Wall clock time and date at job start Sun Mar 29 2020 21:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 C 1.53011 * 109.46976 * 119.99823 * 2 1 3 5 5 H 1.09002 * 110.78203 * 301.79629 * 4 2 1 6 6 C 1.54592 * 110.72378 * 178.54580 * 4 2 1 7 7 C 1.53991 * 105.22846 * 219.73341 * 6 4 2 8 8 N 1.47900 * 107.05253 * 358.72540 * 7 6 4 9 9 C 1.46910 * 110.99533 * 145.84552 * 8 7 6 10 10 C 1.53008 * 109.46877 * 184.22977 * 9 8 7 11 11 H 1.08997 * 109.47208 * 58.71764 * 10 9 8 12 12 O 1.42903 * 109.46747 * 298.72004 * 10 9 8 13 13 C 1.50698 * 109.46774 * 178.72037 * 10 9 8 14 14 H 1.08001 * 120.00068 * 359.97438 * 13 10 9 15 15 C 1.37882 * 119.99868 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99871 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99868 * 180.02562 * 15 13 10 18 18 H 1.48490 * 109.47345 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47110 * 120.00317 * 17 15 13 20 20 H 1.48503 * 109.46794 * 240.00010 * 17 15 13 21 21 C 1.48533 * 105.82468 * 25.33450 * 8 7 6 22 22 H 1.08997 * 109.47263 * 300.00519 * 1 2 3 23 23 H 1.09004 * 109.46977 * 60.00403 * 1 2 3 24 24 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47263 * 239.99481 * 2 1 3 26 26 H 1.09004 * 109.46794 * 299.99708 * 3 2 1 27 27 H 1.08997 * 109.47405 * 59.99567 * 3 2 1 28 28 H 1.08998 * 109.47373 * 179.97438 * 3 2 1 29 29 H 1.09002 * 110.30967 * 100.76635 * 6 4 2 30 30 H 1.08998 * 110.31413 * 338.70276 * 6 4 2 31 31 H 1.08993 * 109.92012 * 118.08063 * 7 6 4 32 32 H 1.09001 * 109.91808 * 239.17727 * 7 6 4 33 33 H 1.08997 * 109.46777 * 304.22708 * 9 8 7 34 34 H 1.08997 * 109.47272 * 64.23235 * 9 8 7 35 35 H 0.96694 * 114.00113 * 299.99398 * 12 10 9 36 36 H 0.96995 * 119.99870 * 180.02562 * 16 15 13 37 37 H 1.08996 * 110.67035 * 79.22472 * 21 8 7 38 38 H 1.09000 * 110.66679 * 202.18852 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 1.6626 -0.2429 2.1532 6 6 3.5851 -0.7700 1.2604 7 6 3.9417 -2.1713 1.7900 8 7 2.6672 -2.8588 2.0904 9 6 2.7684 -4.2986 1.8166 10 6 1.4050 -4.9569 2.0375 11 1 0.6676 -4.4942 1.3816 12 8 1.0072 -4.7830 3.3990 13 6 1.5013 -6.4283 1.7263 14 1 2.4408 -6.8514 1.4028 15 6 0.3899 -7.2342 1.8545 16 7 -0.7543 -6.7187 2.2479 17 14 0.5095 -9.0581 1.4694 18 1 1.8960 -9.3859 1.0510 19 1 0.1595 -9.8437 2.6801 20 1 -0.4321 -9.3949 0.3715 21 6 1.6478 -2.2215 1.2181 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4425 0.0005 29 1 3.9831 -0.0022 1.9239 30 1 3.9751 -0.6363 0.2515 31 1 4.4929 -2.7261 1.0308 32 1 4.5425 -2.0844 2.6954 33 1 3.0823 -4.4508 0.7839 34 1 3.5009 -4.7457 2.4887 35 1 1.6185 -5.1709 4.0400 36 1 -1.5360 -7.2858 2.3384 37 1 1.7110 -2.6133 0.2030 38 1 0.6472 -2.3692 1.6245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929820893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:47 Heat of formation + Delta-G solvation = -67.805645 kcal Electronic energy + Delta-G solvation = -16511.519579 eV Core-core repulsion = 13967.010099 eV Total energy + Delta-G solvation = -2544.509480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.04964 -36.05885 -34.55167 -32.05420 -30.78444 -28.41709 -27.54444 -26.76098 -24.35200 -22.11291 -20.88878 -19.73948 -19.46496 -16.95844 -15.60480 -15.17825 -14.68282 -14.55528 -14.05665 -13.73411 -13.42658 -13.04997 -12.93753 -12.74515 -12.32103 -12.09567 -11.79756 -11.46952 -11.26908 -11.01318 -10.93160 -10.77121 -10.70878 -10.51583 -10.29858 -10.18914 -10.16122 -10.02275 -8.91651 -8.54384 -8.01539 -7.70224 -5.98141 -4.16284 3.27826 3.35971 3.39386 4.37517 4.56553 4.81387 4.91818 5.02726 5.20184 5.29632 5.33958 5.47566 5.65787 5.69529 5.74533 5.86482 5.91366 5.99867 6.04397 6.08407 6.14593 6.19741 6.20765 6.32210 6.37019 6.38455 6.57556 6.60635 6.66824 6.86320 7.50452 7.68220 7.79847 7.89457 8.23806 8.87965 9.49208 9.65646 11.06124 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039263 B = 0.006210 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.962020 B = 4507.561555 C = 4841.831961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.087 4.087 5 H 0.080 0.920 6 C -0.123 4.123 7 C 0.031 3.969 8 N -0.507 5.507 9 C 0.022 3.978 10 C 0.235 3.765 11 H 0.054 0.946 12 O -0.555 6.555 13 C -0.574 4.574 14 H 0.054 0.946 15 C 0.080 3.920 16 N -0.859 5.859 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.048 3.952 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.343 0.657 36 H 0.259 0.741 37 H 0.038 0.962 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 12.527 -3.651 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.106 4.106 5 H 0.098 0.902 6 C -0.161 4.161 7 C -0.097 4.097 8 N -0.231 5.231 9 C -0.106 4.106 10 C 0.177 3.823 11 H 0.072 0.928 12 O -0.357 6.357 13 C -0.612 4.612 14 H 0.073 0.927 15 C -0.126 4.126 16 N -0.495 5.495 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.080 4.080 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.186 0.814 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.173 12.847 -3.349 14.249 hybrid contribution 0.820 -1.578 -0.923 2.003 sum 5.993 11.269 -4.271 13.459 Atomic orbital electron populations 1.21853 0.95062 1.02406 1.01277 1.21124 0.95981 0.95775 0.97746 1.21844 1.00868 0.96157 1.01381 1.22187 0.94629 0.95951 0.97836 0.90198 1.22442 0.96178 0.97001 1.00503 1.22876 0.93623 0.94010 0.99184 1.64783 1.03462 1.03876 1.50981 1.23240 1.02670 0.86572 0.98120 1.19344 0.88168 0.92883 0.81895 0.92792 1.86546 1.52088 1.80472 1.16591 1.21711 0.96393 0.94346 1.48770 0.92726 1.25025 0.95227 0.98446 0.93938 1.70094 1.00210 1.35228 1.43940 0.86629 0.78140 0.85617 0.78067 1.19759 1.20837 1.20908 1.23226 0.97723 0.91890 0.95160 0.92680 0.93143 0.92021 0.91498 0.93096 0.92776 0.92780 0.91688 0.91990 0.94644 0.91215 0.95563 0.91878 0.81367 0.93070 0.94389 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.03 37.16 0.34 -1.45 16 2 C -0.09 -1.05 2.31 -90.62 -0.21 -1.26 16 3 C -0.15 -1.45 8.98 37.16 0.33 -1.12 16 4 C -0.09 -1.22 2.61 -88.67 -0.23 -1.45 16 5 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 6 C -0.12 -1.61 5.51 -25.38 -0.14 -1.75 16 7 C 0.03 0.49 6.70 -2.76 -0.02 0.47 16 8 N -0.51 -9.71 5.24 -230.34 -1.21 -10.92 16 9 C 0.02 0.47 4.43 -3.81 -0.02 0.46 16 10 C 0.24 6.09 2.61 -27.88 -0.07 6.02 16 11 H 0.05 1.53 6.83 -51.93 -0.35 1.17 16 12 O -0.56 -14.84 12.62 -35.23 -0.44 -15.29 16 13 C -0.57 -16.03 8.76 -34.44 -0.30 -16.33 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 16 N -0.86 -25.72 12.84 55.43 0.71 -25.01 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 C 0.05 0.86 3.92 -1.81 -0.01 0.85 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.83 7.38 -51.93 -0.38 0.44 16 25 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.51 7.16 -51.93 -0.37 0.14 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 31 H 0.04 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.56 7.97 -51.93 -0.41 0.15 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.34 8.29 9.04 45.56 0.41 8.70 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.09 1.73 7.52 -51.93 -0.39 1.34 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -30.28 300.21 -7.91 -38.20 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.05 Total: 5.55 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.42 Total: -13.39 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.50 Total: -35.93 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.44 Total: -15.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.28 -7.91 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929820893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.610 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds