Wall clock time and date at job start Sun Mar 29 2020 22:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.90463 * 2 1 4 4 C 1.54908 * 110.99131 * 123.87399 * 2 1 3 5 5 N 1.47839 * 104.79542 * 155.15841 * 4 2 1 6 6 C 1.46902 * 110.99648 * 213.63324 * 5 4 2 7 7 C 1.53003 * 109.46922 * 292.81404 * 6 5 4 8 8 H 1.08999 * 109.47231 * 60.00584 * 7 6 5 9 9 O 1.42892 * 109.47451 * 300.00168 * 7 6 5 10 10 C 1.50707 * 109.47031 * 179.97438 * 7 6 5 11 11 H 1.08002 * 119.99687 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99930 * 179.97438 * 10 7 6 13 13 N 1.31523 * 119.99911 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00116 * 0.02562 * 12 10 7 15 15 H 1.48507 * 109.46963 * 89.99922 * 14 12 10 16 16 H 1.48497 * 109.46988 * 209.99565 * 14 12 10 17 17 H 1.48496 * 109.47144 * 329.99613 * 14 12 10 18 18 C 1.47446 * 108.57038 * 335.89979 * 5 4 2 19 19 C 1.52999 * 109.88498 * 120.39500 * 18 5 4 20 20 C 1.53000 * 109.88638 * 241.58542 * 18 5 4 21 21 C 1.54315 * 107.22948 * 0.99316 * 18 5 4 22 22 H 1.09002 * 109.47959 * 183.86226 * 1 2 3 23 23 H 1.09003 * 109.47177 * 303.86817 * 1 2 3 24 24 H 1.09005 * 109.47482 * 63.86369 * 1 2 3 25 25 H 1.09000 * 110.37110 * 36.32487 * 4 2 1 26 26 H 1.09005 * 110.36764 * 273.98977 * 4 2 1 27 27 H 1.09001 * 109.47098 * 172.81988 * 6 5 4 28 28 H 1.08992 * 109.47026 * 52.81483 * 6 5 4 29 29 H 0.96706 * 114.00118 * 300.00104 * 9 7 6 30 30 H 0.96993 * 119.99935 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47050 * 60.01006 * 19 18 5 32 32 H 1.09003 * 109.46749 * 179.97438 * 19 18 5 33 33 H 1.08992 * 109.47380 * 300.00029 * 19 18 5 34 34 H 1.09000 * 109.47109 * 54.55419 * 20 18 5 35 35 H 1.08999 * 109.46324 * 174.55304 * 20 18 5 36 36 H 1.08996 * 109.47297 * 294.55403 * 20 18 5 37 37 H 1.09004 * 110.70568 * 140.66805 * 21 18 5 38 38 H 1.09005 * 110.70465 * 263.89779 * 21 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0849 -0.8061 1.2008 5 7 3.4312 -1.2422 0.7730 6 6 3.7610 -2.5591 1.3341 7 6 3.9081 -2.4440 2.8527 8 1 2.9710 -2.0902 3.2827 9 8 4.9529 -1.5195 3.1614 10 6 4.2458 -3.7952 3.4285 11 1 4.3459 -4.6503 2.7764 12 6 4.4279 -3.9394 4.7875 13 7 4.7232 -5.1185 5.2899 14 14 4.2554 -2.4602 5.9152 15 1 2.8457 -2.3444 6.3675 16 1 5.1412 -2.6311 7.0947 17 1 4.6421 -1.2294 5.1799 18 6 3.4691 -1.2712 -0.7007 19 6 4.5539 -0.3213 -1.2122 20 6 3.7483 -2.6951 -1.1862 21 6 2.0856 -0.8071 -1.2028 22 1 -0.3635 -1.0253 0.0692 23 1 -0.3634 0.5727 0.8533 24 1 -0.3634 0.4527 -0.9226 25 1 1.4522 -1.6705 1.4024 26 1 2.1544 -0.1713 2.0842 27 1 4.6980 -2.9129 0.9042 28 1 2.9640 -3.2643 1.0987 29 1 5.8177 -1.7712 2.8093 30 1 4.8510 -5.2200 6.2460 31 1 5.5228 -0.6323 -0.8215 32 1 4.5763 -0.3485 -2.3017 33 1 4.3358 0.6929 -0.8781 34 1 3.0152 -3.3764 -0.7545 35 1 3.6792 -2.7282 -2.2735 36 1 4.7494 -2.9948 -0.8764 37 1 2.1883 -0.1691 -2.0806 38 1 1.4473 -1.6636 -1.4201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929770205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:20 Heat of formation + Delta-G solvation = -73.850376 kcal Electronic energy + Delta-G solvation = -17013.110251 eV Core-core repulsion = 14468.338652 eV Total energy + Delta-G solvation = -2544.771599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95298 -37.81586 -34.63503 -34.41324 -33.32063 -30.18429 -28.62245 -27.64300 -26.38234 -25.15445 -22.28883 -21.15175 -19.92524 -18.98111 -17.12313 -16.86078 -16.26335 -16.20587 -15.90823 -15.13057 -14.92781 -14.56039 -14.15305 -14.02851 -13.68984 -13.40361 -13.27600 -12.96860 -12.89433 -12.83028 -12.59792 -12.35331 -12.17829 -11.90688 -11.64709 -11.53825 -11.43704 -11.20507 -11.00101 -10.81643 -10.09313 -9.07013 -8.36998 -6.51207 1.37459 1.42895 1.74592 2.43111 3.00580 3.05164 3.66760 3.68492 3.93751 4.11933 4.22673 4.30268 4.34734 4.45823 4.54533 4.62541 4.67900 4.73845 4.85142 4.86680 4.91633 4.98500 5.04946 5.07394 5.10015 5.19780 5.25039 5.32956 5.44845 5.46235 5.52009 5.58556 6.07433 6.22941 6.33777 6.61526 7.22040 7.37626 8.77303 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033089 B = 0.008120 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.008721 B = 3447.596776 C = 3752.569380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.043 3.957 5 N -0.521 5.521 6 C 0.054 3.946 7 C 0.209 3.791 8 H 0.041 0.959 9 O -0.572 6.572 10 C -0.566 4.566 11 H 0.036 0.964 12 C 0.029 3.971 13 N -0.940 5.940 14 Si 0.938 3.062 15 H -0.286 1.286 16 H -0.295 1.295 17 H -0.206 1.206 18 C 0.083 3.917 19 C -0.118 4.118 20 C -0.159 4.159 21 C -0.120 4.120 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.364 0.636 30 H 0.267 0.733 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 11.529 -14.287 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.104 0.896 4 C -0.085 4.085 5 N -0.245 5.245 6 C -0.074 4.074 7 C 0.151 3.849 8 H 0.059 0.941 9 O -0.378 6.378 10 C -0.604 4.604 11 H 0.054 0.946 12 C -0.170 4.170 13 N -0.579 5.579 14 Si 0.762 3.238 15 H -0.213 1.213 16 H -0.222 1.222 17 H -0.128 1.128 18 C -0.006 4.006 19 C -0.176 4.176 20 C -0.217 4.217 21 C -0.158 4.158 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.211 0.789 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.626 12.095 -13.678 19.106 hybrid contribution -0.096 -1.295 0.569 1.418 sum -5.722 10.800 -13.109 17.923 Atomic orbital electron populations 1.21688 0.93272 1.01782 1.02697 1.22261 0.96402 0.99235 0.93468 0.89604 1.23120 0.88641 0.97958 0.98740 1.63559 1.27132 1.26292 1.07555 1.22662 0.99635 0.89132 0.96000 1.19488 0.87776 0.86464 0.91166 0.94145 1.86583 1.20333 1.51616 1.79292 1.21865 1.49860 0.95492 0.93205 0.94612 1.25832 0.92589 0.98513 1.00095 1.70083 1.48695 1.25516 1.13597 0.86000 0.77301 0.83341 0.77173 1.21283 1.22220 1.12830 1.21947 0.96567 0.95327 0.86794 1.21673 0.97117 0.98540 1.00228 1.22321 1.01286 0.96068 1.02013 1.22917 0.94556 0.99899 0.98451 0.93293 0.92257 0.90697 0.95077 0.92021 0.91211 0.95951 0.78912 0.92439 0.93767 0.90789 0.92623 0.93837 0.90332 0.92939 0.88826 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.30 71.98 0.67 -1.94 16 2 C -0.09 -2.19 3.63 -9.41 -0.03 -2.23 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.04 1.37 5.15 86.77 0.45 1.82 16 5 N -0.52 -17.65 4.67 -836.51 -3.91 -21.56 16 6 C 0.05 2.17 3.27 86.30 0.28 2.45 16 7 C 0.21 9.99 2.27 29.85 0.07 10.06 16 8 H 0.04 2.02 6.85 -2.39 -0.02 2.00 16 9 O -0.57 -26.32 10.01 -148.98 -1.49 -27.81 16 10 C -0.57 -32.55 9.34 25.60 0.24 -32.31 16 11 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 12 C 0.03 1.73 5.47 84.65 0.46 2.20 16 13 N -0.94 -59.29 13.96 21.45 0.30 -58.99 16 14 Si 0.94 46.46 26.99 68.60 1.85 48.31 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 17 H -0.21 -9.87 5.30 99.48 0.53 -9.34 16 18 C 0.08 2.19 1.15 3.87 0.00 2.20 16 19 C -0.12 -2.75 8.71 71.98 0.63 -2.12 16 20 C -0.16 -4.20 7.14 71.98 0.51 -3.68 16 21 C -0.12 -2.60 5.48 31.77 0.17 -2.42 16 22 H 0.05 0.99 8.07 -2.39 -0.02 0.97 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.03 1.06 7.50 -2.39 -0.02 1.04 16 26 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.07 2.81 6.32 -2.39 -0.02 2.79 16 28 H 0.02 0.94 6.65 -2.39 -0.02 0.92 16 29 H 0.36 15.13 9.04 -74.05 -0.67 14.46 16 30 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.27 6.61 -2.39 -0.02 1.25 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.50 6.71 -2.39 -0.02 1.48 16 37 H 0.09 1.60 7.83 -2.38 -0.02 1.59 16 38 H 0.07 1.44 7.75 -2.38 -0.02 1.43 16 Total: -1.00 -66.11 290.84 0.38 -65.74 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.17 Total: 20.30 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 3.45 Total: -25.98 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -3.61 Total: -80.55 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.49 Total: -27.81 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.85 Total: 48.31 kcal Total: -66.11 0.38 -65.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929770205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.113 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds