Wall clock time and date at job start Sun Mar 29 2020 22:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.50450 * 2 1 4 4 C 1.53040 * 109.50194 * 120.07237 * 2 1 3 5 5 N 1.46844 * 109.52401 * 179.16269 * 4 2 1 6 6 C 1.46902 * 111.00157 * 174.15997 * 5 4 2 7 7 C 1.52999 * 109.47259 * 293.87685 * 6 5 4 8 8 H 1.09000 * 109.46804 * 60.66305 * 7 6 5 9 9 O 1.42900 * 109.47239 * 300.66571 * 7 6 5 10 10 C 1.50698 * 109.47187 * 180.65789 * 7 6 5 11 11 H 1.07999 * 119.99828 * 0.02562 * 10 7 6 12 12 C 1.37883 * 120.00043 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99751 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 120.00155 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47318 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47184 * 300.00210 * 14 12 10 17 17 H 1.48504 * 109.47153 * 59.99762 * 14 12 10 18 18 C 1.46843 * 111.19739 * 298.25763 * 5 4 2 19 19 C 1.53042 * 109.52451 * 61.74342 * 18 5 4 20 20 C 1.53112 * 109.54181 * 239.89557 * 2 1 3 21 21 H 1.09008 * 109.52075 * 302.35706 * 20 2 1 22 22 C 1.53004 * 109.52079 * 62.47800 * 20 2 1 23 23 H 1.09003 * 109.47378 * 299.92679 * 1 2 3 24 24 H 1.08995 * 109.47076 * 59.92545 * 1 2 3 25 25 H 1.09006 * 109.46845 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46769 * 59.14534 * 4 2 1 27 27 H 1.09007 * 109.45676 * 299.17215 * 4 2 1 28 28 H 1.09003 * 109.47242 * 173.87975 * 6 5 4 29 29 H 1.09002 * 109.46978 * 53.87700 * 6 5 4 30 30 H 0.96705 * 113.99746 * 299.99188 * 9 7 6 31 31 H 0.96999 * 119.99808 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.46313 * 181.75636 * 18 5 4 33 33 H 1.08993 * 109.46510 * 301.72237 * 18 5 4 34 34 H 1.08996 * 109.50194 * 180.88029 * 19 18 5 35 35 H 1.09001 * 109.53514 * 60.77818 * 19 18 5 36 36 H 1.09003 * 109.46962 * 60.00103 * 22 20 2 37 37 H 1.09003 * 109.46897 * 180.02562 * 22 20 2 38 38 H 1.09003 * 109.47298 * 300.00473 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7229 1.2484 5 7 3.5092 -0.7407 1.2388 6 6 4.0370 -1.3039 2.4887 7 6 3.6936 -0.3724 3.6529 8 1 2.6108 -0.2794 3.7365 9 8 4.2655 0.9157 3.4170 10 6 4.2491 -0.9421 4.9327 11 1 4.7931 -1.8749 4.9172 12 6 4.0629 -0.2723 6.1234 13 7 3.4000 0.8634 6.1423 14 14 4.7520 -0.9780 7.7097 15 1 4.4176 -0.0746 8.8399 16 1 4.1587 -2.3171 7.9547 17 1 6.2273 -1.1037 7.5957 18 6 4.0237 -1.4715 0.0737 19 6 3.5720 -0.7710 -1.2098 20 6 2.0421 -0.7237 -1.2483 21 1 1.6458 -1.7390 -1.2691 22 6 1.5851 0.0292 -2.4994 23 1 -0.3634 0.5127 0.8906 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6653 -1.7461 1.2549 27 1 1.6898 -0.2015 2.1391 28 1 5.1196 -1.4062 2.4125 29 1 3.5909 -2.2830 2.6630 30 1 5.2288 0.9088 3.3318 31 1 3.2687 1.3344 6.9801 32 1 5.1128 -1.4941 0.1111 33 1 3.6389 -2.4912 0.0856 34 1 3.9410 -1.3225 -2.0745 35 1 3.9680 0.2444 -1.2296 36 1 1.9837 1.0435 -2.4789 37 1 1.9498 -0.4870 -3.3875 38 1 0.4960 0.0672 -2.5231 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930143802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:23 Heat of formation + Delta-G solvation = -91.084537 kcal Electronic energy + Delta-G solvation = -16673.417251 eV Core-core repulsion = 14127.898322 eV Total energy + Delta-G solvation = -2545.518929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41958 -37.81307 -35.47833 -34.21083 -33.07888 -30.73175 -28.67467 -27.55471 -25.88879 -23.49239 -22.55908 -21.72078 -20.49306 -19.04683 -16.67931 -16.59877 -16.42671 -16.14897 -15.50420 -15.40358 -15.07742 -14.87577 -14.46794 -13.87641 -13.60475 -13.16632 -13.03043 -12.87929 -12.78065 -12.72330 -12.63036 -12.55687 -12.22005 -11.99390 -11.88234 -11.46360 -11.16745 -11.01298 -10.84327 -10.66261 -10.07817 -9.07405 -8.13190 -6.39871 1.40053 1.42137 1.50391 2.38307 3.06223 3.13255 3.80225 3.87929 3.91859 4.15668 4.31516 4.34744 4.48150 4.50909 4.58248 4.62452 4.69281 4.73837 4.84680 4.89478 4.92800 4.96665 5.02834 5.12743 5.13757 5.24825 5.29507 5.37894 5.50100 5.59623 5.63248 5.75598 6.03600 6.25276 6.38144 6.73872 7.34496 7.62615 8.91267 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.006222 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.646737 B = 4499.336062 C = 4758.929367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 H 0.060 0.940 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.048 3.952 7 C 0.239 3.761 8 H 0.017 0.983 9 O -0.569 6.569 10 C -0.591 4.591 11 H 0.058 0.942 12 C 0.026 3.974 13 N -0.900 5.900 14 Si 0.962 3.038 15 H -0.284 1.284 16 H -0.269 1.269 17 H -0.266 1.266 18 C 0.051 3.949 19 C -0.104 4.104 20 C -0.084 4.084 21 H 0.067 0.933 22 C -0.140 4.140 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.023 0.977 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.352 0.648 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -4.245 -15.068 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.064 4.064 5 N -0.263 5.263 6 C -0.080 4.080 7 C 0.181 3.819 8 H 0.035 0.965 9 O -0.372 6.372 10 C -0.629 4.629 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.537 5.537 14 Si 0.786 3.214 15 H -0.209 1.209 16 H -0.194 1.194 17 H -0.191 1.191 18 C -0.076 4.076 19 C -0.142 4.142 20 C -0.103 4.103 21 H 0.086 0.914 22 C -0.198 4.198 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.196 0.804 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.721 -3.441 -14.981 15.610 hybrid contribution 0.543 -1.230 1.443 1.972 sum -2.178 -4.672 -13.538 14.486 Atomic orbital electron populations 1.21815 0.93969 1.02089 1.02148 1.21145 0.95985 0.99211 0.93418 0.92133 1.22086 0.87639 0.97935 0.98712 1.61856 1.07945 1.54392 1.02134 1.22673 0.99266 0.95801 0.90263 1.19148 0.92639 0.80573 0.89581 0.96479 1.86501 1.23121 1.32761 1.94819 1.22040 1.38135 1.08628 0.94145 0.92337 1.25915 0.94452 0.94682 1.02591 1.70224 1.40092 1.16034 1.27363 0.85589 0.79224 0.78284 0.78324 1.20911 1.19377 1.19056 1.22194 0.99875 0.94742 0.90813 1.21622 0.95527 1.01101 0.95949 1.21187 0.95251 0.99283 0.94538 0.91446 1.21814 1.01617 1.00021 0.96299 0.93763 0.90360 0.92340 0.95911 0.93715 0.91245 0.96212 0.80432 0.92967 0.90860 0.95531 0.89492 0.92021 0.92990 0.91517 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.90 71.98 0.64 -2.82 16 2 C -0.08 -2.27 2.38 -10.74 -0.03 -2.30 16 3 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.06 2.36 4.58 86.33 0.40 2.75 16 5 N -0.54 -20.41 4.51 -896.35 -4.04 -24.46 16 6 C 0.05 2.08 4.57 86.30 0.39 2.47 16 7 C 0.24 12.73 2.69 29.85 0.08 12.81 16 8 H 0.02 1.04 6.47 -2.39 -0.02 1.03 16 9 O -0.57 -31.20 12.59 -148.98 -1.87 -33.07 16 10 C -0.59 -33.37 8.76 25.60 0.22 -33.15 16 11 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 12 C 0.03 1.49 5.40 84.66 0.46 1.94 16 13 N -0.90 -55.15 12.84 21.45 0.28 -54.87 16 14 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.05 1.52 5.46 86.33 0.47 1.99 16 19 C -0.10 -2.50 5.38 30.65 0.16 -2.34 16 20 C -0.08 -1.93 2.29 -10.72 -0.02 -1.96 16 21 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 22 C -0.14 -2.52 8.91 71.98 0.64 -1.88 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.54 6.51 -2.39 -0.02 1.53 16 25 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.04 1.96 6.24 -2.38 -0.01 1.95 16 28 H 0.07 2.87 7.98 -2.39 -0.02 2.85 16 29 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.35 17.26 9.04 -74.05 -0.67 16.59 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.05 6.51 -2.39 -0.02 1.03 16 Total: -1.00 -65.24 296.46 0.15 -65.09 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.35 Total: 23.80 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.42 Total: -22.47 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -3.77 Total: -79.33 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.87 Total: -33.07 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.24 0.15 -65.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.994 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds