Wall clock time and date at job start Sun Mar 29 2020 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 C 1.53011 * 109.46976 * 119.99823 * 2 1 3 5 5 H 1.09002 * 110.78203 * 301.79629 * 4 2 1 6 6 C 1.54592 * 110.72378 * 178.54580 * 4 2 1 7 7 C 1.53991 * 105.22846 * 219.73341 * 6 4 2 8 8 N 1.47900 * 107.05253 * 358.72540 * 7 6 4 9 9 C 1.46910 * 110.99533 * 145.84552 * 8 7 6 10 10 C 1.53008 * 109.46877 * 184.22977 * 9 8 7 11 11 H 1.08997 * 109.47208 * 58.71764 * 10 9 8 12 12 O 1.42903 * 109.46747 * 298.72004 * 10 9 8 13 13 C 1.50698 * 109.46774 * 178.72037 * 10 9 8 14 14 H 1.08001 * 120.00068 * 359.97438 * 13 10 9 15 15 C 1.37882 * 119.99868 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99871 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 119.99868 * 180.02562 * 15 13 10 18 18 H 1.48490 * 109.47345 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47110 * 120.00317 * 17 15 13 20 20 H 1.48503 * 109.46794 * 240.00010 * 17 15 13 21 21 C 1.48533 * 105.82468 * 25.33450 * 8 7 6 22 22 H 1.08997 * 109.47263 * 300.00519 * 1 2 3 23 23 H 1.09004 * 109.46977 * 60.00403 * 1 2 3 24 24 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47263 * 239.99481 * 2 1 3 26 26 H 1.09004 * 109.46794 * 299.99708 * 3 2 1 27 27 H 1.08997 * 109.47405 * 59.99567 * 3 2 1 28 28 H 1.08998 * 109.47373 * 179.97438 * 3 2 1 29 29 H 1.09002 * 110.30967 * 100.76635 * 6 4 2 30 30 H 1.08998 * 110.31413 * 338.70276 * 6 4 2 31 31 H 1.08993 * 109.92012 * 118.08063 * 7 6 4 32 32 H 1.09001 * 109.91808 * 239.17727 * 7 6 4 33 33 H 1.08997 * 109.46777 * 304.22708 * 9 8 7 34 34 H 1.08997 * 109.47272 * 64.23235 * 9 8 7 35 35 H 0.96694 * 114.00113 * 299.99398 * 12 10 9 36 36 H 0.96995 * 119.99870 * 180.02562 * 16 15 13 37 37 H 1.08996 * 110.67035 * 79.22472 * 21 8 7 38 38 H 1.09000 * 110.66679 * 202.18852 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 1.6626 -0.2429 2.1532 6 6 3.5851 -0.7700 1.2604 7 6 3.9417 -2.1713 1.7900 8 7 2.6672 -2.8588 2.0904 9 6 2.7684 -4.2986 1.8166 10 6 1.4050 -4.9569 2.0375 11 1 0.6676 -4.4942 1.3816 12 8 1.0072 -4.7830 3.3990 13 6 1.5013 -6.4283 1.7263 14 1 2.4408 -6.8514 1.4028 15 6 0.3899 -7.2342 1.8545 16 7 -0.7543 -6.7187 2.2479 17 14 0.5095 -9.0581 1.4694 18 1 1.8960 -9.3859 1.0510 19 1 0.1595 -9.8437 2.6801 20 1 -0.4321 -9.3949 0.3715 21 6 1.6478 -2.2215 1.2181 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4425 0.0005 29 1 3.9831 -0.0022 1.9239 30 1 3.9751 -0.6363 0.2515 31 1 4.4929 -2.7261 1.0308 32 1 4.5425 -2.0844 2.6954 33 1 3.0823 -4.4508 0.7839 34 1 3.5009 -4.7457 2.4887 35 1 1.6185 -5.1709 4.0400 36 1 -1.5360 -7.2858 2.3384 37 1 1.7110 -2.6133 0.2030 38 1 0.6472 -2.3692 1.6245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929820893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:46 Heat of formation + Delta-G solvation = -89.657443 kcal Electronic energy + Delta-G solvation = -16512.467144 eV Core-core repulsion = 13967.010099 eV Total energy + Delta-G solvation = -2545.457045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38626 -37.80307 -35.99252 -34.24494 -32.25031 -29.67495 -29.32601 -27.79101 -26.19731 -23.58807 -22.20452 -21.43213 -20.56576 -19.04096 -16.95987 -16.67810 -16.64412 -16.21839 -15.68626 -15.22135 -14.89370 -14.41741 -14.19043 -14.04400 -13.78797 -13.45336 -13.03476 -12.96767 -12.86265 -12.76670 -12.51523 -12.29560 -12.09520 -11.99926 -11.81369 -11.43885 -11.33319 -11.23079 -10.99041 -10.71631 -10.08841 -9.23780 -8.15235 -6.41892 1.38552 1.39428 1.52079 2.37188 3.10061 3.16044 3.67077 3.77369 3.89933 4.18610 4.26090 4.30393 4.37837 4.45797 4.52694 4.55991 4.65267 4.77414 4.85123 4.87554 4.93999 5.00224 5.04231 5.04766 5.12831 5.19692 5.29447 5.34131 5.48161 5.55878 5.58847 5.73181 5.97856 6.13536 6.21603 6.71882 7.32513 7.58859 8.89742 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039263 B = 0.006210 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.962020 B = 4507.561555 C = 4841.831961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.078 4.078 5 H 0.076 0.924 6 C -0.114 4.114 7 C 0.028 3.972 8 N -0.523 5.523 9 C 0.040 3.960 10 C 0.236 3.764 11 H 0.019 0.981 12 O -0.571 6.571 13 C -0.590 4.590 14 H 0.058 0.942 15 C 0.026 3.974 16 N -0.900 5.900 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.049 3.951 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.353 0.647 36 H 0.262 0.738 37 H 0.027 0.973 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 13.281 -4.194 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.197 4.197 4 C -0.097 4.097 5 H 0.094 0.906 6 C -0.151 4.151 7 C -0.100 4.100 8 N -0.247 5.247 9 C -0.089 4.089 10 C 0.178 3.822 11 H 0.037 0.963 12 O -0.375 6.375 13 C -0.628 4.628 14 H 0.077 0.923 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.787 3.213 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.079 4.079 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.794 13.611 -3.893 15.703 hybrid contribution 0.298 -1.786 -0.730 1.952 sum 7.092 11.825 -4.623 14.543 Atomic orbital electron populations 1.21857 0.95489 1.01034 1.02261 1.21105 0.95657 0.97165 0.96378 1.21795 1.01467 0.94202 1.02206 1.22136 0.95742 0.92929 0.98873 0.90552 1.22432 0.94894 0.95866 1.01954 1.22995 0.91821 0.95131 1.00052 1.64705 1.05713 1.02645 1.51654 1.22855 0.99763 0.88273 0.98001 1.19188 0.89554 0.92455 0.80956 0.96281 1.86492 1.53041 1.80689 1.17231 1.22086 0.96637 0.95510 1.48602 0.92346 1.25924 0.94699 1.03490 0.93567 1.70235 1.01073 1.37186 1.45237 0.85469 0.78531 0.79372 0.77947 1.18706 1.20292 1.20380 1.23134 0.95936 0.94931 0.93881 0.92439 0.91427 0.94579 0.91734 0.91859 0.92433 0.91758 0.89373 0.90286 0.94364 0.90079 0.95796 0.91359 0.80278 0.92932 0.95474 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.03 71.98 0.65 -2.87 16 2 C -0.08 -1.89 2.31 -10.79 -0.02 -1.92 16 3 C -0.14 -2.36 8.98 71.98 0.65 -1.71 16 4 C -0.08 -2.10 2.61 -9.53 -0.02 -2.12 16 5 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 6 C -0.11 -2.65 5.51 31.47 0.17 -2.47 16 7 C 0.03 0.81 6.70 86.45 0.58 1.39 16 8 N -0.52 -20.07 5.24 -882.66 -4.63 -24.70 16 9 C 0.04 1.73 4.43 86.30 0.38 2.11 16 10 C 0.24 12.66 2.61 29.85 0.08 12.74 16 11 H 0.02 1.16 6.83 -2.39 -0.02 1.14 16 12 O -0.57 -31.51 12.62 -148.98 -1.88 -33.39 16 13 C -0.59 -33.42 8.76 25.60 0.22 -33.20 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.03 1.46 5.40 84.66 0.46 1.92 16 16 N -0.90 -55.14 12.84 21.45 0.28 -54.86 16 17 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.05 1.82 3.92 86.71 0.34 2.15 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.03 1.01 7.38 -2.39 -0.02 1.00 16 25 H 0.06 1.49 8.13 -2.39 -0.02 1.48 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.97 7.16 -2.39 -0.02 0.95 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.61 7.60 -2.39 -0.02 1.59 16 31 H 0.04 1.11 7.67 -2.39 -0.02 1.09 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.02 1.04 7.97 -2.39 -0.02 1.02 16 34 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.35 17.43 9.04 -74.06 -0.67 16.76 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.03 1.04 7.91 -2.39 -0.02 1.02 16 38 H 0.05 2.17 7.52 -2.39 -0.02 2.15 16 Total: -1.00 -65.75 300.21 -0.39 -66.13 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.34 Total: 24.74 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.48 Total: -23.98 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -4.35 Total: -79.56 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.88 Total: -33.39 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.75 -0.39 -66.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929820893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.523 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds