Wall clock time and date at job start Sun Mar 29 2020 21:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47538 * 2 1 4 4 C 1.52999 * 109.47236 * 120.00481 * 2 1 3 5 5 H 1.09003 * 110.28218 * 299.32646 * 4 2 1 6 6 C 1.54259 * 110.32505 * 61.44865 * 4 2 1 7 7 C 1.54379 * 105.06181 * 118.89888 * 6 4 2 8 8 N 1.48559 * 104.59425 * 23.85490 * 7 6 4 9 9 C 1.46894 * 111.00449 * 200.96353 * 8 7 6 10 10 C 1.53009 * 109.46730 * 294.27380 * 9 8 7 11 11 H 1.08997 * 109.47089 * 57.96372 * 10 9 8 12 12 O 1.42904 * 109.46860 * 297.96273 * 10 9 8 13 13 C 1.50700 * 109.47123 * 177.96598 * 10 9 8 14 14 H 1.08005 * 119.99971 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00158 * 179.97438 * 13 10 9 16 16 N 1.31520 * 119.99806 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00076 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46817 * 60.00342 * 17 15 13 19 19 H 1.48504 * 109.46695 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47009 * 299.99896 * 17 15 13 21 21 C 1.48568 * 104.22049 * 320.51547 * 8 7 6 22 22 H 1.08995 * 109.46960 * 299.99905 * 1 2 3 23 23 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47024 * 59.99549 * 1 2 3 25 25 H 1.09005 * 109.46891 * 240.00073 * 2 1 3 26 26 H 1.09006 * 109.46447 * 60.00144 * 3 2 1 27 27 H 1.08992 * 109.47303 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46925 * 300.00455 * 3 2 1 29 29 H 1.09007 * 110.32695 * 237.79984 * 6 4 2 30 30 H 1.09007 * 110.32730 * 359.90054 * 6 4 2 31 31 H 1.08994 * 110.40929 * 142.62928 * 7 6 4 32 32 H 1.08997 * 110.41188 * 265.07608 * 7 6 4 33 33 H 1.09002 * 109.47404 * 54.26360 * 9 8 7 34 34 H 1.09001 * 109.47534 * 174.27384 * 9 8 7 35 35 H 0.96695 * 113.99965 * 300.00311 * 12 10 9 36 36 H 0.97000 * 119.99876 * 180.02562 * 16 15 13 37 37 H 1.08990 * 110.41505 * 280.70661 * 21 8 7 38 38 H 1.08996 * 110.41014 * 158.25758 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6938 -0.2110 2.1480 6 6 1.5668 -2.1896 1.2508 7 6 2.8625 -3.0287 1.2353 8 7 3.8975 -2.1298 1.8080 9 6 5.2458 -2.5647 1.4197 10 6 5.5448 -3.9252 2.0527 11 1 4.7925 -4.6470 1.7349 12 8 5.5178 -3.8044 3.4764 13 6 6.9081 -4.3945 1.6142 14 1 7.5017 -3.7837 0.9501 15 6 7.3976 -5.6036 2.0608 16 7 6.6750 -6.3471 2.8699 17 14 9.0872 -6.1856 1.5167 18 1 10.1124 -5.2019 1.9488 19 1 9.3780 -7.5054 2.1322 20 1 9.1146 -6.3119 0.0374 21 6 3.5819 -0.7968 1.2328 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9562 0.8901 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 0.9899 -2.4004 2.1513 30 1 0.9697 -2.3959 0.3625 31 1 2.7468 -3.9181 1.8546 32 1 3.1233 -3.3066 0.2141 33 1 5.3020 -2.6488 0.3344 34 1 5.9770 -1.8342 1.7659 35 1 6.1629 -3.1771 3.8302 36 1 7.0195 -7.1976 3.1844 37 1 3.9551 -0.7255 0.2113 38 1 4.0077 -0.0060 1.8503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929820894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:48 Heat of formation + Delta-G solvation = -66.877469 kcal Electronic energy + Delta-G solvation = -16388.510496 eV Core-core repulsion = 13844.041265 eV Total energy + Delta-G solvation = -2544.469231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12260 -36.12542 -34.49947 -32.04408 -30.75372 -28.71191 -27.29506 -26.92636 -24.36694 -21.69701 -21.44150 -20.04456 -19.09258 -16.94859 -15.68916 -15.25151 -14.66147 -14.47830 -14.09850 -13.96134 -13.57158 -13.08847 -12.92285 -12.68283 -12.28737 -12.12986 -11.81302 -11.54433 -11.15878 -11.04762 -10.95444 -10.87173 -10.73550 -10.53165 -10.38231 -10.32299 -10.10065 -10.00382 -8.93895 -8.53386 -8.03950 -7.73064 -5.96966 -4.15549 3.30546 3.35779 3.37432 4.37420 4.54453 4.75805 4.83119 4.98276 5.17395 5.30304 5.34730 5.46356 5.56491 5.59046 5.67879 5.76927 5.78315 5.96341 6.01289 6.08094 6.09884 6.12443 6.14127 6.26520 6.29517 6.42656 6.50929 6.58974 6.62946 6.85998 7.44139 7.66634 7.79823 7.90867 8.24481 8.88367 9.50092 9.66763 11.07183 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054750 B = 0.005435 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.295560 B = 5150.337965 C = 5318.413559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.085 4.085 5 H 0.075 0.925 6 C -0.120 4.120 7 C 0.036 3.964 8 N -0.499 5.499 9 C 0.020 3.980 10 C 0.238 3.762 11 H 0.053 0.947 12 O -0.555 6.555 13 C -0.576 4.576 14 H 0.053 0.947 15 C 0.080 3.920 16 N -0.859 5.859 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.035 3.965 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.342 0.658 36 H 0.261 0.739 37 H 0.036 0.964 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 11.716 -5.171 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.104 4.104 5 H 0.093 0.907 6 C -0.158 4.158 7 C -0.092 4.092 8 N -0.223 5.223 9 C -0.108 4.108 10 C 0.180 3.820 11 H 0.071 0.929 12 O -0.357 6.357 13 C -0.614 4.614 14 H 0.072 0.928 15 C -0.126 4.126 16 N -0.495 5.495 17 Si 0.716 3.284 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.094 4.094 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.247 11.085 -4.543 15.764 hybrid contribution 1.579 0.017 -1.282 2.034 sum -8.669 11.101 -5.826 15.242 Atomic orbital electron populations 1.21871 0.95377 1.01837 1.01341 1.21205 0.95572 0.96102 0.98018 1.21848 1.01281 0.95961 1.01340 1.21935 0.95103 0.95830 0.97569 0.90663 1.22417 0.97486 0.94316 1.01582 1.23050 0.91117 0.97124 0.97933 1.65442 1.02863 1.00722 1.53244 1.23232 0.88507 1.01308 0.97744 1.19288 0.95615 0.88210 0.78899 0.92883 1.86555 1.60558 1.65713 1.22829 1.21642 1.03242 1.05095 1.31421 0.92844 1.25020 0.97164 0.96250 0.94155 1.70078 1.36728 1.11740 1.30909 0.86741 0.84735 0.78013 0.78892 1.20136 1.21165 1.20232 1.23173 0.94691 0.93911 0.97595 0.92774 0.92405 0.93098 0.91454 0.92742 0.92505 0.93095 0.91409 0.91671 0.89862 0.94513 0.95495 0.91927 0.81457 0.92956 0.94571 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.96 37.16 0.33 -1.05 16 2 C -0.09 -0.97 2.21 -90.62 -0.20 -1.17 16 3 C -0.15 -1.43 9.00 37.16 0.33 -1.10 16 4 C -0.09 -1.11 2.63 -89.24 -0.23 -1.34 16 5 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.12 -1.67 6.11 -25.35 -0.15 -1.83 16 7 C 0.04 0.64 5.57 -2.18 -0.01 0.63 16 8 N -0.50 -9.54 5.30 -229.97 -1.22 -10.76 16 9 C 0.02 0.44 4.42 -3.82 -0.02 0.42 16 10 C 0.24 6.20 2.78 -27.88 -0.08 6.13 16 11 H 0.05 1.52 7.01 -51.93 -0.36 1.15 16 12 O -0.55 -14.94 12.63 -35.23 -0.44 -15.39 16 13 C -0.58 -16.12 8.76 -34.44 -0.30 -16.42 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 16 N -0.86 -25.83 12.84 55.43 0.71 -25.12 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.03 0.53 5.02 -2.18 -0.01 0.52 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.54 6.59 -51.93 -0.34 0.20 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.06 0.80 6.49 -51.93 -0.34 0.46 16 31 H 0.08 1.64 7.66 -51.93 -0.40 1.24 16 32 H 0.04 0.66 7.89 -51.93 -0.41 0.25 16 33 H 0.03 0.58 7.97 -51.93 -0.41 0.16 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.34 8.30 9.04 45.56 0.41 8.72 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.04 0.55 7.61 -51.93 -0.40 0.16 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -30.45 299.34 -7.87 -38.33 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.97 Total: 5.09 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.44 Total: -13.03 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.51 Total: -35.88 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.44 Total: -15.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.45 -7.87 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929820894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.550 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds