Wall clock time and date at job start Sun Mar 29 2020 21:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47538 * 2 1 4 4 C 1.52999 * 109.47236 * 120.00481 * 2 1 3 5 5 H 1.09003 * 110.28218 * 299.32646 * 4 2 1 6 6 C 1.54259 * 110.32505 * 61.44865 * 4 2 1 7 7 C 1.54379 * 105.06181 * 118.89888 * 6 4 2 8 8 N 1.48559 * 104.59425 * 23.85490 * 7 6 4 9 9 C 1.46894 * 111.00449 * 200.96353 * 8 7 6 10 10 C 1.53009 * 109.46730 * 294.27380 * 9 8 7 11 11 H 1.08997 * 109.47089 * 57.96372 * 10 9 8 12 12 O 1.42904 * 109.46860 * 297.96273 * 10 9 8 13 13 C 1.50700 * 109.47123 * 177.96598 * 10 9 8 14 14 H 1.08005 * 119.99971 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00158 * 179.97438 * 13 10 9 16 16 N 1.31520 * 119.99806 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00076 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46817 * 60.00342 * 17 15 13 19 19 H 1.48504 * 109.46695 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47009 * 299.99896 * 17 15 13 21 21 C 1.48568 * 104.22049 * 320.51547 * 8 7 6 22 22 H 1.08995 * 109.46960 * 299.99905 * 1 2 3 23 23 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47024 * 59.99549 * 1 2 3 25 25 H 1.09005 * 109.46891 * 240.00073 * 2 1 3 26 26 H 1.09006 * 109.46447 * 60.00144 * 3 2 1 27 27 H 1.08992 * 109.47303 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46925 * 300.00455 * 3 2 1 29 29 H 1.09007 * 110.32695 * 237.79984 * 6 4 2 30 30 H 1.09007 * 110.32730 * 359.90054 * 6 4 2 31 31 H 1.08994 * 110.40929 * 142.62928 * 7 6 4 32 32 H 1.08997 * 110.41188 * 265.07608 * 7 6 4 33 33 H 1.09002 * 109.47404 * 54.26360 * 9 8 7 34 34 H 1.09001 * 109.47534 * 174.27384 * 9 8 7 35 35 H 0.96695 * 113.99965 * 300.00311 * 12 10 9 36 36 H 0.97000 * 119.99876 * 180.02562 * 16 15 13 37 37 H 1.08990 * 110.41505 * 280.70661 * 21 8 7 38 38 H 1.08996 * 110.41014 * 158.25758 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6938 -0.2110 2.1480 6 6 1.5668 -2.1896 1.2508 7 6 2.8625 -3.0287 1.2353 8 7 3.8975 -2.1298 1.8080 9 6 5.2458 -2.5647 1.4197 10 6 5.5448 -3.9252 2.0527 11 1 4.7925 -4.6470 1.7349 12 8 5.5178 -3.8044 3.4764 13 6 6.9081 -4.3945 1.6142 14 1 7.5017 -3.7837 0.9501 15 6 7.3976 -5.6036 2.0608 16 7 6.6750 -6.3471 2.8699 17 14 9.0872 -6.1856 1.5167 18 1 10.1124 -5.2019 1.9488 19 1 9.3780 -7.5054 2.1322 20 1 9.1146 -6.3119 0.0374 21 6 3.5819 -0.7968 1.2328 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9562 0.8901 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 0.9899 -2.4004 2.1513 30 1 0.9697 -2.3959 0.3625 31 1 2.7468 -3.9181 1.8546 32 1 3.1233 -3.3066 0.2141 33 1 5.3020 -2.6488 0.3344 34 1 5.9770 -1.8342 1.7659 35 1 6.1629 -3.1771 3.8302 36 1 7.0195 -7.1976 3.1844 37 1 3.9551 -0.7255 0.2113 38 1 4.0077 -0.0060 1.8503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929820894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:48 Heat of formation + Delta-G solvation = -88.876787 kcal Electronic energy + Delta-G solvation = -16389.464458 eV Core-core repulsion = 13844.041265 eV Total energy + Delta-G solvation = -2545.423193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.40953 -37.84629 -35.92191 -34.23631 -32.18603 -30.08122 -28.96588 -27.78805 -26.20523 -23.18353 -22.71892 -21.55677 -20.25671 -19.05418 -16.95699 -16.70762 -16.64210 -16.15095 -15.65373 -15.50902 -14.75019 -14.55954 -14.25951 -13.93381 -13.58218 -13.41802 -13.04623 -12.87588 -12.83419 -12.74902 -12.54295 -12.22060 -12.14562 -11.99618 -11.89118 -11.41735 -11.40412 -11.14635 -11.00236 -10.70334 -10.09534 -9.28749 -8.14186 -6.41271 1.39701 1.41924 1.50208 2.37864 3.10977 3.17348 3.67636 3.77597 3.90177 4.21453 4.23425 4.29650 4.37024 4.46505 4.52441 4.62821 4.66383 4.76323 4.82158 4.87798 4.94728 5.00314 5.01741 5.07500 5.13866 5.18644 5.32386 5.32885 5.50651 5.56294 5.59198 5.73041 5.97239 6.09787 6.20342 6.72167 7.33174 7.59852 8.90349 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054750 B = 0.005435 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.295560 B = 5150.337965 C = 5318.413559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.077 4.077 5 H 0.081 0.919 6 C -0.111 4.111 7 C 0.033 3.967 8 N -0.517 5.517 9 C 0.038 3.962 10 C 0.239 3.761 11 H 0.018 0.982 12 O -0.571 6.571 13 C -0.592 4.592 14 H 0.059 0.941 15 C 0.026 3.974 16 N -0.900 5.900 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.035 3.965 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.353 0.647 36 H 0.262 0.738 37 H 0.039 0.961 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 13.223 -6.087 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.096 4.096 5 H 0.100 0.900 6 C -0.149 4.149 7 C -0.095 4.095 8 N -0.240 5.240 9 C -0.090 4.090 10 C 0.181 3.819 11 H 0.035 0.965 12 O -0.375 6.375 13 C -0.631 4.631 14 H 0.077 0.923 15 C -0.176 4.176 16 N -0.537 5.537 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.092 4.092 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.352 12.617 -5.469 17.213 hybrid contribution 1.572 -0.442 -0.975 1.902 sum -8.781 12.175 -6.445 16.336 Atomic orbital electron populations 1.21851 0.94003 1.02087 1.02257 1.21168 0.96659 0.96378 0.96296 1.21836 1.00843 0.95304 1.02307 1.21918 0.93137 0.95359 0.99215 0.90020 1.22387 0.95516 0.94207 1.02766 1.23029 0.93024 0.96771 0.96702 1.65358 1.01762 1.02714 1.54188 1.22833 0.90403 0.98804 0.96981 1.19138 0.94064 0.89980 0.78751 0.96461 1.86497 1.61057 1.66400 1.23516 1.22038 1.04090 1.05521 1.31411 0.92300 1.25924 1.01385 0.96310 0.94022 1.70227 1.38876 1.12227 1.32381 0.85578 0.79539 0.77538 0.78709 1.19059 1.20864 1.19308 1.23250 0.96676 0.91716 0.97575 0.92233 0.92504 0.91866 0.92094 0.92135 0.93205 0.91829 0.91090 0.89658 0.92911 0.95094 0.95707 0.91358 0.80322 0.92931 0.94294 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.96 71.98 0.64 -1.63 16 2 C -0.09 -1.64 2.21 -10.79 -0.02 -1.66 16 3 C -0.15 -2.44 9.00 71.98 0.65 -1.79 16 4 C -0.08 -1.85 2.63 -9.90 -0.03 -1.88 16 5 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.11 -2.95 6.11 31.49 0.19 -2.76 16 7 C 0.03 1.19 5.57 86.45 0.48 1.68 16 8 N -0.52 -19.76 5.30 -881.51 -4.68 -24.44 16 9 C 0.04 1.67 4.42 86.31 0.38 2.05 16 10 C 0.24 12.79 2.78 29.85 0.08 12.87 16 11 H 0.02 1.05 7.01 -2.39 -0.02 1.04 16 12 O -0.57 -31.57 12.63 -148.98 -1.88 -33.45 16 13 C -0.59 -33.52 8.76 25.60 0.22 -33.29 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.03 1.49 5.40 84.65 0.46 1.95 16 16 N -0.90 -55.19 12.84 21.45 0.28 -54.92 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.04 1.04 5.02 86.45 0.43 1.48 16 22 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.91 6.59 -2.39 -0.02 0.89 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.26 8.12 -2.38 -0.02 1.24 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 27 H 0.05 0.90 7.29 -2.39 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.08 1.93 6.49 -2.38 -0.02 1.92 16 31 H 0.05 2.20 7.66 -2.39 -0.02 2.18 16 32 H 0.03 1.13 7.89 -2.39 -0.02 1.11 16 33 H 0.02 1.07 7.97 -2.39 -0.02 1.05 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.35 17.40 9.04 -74.06 -0.67 16.73 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.04 1.13 7.61 -2.39 -0.02 1.12 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -65.48 299.34 -0.42 -65.89 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.34 Total: 23.96 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.50 Total: -22.99 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -4.40 Total: -79.36 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.88 Total: -33.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.48 -0.42 -65.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929820894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.982 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds