Wall clock time and date at job start Sun Mar 29 2020 22:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.57103 * 2 1 4 4 C 1.53119 * 109.52363 * 239.84215 * 2 1 3 5 5 C 1.53032 * 109.28019 * 182.44106 * 4 2 1 6 6 N 1.46847 * 109.52679 * 59.17551 * 5 4 2 7 7 C 1.46891 * 111.00540 * 174.16426 * 6 5 4 8 8 C 1.53009 * 109.47054 * 293.88004 * 7 6 5 9 9 H 1.09006 * 109.46794 * 60.66134 * 8 7 6 10 10 O 1.42896 * 109.46896 * 300.66323 * 8 7 6 11 11 C 1.50696 * 109.47118 * 180.65852 * 8 7 6 12 12 H 1.08001 * 120.00104 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99889 * 179.72155 * 11 8 7 14 14 N 1.31523 * 119.99697 * 0.28325 * 13 11 8 15 15 Si 1.86796 * 120.00114 * 180.27760 * 13 11 8 16 16 H 1.48499 * 109.47100 * 90.00238 * 15 13 11 17 17 H 1.48509 * 109.47109 * 210.00335 * 15 13 11 18 18 H 1.48497 * 109.47245 * 330.00170 * 15 13 11 19 19 C 1.46848 * 111.19818 * 298.26402 * 6 5 4 20 20 C 1.53033 * 109.52436 * 61.73670 * 19 6 5 21 21 H 1.09001 * 109.50389 * 60.76509 * 20 19 6 22 22 C 1.53001 * 109.50240 * 180.88011 * 20 19 6 23 23 H 1.09000 * 109.46797 * 180.16168 * 1 2 3 24 24 H 1.08996 * 109.46800 * 300.15811 * 1 2 3 25 25 H 1.08996 * 109.47310 * 60.15876 * 1 2 3 26 26 H 1.09003 * 109.50348 * 62.49651 * 4 2 1 27 27 H 1.08999 * 109.53573 * 302.40064 * 4 2 1 28 28 H 1.09010 * 109.46092 * 299.16384 * 5 4 2 29 29 H 1.08997 * 109.45683 * 179.18831 * 5 4 2 30 30 H 1.08993 * 109.47527 * 173.88329 * 7 6 5 31 31 H 1.09004 * 109.47450 * 53.87760 * 7 6 5 32 32 H 0.96703 * 113.99999 * 299.99396 * 10 8 7 33 33 H 0.97000 * 119.99513 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46317 * 181.75484 * 19 6 5 35 35 H 1.09004 * 109.45853 * 301.71964 * 19 6 5 36 36 H 1.09001 * 109.47235 * 179.80374 * 22 20 19 37 37 H 1.08997 * 109.47585 * 299.80462 * 22 20 19 38 38 H 1.09004 * 109.47443 * 59.80685 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0418 -0.7250 -1.2478 5 6 3.5708 -0.7752 -1.2117 6 7 4.0103 -1.4788 0.0000 7 6 5.4671 -1.6677 0.0001 8 6 5.8581 -2.6185 -1.1332 9 1 5.5573 -2.1882 -2.0885 10 8 5.2022 -3.8745 -0.9488 11 6 7.3509 -2.8249 -1.1230 12 1 7.9597 -2.3281 -0.3822 13 6 7.9386 -3.6531 -2.0557 14 7 7.1971 -4.2584 -2.9576 15 14 9.7880 -3.9151 -2.0383 16 1 10.1156 -5.0737 -1.1690 17 1 10.2631 -4.1827 -3.4197 18 1 10.4556 -2.6974 -1.5125 19 6 3.5709 -0.7751 1.2116 20 6 2.0418 -0.7250 1.2478 21 1 1.6448 -1.7400 1.2675 22 6 1.5848 0.0274 2.4992 23 1 -0.3633 -1.0277 0.0029 24 1 -0.3633 0.5163 0.8885 25 1 -0.3634 0.5113 -0.8914 26 1 1.7162 -0.1890 -2.1394 27 1 1.6448 -1.7399 -1.2682 28 1 3.9675 0.2402 -1.2060 29 1 3.9377 -1.3035 -2.0917 30 1 5.7784 -2.0924 0.9543 31 1 5.9582 -0.7057 -0.1470 32 1 5.4236 -4.3155 -0.1171 33 1 7.6106 -4.8407 -3.6139 34 1 3.9378 -1.3033 2.0917 35 1 3.9675 0.2402 1.2059 36 1 0.4957 0.0658 2.5226 37 1 1.9493 -0.4891 3.3871 38 1 1.9837 1.0416 2.4794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930143803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:25 Heat of formation + Delta-G solvation = -69.840235 kcal Electronic energy + Delta-G solvation = -16614.205902 eV Core-core repulsion = 14069.608195 eV Total energy + Delta-G solvation = -2544.597707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11886 -36.04231 -33.89989 -32.02513 -31.93966 -29.08169 -27.50712 -25.95875 -24.08347 -21.98707 -21.73053 -19.75198 -19.35953 -16.96251 -15.01624 -14.92038 -14.62054 -14.45020 -14.41655 -14.11006 -13.69784 -13.21043 -12.83790 -12.69749 -12.21373 -11.91677 -11.69700 -11.67404 -11.39938 -11.10983 -10.89398 -10.77856 -10.71924 -10.61300 -10.30355 -10.11120 -9.88464 -9.80547 -8.89472 -8.52772 -8.03155 -7.53250 -5.96785 -4.14968 3.29533 3.36389 3.38971 4.35680 4.54249 4.85142 4.96218 5.00691 5.30089 5.31656 5.54078 5.62689 5.66752 5.72067 5.75097 5.84887 5.90221 5.92384 6.02097 6.10589 6.13978 6.18935 6.26473 6.36933 6.43146 6.47171 6.56238 6.62435 6.74311 6.88128 7.65287 7.74606 7.84025 7.95059 8.25415 8.89220 9.50974 9.67907 11.07352 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053990 B = 0.005915 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.494687 B = 4732.712824 C = 4970.259237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.061 0.939 4 C -0.110 4.110 5 C 0.056 3.944 6 N -0.526 5.526 7 C 0.031 3.969 8 C 0.237 3.763 9 H 0.054 0.946 10 O -0.553 6.553 11 C -0.574 4.574 12 H 0.054 0.946 13 C 0.080 3.920 14 N -0.859 5.859 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.060 3.940 20 C -0.083 4.083 21 H 0.078 0.922 22 C -0.146 4.146 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.342 0.658 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 8.109 7.070 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.072 4.072 6 N -0.250 5.250 7 C -0.096 4.096 8 C 0.179 3.821 9 H 0.071 0.929 10 O -0.355 6.355 11 C -0.613 4.613 12 H 0.072 0.928 13 C -0.126 4.126 14 N -0.495 5.495 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.068 4.068 20 C -0.102 4.102 21 H 0.096 0.904 22 C -0.204 4.204 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.185 0.815 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.919 7.687 6.304 14.767 hybrid contribution 1.828 0.611 0.532 1.999 sum -9.091 8.298 6.836 14.080 Atomic orbital electron populations 1.21858 0.95596 1.01737 1.01094 1.21205 0.95145 0.98959 0.95312 0.92024 1.21635 0.95575 1.01042 0.96513 1.22075 0.94738 0.95747 0.94616 1.61900 1.14231 1.48158 1.00738 1.23058 0.84708 0.99563 1.02290 1.19314 0.90354 0.80781 0.91637 0.92868 1.86554 1.71040 1.35992 1.41892 1.21677 0.93119 1.30224 1.16248 0.92807 1.25020 0.97718 0.95048 0.94825 1.70089 1.34840 1.28291 1.16247 0.86687 0.85867 0.78563 0.77320 1.20519 1.21132 1.19921 1.22110 0.94626 0.96031 0.94048 1.21181 0.95250 0.99899 0.93884 0.90394 1.21848 1.00951 1.00068 0.97537 0.92647 0.92837 0.93085 0.92192 0.91013 0.96141 0.89783 0.91999 0.95825 0.81521 0.93034 0.91444 0.96054 0.92512 0.92838 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.90 37.16 0.33 -1.21 16 2 C -0.09 -1.11 2.29 -90.50 -0.21 -1.32 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.62 5.38 -26.65 -0.14 -1.76 16 5 C 0.06 1.00 5.29 -3.84 -0.02 0.98 16 6 N -0.53 -9.91 4.51 -234.67 -1.06 -10.97 16 7 C 0.03 0.67 4.57 -3.82 -0.02 0.65 16 8 C 0.24 6.12 2.70 -27.88 -0.08 6.04 16 9 H 0.05 1.51 6.47 -51.93 -0.34 1.17 16 10 O -0.55 -14.71 12.57 -35.23 -0.44 -15.15 16 11 C -0.57 -15.99 8.76 -34.44 -0.30 -16.29 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 14 N -0.86 -25.72 12.83 55.43 0.71 -25.01 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.06 0.94 4.74 -3.84 -0.02 0.92 16 20 C -0.08 -1.10 2.38 -90.54 -0.22 -1.31 16 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 22 C -0.15 -1.56 8.90 37.16 0.33 -1.23 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.50 6.52 -51.93 -0.34 0.16 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.08 1.71 6.24 -51.93 -0.32 1.39 16 30 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 31 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.34 8.22 9.04 45.56 0.41 8.63 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -30.04 296.44 -7.72 -37.76 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.95 Total: 4.92 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.43 Total: -12.35 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.35 Total: -35.97 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.44 Total: -15.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.04 -7.72 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.081 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds