H 1.08002 * 119.99687 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99930 * 179.97438 * 10 7 6 13 13 N 1.31523 * 119.99911 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00116 * 0.02562 * 12 10 7 15 15 H 1.48507 * 109.46963 * 89.99922 * 14 12 10 16 16 H 1.48497 * 109.46988 * 209.99565 * 14 12 10 17 17 H 1.48496 * 109.47144 * 329.99613 * 14 12 10 18 18 C 1.47446 * 108.57038 * 335.89979 * 5 4 2 19 19 C 1.52999 * 109.88498 * 120.39500 * 18 5 4 20 20 C 1.53000 * 109.88638 * 241.58542 * 18 5 4 21 21 C 1.54315 * 107.22948 * 0.99316 * 18 5 4 22 22 H 1.09002 * 109.47959 * 183.86226 * 1 2 3 23 23 H 1.09003 * 109.47177 * 303.86817 * 1 2 3 24 24 H 1.09005 * 109.47482 * 63.86369 * 1 2 3 25 25 H 1.09000 * 110.37110 * 36.32487 * 4 2 1 26 26 H 1.09005 * 110.36764 * 273.98977 * 4 2 1 27 27 H 1.09001 * 109.47098 * 172.81988 * 6 5 4 28 28 H 1.08992 * 109.47026 * 52.81483 * 6 5 4 29 29 H 0.96706 * 114.00118 * 300.00104 * 9 7 6 30 30 H 0.96993 * 119.99935 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47050 * 60.01006 * 19 18 5 32 32 H 1.09003 * 109.46749 * 179.97438 * 19 18 5 33 33 H 1.08992 * 109.47380 * 300.00029 * 19 18 5 34 34 H 1.09000 * 109.47109 * 54.55419 * 20 18 5 35 35 H 1.08999 * 109.46324 * 174.55304 * 20 18 5 36 36 H 1.08996 * 109.47297 * 294.55403 * 20 18 5 37 37 H 1.09004 * 110.70568 * 140.66805 * 21 18 5 38 38 H 1.09005 * 110.70465 * 263.89779 * 21 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0849 -0.8061 1.2008 5 7 3.4312 -1.2422 0.7730 6 6 3.7610 -2.5591 1.3341 7 6 3.9081 -2.4440 2.8527 8 1 2.9710 -2.0902 3.2827 9 8 4.9529 -1.5195 3.1614 10 6 4.2458 -3.7952 3.4285 11 1 4.3459 -4.6503 2.7764 12 6 4.4279 -3.9394 4.7875 13 7 4.7232 -5.1185 5.2899 14 14 4.2554 -2.4602 5.9152 15 1 2.8457 -2.3444 6.3675 16 1 5.1412 -2.6311 7.0947 17 1 4.6421 -1.2294 5.1799 18 6 3.4691 -1.2712 -0.7007 19 6 4.5539 -0.3213 -1.2122 20 6 3.7483 -2.6951 -1.1862 21 6 2.0856 -0.8071 -1.2028 22 1 -0.3635 -1.0253 0.0692 23 1 -0.3634 0.5727 0.8533 24 1 -0.3634 0.4527 -0.9226 25 1 1.4522 -1.6705 1.4024 26 1 2.1544 -0.1713 2.0842 27 1 4.6980 -2.9129 0.9042 28 1 2.9640 -3.2643 1.0987 29 1 5.8177 -1.7712 2.8093 30 1 4.8510 -5.2200 6.2460 31 1 5.5228 -0.6323 -0.8215 32 1 4.5763 -0.3485 -2.3017 33 1 4.3358 0.6929 -0.8781 34 1 3.0152 -3.3764 -0.7545 35 1 3.6792 -2.7282 -2.2735 36 1 4.7494 -2.9948 -0.8764 37 1 2.1883 -0.1691 -2.0806 38 1 1.4473 -1.6636 -1.4201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929770205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:20 Heat of formation + Delta-G solvation = -51.416077 kcal Electronic energy + Delta-G solvation = -17012.137427 eV Core-core repulsion = 14468.338652 eV Total energy + Delta-G solvation = -2543.798775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71020 -35.96887 -33.52438 -32.17861 -31.93947 -28.52826 -27.27350 -26.60823 -24.94967 -23.57759 -20.66989 -19.89171 -18.49956 -17.04478 -15.86293 -15.05881 -14.60024 -14.56996 -14.39559 -13.71533 -13.42639 -13.04031 -12.93187 -12.65139 -12.37376 -12.05171 -11.89101 -11.78299 -11.51631 -11.32220 -11.04269 -10.84737 -10.65489 -10.45922 -10.36395 -10.28832 -10.10620 -9.75272 -8.94320 -8.57371 -8.16281 -7.66653 -6.09107 -4.19763 3.42493 3.51899 3.80796 4.32532 4.58481 4.73011 4.80484 5.00285 5.26680 5.28584 5.40017 5.47649 5.60245 5.69526 5.76005 5.83057 5.86304 5.93343 5.96248 6.00855 6.05812 6.12043 6.16971 6.21446 6.27814 6.34106 6.43018 6.48582 6.66003 6.74123 7.35513 7.50548 7.63589 7.80061 8.34222 8.88156 9.18423 9.56805 11.01662 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033089 B = 0.008120 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.008721 B = 3447.596776 C = 3752.569380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.079 0.921 4 C 0.050 3.950 5 N -0.512 5.512 6 C 0.036 3.964 7 C 0.201 3.799 8 H 0.049 0.951 9 O -0.570 6.570 10 C -0.564 4.564 11 H 0.070 0.930 12 C 0.083 3.917 13 N -0.896 5.896 14 Si 0.870 3.130 15 H -0.289 1.289 16 H -0.297 1.297 17 H -0.215 1.215 18 C 0.090 3.910 19 C -0.122 4.122 20 C -0.162 4.162 21 C -0.127 4.127 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.353 0.647 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 9.364 -12.778 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.078 4.078 5 N -0.235 5.235 6 C -0.092 4.092 7 C 0.143 3.857 8 H 0.067 0.933 9 O -0.375 6.375 10 C -0.602 4.602 11 H 0.088 0.912 12 C -0.121 4.121 13 N -0.533 5.533 14 Si 0.697 3.303 15 H -0.216 1.216 16 H -0.223 1.223 17 H -0.137 1.137 18 C 0.001 3.999 19 C -0.180 4.180 20 C -0.220 4.220 21 C -0.165 4.165 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.199 0.801 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.009 9.923 -12.145 16.464 hybrid contribution -0.312 -0.573 0.158 0.671 sum -5.321 9.350 -11.987 16.106 Atomic orbital electron populations 1.21711 0.94886 1.01811 1.01407 1.22292 0.95134 0.99612 0.95225 0.90226 1.23077 0.89081 0.98147 0.97469 1.63624 1.26244 1.28481 1.05187 1.23055 0.99983 0.87629 0.98544 1.19709 0.88234 0.88948 0.88797 0.93323 1.86653 1.19741 1.52183 1.78928 1.21544 1.50803 0.94381 0.93477 0.91197 1.24984 0.92716 0.96001 0.98405 1.69966 1.46845 1.23408 1.13067 0.87034 0.77405 0.86602 0.79261 1.21578 1.22342 1.13684 1.21748 0.94622 0.94671 0.88895 1.21703 0.98504 0.99190 0.98651 1.22365 1.02610 0.96629 1.00389 1.22933 0.96156 0.99533 0.97908 0.92713 0.92539 0.92839 0.93767 0.90522 0.90968 0.94901 0.80150 0.92667 0.92424 0.93414 0.92613 0.92251 0.92972 0.91679 0.91365 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.30 37.16 0.35 -1.19 16 2 C -0.10 -1.33 3.63 -88.48 -0.32 -1.66 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.05 0.82 5.15 -2.30 -0.01 0.81 16 5 N -0.51 -8.91 4.67 -215.75 -1.01 -9.92 16 6 C 0.04 0.71 3.27 -3.82 -0.01 0.70 16 7 C 0.20 4.78 2.27 -27.88 -0.06 4.72 16 8 H 0.05 1.21 6.85 -51.93 -0.36 0.86 16 9 O -0.57 -13.40 10.01 -35.23 -0.35 -13.75 16 10 C -0.56 -15.86 9.34 -34.44 -0.32 -16.18 16 11 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 12 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 13 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 14 Si 0.87 22.28 26.99 -169.99 -4.59 17.69 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 17 H -0.21 -5.41 5.30 56.52 0.30 -5.11 16 18 C 0.09 1.29 1.15 -130.61 -0.15 1.14 16 19 C -0.12 -1.60 8.71 37.16 0.32 -1.28 16 20 C -0.16 -2.26 7.14 37.16 0.27 -1.99 16 21 C -0.13 -1.58 5.48 -24.91 -0.14 -1.72 16 22 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.75 7.50 -51.93 -0.39 0.36 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.07 1.44 6.32 -51.93 -0.33 1.11 16 28 H 0.03 0.67 6.65 -51.93 -0.35 0.33 16 29 H 0.35 7.50 9.04 45.56 0.41 7.91 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.89 6.61 -51.93 -0.34 0.54 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 37 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 38 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -30.77 290.84 -6.94 -37.70 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.96 Total: 5.10 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.18 Total: -14.31 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.23 Total: -36.81 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.35 Total: -13.75 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.59 Total: 17.69 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.77 -6.94 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929770205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.712 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds