Wall clock time and date at job start Sun Mar 29 2020 22:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.50450 * 2 1 4 4 C 1.53040 * 109.50194 * 120.07237 * 2 1 3 5 5 N 1.46844 * 109.52401 * 179.16269 * 4 2 1 6 6 C 1.46902 * 111.00157 * 174.15997 * 5 4 2 7 7 C 1.52999 * 109.47259 * 293.87685 * 6 5 4 8 8 H 1.09000 * 109.46804 * 60.66305 * 7 6 5 9 9 O 1.42900 * 109.47239 * 300.66571 * 7 6 5 10 10 C 1.50698 * 109.47187 * 180.65789 * 7 6 5 11 11 H 1.07999 * 119.99828 * 0.02562 * 10 7 6 12 12 C 1.37883 * 120.00043 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99751 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00155 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47318 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47184 * 300.00210 * 14 12 10 17 17 H 1.48504 * 109.47153 * 59.99762 * 14 12 10 18 18 C 1.46843 * 111.19739 * 298.25763 * 5 4 2 19 19 C 1.53042 * 109.52451 * 61.74342 * 18 5 4 20 20 C 1.53112 * 109.54181 * 239.89557 * 2 1 3 21 21 H 1.09008 * 109.52075 * 302.35706 * 20 2 1 22 22 C 1.53004 * 109.52079 * 62.47800 * 20 2 1 23 23 H 1.09003 * 109.47378 * 299.92679 * 1 2 3 24 24 H 1.08995 * 109.47076 * 59.92545 * 1 2 3 25 25 H 1.09006 * 109.46845 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46769 * 59.14534 * 4 2 1 27 27 H 1.09007 * 109.45676 * 299.17215 * 4 2 1 28 28 H 1.09003 * 109.47242 * 173.87975 * 6 5 4 29 29 H 1.09002 * 109.46978 * 53.87700 * 6 5 4 30 30 H 0.96705 * 113.99746 * 299.99188 * 9 7 6 31 31 H 0.96999 * 119.99808 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.46313 * 181.75636 * 18 5 4 33 33 H 1.08993 * 109.46510 * 301.72237 * 18 5 4 34 34 H 1.08996 * 109.50194 * 180.88029 * 19 18 5 35 35 H 1.09001 * 109.53514 * 60.77818 * 19 18 5 36 36 H 1.09003 * 109.46962 * 60.00103 * 22 20 2 37 37 H 1.09003 * 109.46897 * 180.02562 * 22 20 2 38 38 H 1.09003 * 109.47298 * 300.00473 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7229 1.2484 5 7 3.5092 -0.7407 1.2388 6 6 4.0370 -1.3039 2.4887 7 6 3.6936 -0.3724 3.6529 8 1 2.6108 -0.2794 3.7365 9 8 4.2655 0.9157 3.4170 10 6 4.2491 -0.9421 4.9327 11 1 4.7931 -1.8749 4.9172 12 6 4.0629 -0.2723 6.1234 13 7 3.4000 0.8634 6.1423 14 14 4.7520 -0.9780 7.7097 15 1 4.4176 -0.0746 8.8399 16 1 4.1587 -2.3171 7.9547 17 1 6.2273 -1.1037 7.5957 18 6 4.0237 -1.4715 0.0737 19 6 3.5720 -0.7710 -1.2098 20 6 2.0421 -0.7237 -1.2483 21 1 1.6458 -1.7390 -1.2691 22 6 1.5851 0.0292 -2.4994 23 1 -0.3634 0.5127 0.8906 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6653 -1.7461 1.2549 27 1 1.6898 -0.2015 2.1391 28 1 5.1196 -1.4062 2.4125 29 1 3.5909 -2.2830 2.6630 30 1 5.2288 0.9088 3.3318 31 1 3.2687 1.3344 6.9801 32 1 5.1128 -1.4941 0.1111 33 1 3.6389 -2.4912 0.0856 34 1 3.9410 -1.3225 -2.0745 35 1 3.9680 0.2444 -1.2296 36 1 1.9837 1.0435 -2.4789 37 1 1.9498 -0.4870 -3.3875 38 1 0.4960 0.0672 -2.5231 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930143802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:23 Heat of formation + Delta-G solvation = -69.813927 kcal Electronic energy + Delta-G solvation = -16672.494888 eV Core-core repulsion = 14127.898322 eV Total energy + Delta-G solvation = -2544.596566 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10655 -35.99842 -33.93761 -32.03264 -31.90066 -29.14446 -27.17638 -26.17839 -24.15249 -22.17630 -21.22093 -19.98334 -19.32438 -16.94373 -15.03111 -14.94890 -14.65118 -14.40620 -14.37966 -14.08128 -13.52451 -13.23804 -13.04790 -12.40065 -12.28424 -11.87229 -11.71856 -11.58710 -11.45354 -11.10291 -10.87733 -10.79806 -10.73714 -10.56159 -10.29920 -10.09119 -9.86361 -9.78246 -8.90405 -8.51930 -8.03502 -7.53259 -5.96538 -4.14835 3.30846 3.36123 3.37777 4.36082 4.54769 4.91579 4.95586 5.02327 5.30917 5.34877 5.59642 5.60817 5.68866 5.73196 5.80261 5.84698 5.92910 5.99555 6.08600 6.12729 6.16748 6.18739 6.24339 6.40155 6.42044 6.46649 6.59709 6.64629 6.75604 6.88292 7.65491 7.74445 7.83997 7.95139 8.25549 8.89169 9.51081 9.67965 11.07582 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.006222 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.646737 B = 4499.336062 C = 4758.929367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.079 0.921 4 C 0.063 3.937 5 N -0.526 5.526 6 C 0.031 3.969 7 C 0.238 3.762 8 H 0.054 0.946 9 O -0.553 6.553 10 C -0.575 4.575 11 H 0.053 0.947 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.889 3.111 15 H -0.286 1.286 16 H -0.277 1.277 17 H -0.276 1.276 18 C 0.054 3.946 19 C -0.109 4.109 20 C -0.088 4.088 21 H 0.061 0.939 22 C -0.146 4.146 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.342 0.658 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -3.130 -13.680 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.066 4.066 5 N -0.250 5.250 6 C -0.096 4.096 7 C 0.180 3.820 8 H 0.071 0.929 9 O -0.355 6.355 10 C -0.613 4.613 11 H 0.071 0.929 12 C -0.126 4.126 13 N -0.495 5.495 14 Si 0.716 3.284 15 H -0.212 1.212 16 H -0.203 1.203 17 H -0.201 1.201 18 C -0.074 4.074 19 C -0.147 4.147 20 C -0.106 4.106 21 H 0.080 0.920 22 C -0.203 4.203 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.185 0.815 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.177 -2.313 -13.571 14.129 hybrid contribution 0.692 -1.591 1.036 2.021 sum -2.485 -3.904 -12.535 13.362 Atomic orbital electron populations 1.21840 0.95579 1.01376 1.01655 1.21181 0.94631 1.00514 0.93859 0.90303 1.22121 0.87984 0.97945 0.98500 1.61904 1.07404 1.53638 1.02092 1.23062 0.98891 0.97345 0.90339 1.19303 0.94732 0.80083 0.87930 0.92880 1.86556 1.22232 1.32009 1.94687 1.21641 1.38275 1.08418 0.93008 0.92862 1.25016 0.94281 0.94464 0.98826 1.70073 1.38571 1.14430 1.26387 0.86747 0.79632 0.78960 0.83064 1.21188 1.20253 1.20149 1.22067 0.99552 0.94545 0.91277 1.21621 0.95146 1.01508 0.96414 1.21204 0.95640 0.99010 0.94785 0.92028 1.21861 1.00972 1.00409 0.97046 0.92446 0.92637 0.93186 0.96135 0.89807 0.91975 0.95834 0.81519 0.92971 0.91408 0.96080 0.92366 0.91146 0.92656 0.93254 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.90 37.16 0.33 -1.52 16 2 C -0.08 -1.22 2.38 -90.54 -0.22 -1.43 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.06 1.12 4.58 -3.83 -0.02 1.10 16 5 N -0.53 -9.92 4.51 -234.67 -1.06 -10.98 16 6 C 0.03 0.66 4.57 -3.82 -0.02 0.65 16 7 C 0.24 6.13 2.69 -27.88 -0.08 6.06 16 8 H 0.05 1.50 6.47 -51.93 -0.34 1.17 16 9 O -0.55 -14.71 12.59 -35.23 -0.44 -15.15 16 10 C -0.57 -16.01 8.76 -34.44 -0.30 -16.31 16 11 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 12 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 13 N -0.86 -25.71 12.84 55.43 0.71 -25.00 16 14 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.05 0.84 5.46 -3.83 -0.02 0.82 16 19 C -0.11 -1.44 5.38 -26.65 -0.14 -1.59 16 20 C -0.09 -1.12 2.29 -90.50 -0.21 -1.32 16 21 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 22 C -0.15 -1.54 8.91 37.16 0.33 -1.21 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.61 6.51 -51.93 -0.34 0.27 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 1.72 6.24 -51.92 -0.32 1.40 16 28 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 29 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.34 8.21 9.04 45.56 0.41 8.63 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.54 6.51 -51.93 -0.34 0.20 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -30.01 296.46 -7.72 -37.73 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.95 Total: 5.19 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.43 Total: -12.58 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.35 Total: -35.98 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.44 Total: -15.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.01 -7.72 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.083 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds