Wall clock time and date at job start Sun Mar 29 2020 22:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.57103 * 2 1 4 4 C 1.53119 * 109.52363 * 239.84215 * 2 1 3 5 5 C 1.53032 * 109.28019 * 182.44106 * 4 2 1 6 6 N 1.46847 * 109.52679 * 59.17551 * 5 4 2 7 7 C 1.46891 * 111.00540 * 174.16426 * 6 5 4 8 8 C 1.53009 * 109.47054 * 293.88004 * 7 6 5 9 9 H 1.09006 * 109.46794 * 60.66134 * 8 7 6 10 10 O 1.42896 * 109.46896 * 300.66323 * 8 7 6 11 11 C 1.50696 * 109.47118 * 180.65852 * 8 7 6 12 12 H 1.08001 * 120.00104 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99889 * 179.72155 * 11 8 7 14 14 N 1.31523 * 119.99697 * 0.28325 * 13 11 8 15 15 Si 1.86796 * 120.00114 * 180.27760 * 13 11 8 16 16 H 1.48499 * 109.47100 * 90.00238 * 15 13 11 17 17 H 1.48509 * 109.47109 * 210.00335 * 15 13 11 18 18 H 1.48497 * 109.47245 * 330.00170 * 15 13 11 19 19 C 1.46848 * 111.19818 * 298.26402 * 6 5 4 20 20 C 1.53033 * 109.52436 * 61.73670 * 19 6 5 21 21 H 1.09001 * 109.50389 * 60.76509 * 20 19 6 22 22 C 1.53001 * 109.50240 * 180.88011 * 20 19 6 23 23 H 1.09000 * 109.46797 * 180.16168 * 1 2 3 24 24 H 1.08996 * 109.46800 * 300.15811 * 1 2 3 25 25 H 1.08996 * 109.47310 * 60.15876 * 1 2 3 26 26 H 1.09003 * 109.50348 * 62.49651 * 4 2 1 27 27 H 1.08999 * 109.53573 * 302.40064 * 4 2 1 28 28 H 1.09010 * 109.46092 * 299.16384 * 5 4 2 29 29 H 1.08997 * 109.45683 * 179.18831 * 5 4 2 30 30 H 1.08993 * 109.47527 * 173.88329 * 7 6 5 31 31 H 1.09004 * 109.47450 * 53.87760 * 7 6 5 32 32 H 0.96703 * 113.99999 * 299.99396 * 10 8 7 33 33 H 0.97000 * 119.99513 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46317 * 181.75484 * 19 6 5 35 35 H 1.09004 * 109.45853 * 301.71964 * 19 6 5 36 36 H 1.09001 * 109.47235 * 179.80374 * 22 20 19 37 37 H 1.08997 * 109.47585 * 299.80462 * 22 20 19 38 38 H 1.09004 * 109.47443 * 59.80685 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0418 -0.7250 -1.2478 5 6 3.5708 -0.7752 -1.2117 6 7 4.0103 -1.4788 0.0000 7 6 5.4671 -1.6677 0.0001 8 6 5.8581 -2.6185 -1.1332 9 1 5.5573 -2.1882 -2.0885 10 8 5.2022 -3.8745 -0.9488 11 6 7.3509 -2.8249 -1.1230 12 1 7.9597 -2.3281 -0.3822 13 6 7.9386 -3.6531 -2.0557 14 7 7.1971 -4.2584 -2.9576 15 14 9.7880 -3.9151 -2.0383 16 1 10.1156 -5.0737 -1.1690 17 1 10.2631 -4.1827 -3.4197 18 1 10.4556 -2.6974 -1.5125 19 6 3.5709 -0.7751 1.2116 20 6 2.0418 -0.7250 1.2478 21 1 1.6448 -1.7400 1.2675 22 6 1.5848 0.0274 2.4992 23 1 -0.3633 -1.0277 0.0029 24 1 -0.3633 0.5163 0.8885 25 1 -0.3634 0.5113 -0.8914 26 1 1.7162 -0.1890 -2.1394 27 1 1.6448 -1.7399 -1.2682 28 1 3.9675 0.2402 -1.2060 29 1 3.9377 -1.3035 -2.0917 30 1 5.7784 -2.0924 0.9543 31 1 5.9582 -0.7057 -0.1470 32 1 5.4236 -4.3155 -0.1171 33 1 7.6106 -4.8407 -3.6139 34 1 3.9378 -1.3033 2.0917 35 1 3.9675 0.2402 1.2059 36 1 0.4957 0.0658 2.5226 37 1 1.9493 -0.4891 3.3871 38 1 1.9837 1.0416 2.4794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930143803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:25 Heat of formation + Delta-G solvation = -91.081485 kcal Electronic energy + Delta-G solvation = -16615.126992 eV Core-core repulsion = 14069.608195 eV Total energy + Delta-G solvation = -2545.518796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41673 -37.84068 -35.45168 -34.20732 -33.07160 -30.71697 -28.90272 -27.38025 -25.72177 -23.39689 -23.06166 -21.43956 -20.48603 -19.06656 -16.68552 -16.58774 -16.37227 -16.11479 -15.63625 -15.42153 -15.09779 -14.81858 -14.42851 -14.01615 -13.53371 -13.20349 -12.92768 -12.89747 -12.76172 -12.71841 -12.63661 -12.48460 -12.25318 -12.01541 -11.87867 -11.44456 -11.23650 -10.98811 -10.83766 -10.67202 -10.07028 -9.07733 -8.13377 -6.39889 1.40206 1.40746 1.51743 2.38235 3.05977 3.13083 3.80332 3.87205 3.91496 4.15226 4.31283 4.34517 4.47680 4.50246 4.56498 4.65762 4.71063 4.76315 4.85507 4.85748 4.91861 4.96747 5.02793 5.11938 5.17029 5.25842 5.29926 5.35990 5.51844 5.60216 5.63177 5.75556 6.03447 6.24860 6.37748 6.73960 7.34482 7.62505 8.91260 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053990 B = 0.005915 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.494687 B = 4732.712824 C = 4970.259237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.067 0.933 4 C -0.104 4.104 5 C 0.056 3.944 6 N -0.538 5.538 7 C 0.048 3.952 8 C 0.238 3.762 9 H 0.019 0.981 10 O -0.569 6.569 11 C -0.590 4.590 12 H 0.058 0.942 13 C 0.026 3.974 14 N -0.900 5.900 15 Si 0.962 3.038 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.059 3.941 20 C -0.080 4.080 21 H 0.066 0.934 22 C -0.140 4.140 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.351 0.649 33 H 0.261 0.739 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 9.153 8.510 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.142 4.142 5 C -0.072 4.072 6 N -0.263 5.263 7 C -0.080 4.080 8 C 0.180 3.820 9 H 0.036 0.964 10 O -0.372 6.372 11 C -0.629 4.629 12 H 0.076 0.924 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.069 4.069 20 C -0.099 4.099 21 H 0.084 0.916 22 C -0.197 4.197 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.318 8.745 7.766 16.275 hybrid contribution 1.919 0.286 0.070 1.942 sum -9.399 9.031 7.836 15.208 Atomic orbital electron populations 1.21811 0.93518 1.01978 1.02435 1.21189 0.96812 0.98597 0.93645 0.91487 1.21606 0.92932 1.00924 0.98744 1.22047 0.97066 0.95089 0.92957 1.61851 1.12346 1.49650 1.02412 1.22670 0.86706 0.98115 1.00485 1.19161 0.89644 0.81314 0.91860 0.96365 1.86500 1.71199 1.36709 1.42775 1.22065 0.94318 1.30158 1.16310 0.92366 1.25913 1.02820 0.94655 0.94258 1.70235 1.37129 1.29206 1.17157 0.85531 0.79590 0.78823 0.77447 1.19659 1.20817 1.18955 1.22229 0.96567 0.95755 0.92322 1.21163 0.93157 0.99894 0.95641 0.91587 1.21796 1.02006 0.99892 0.96028 0.92966 0.91083 0.92214 0.90634 0.92437 0.95733 0.93431 0.91337 0.96180 0.80445 0.92973 0.91135 0.95627 0.90866 0.92373 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.90 71.98 0.64 -1.91 16 2 C -0.08 -1.95 2.29 -10.71 -0.02 -1.97 16 3 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.10 -3.01 5.38 30.65 0.16 -2.85 16 5 C 0.06 2.06 5.29 86.32 0.46 2.52 16 6 N -0.54 -20.40 4.51 -896.37 -4.04 -24.44 16 7 C 0.05 2.09 4.57 86.31 0.39 2.48 16 8 C 0.24 12.68 2.70 29.85 0.08 12.76 16 9 H 0.02 1.11 6.47 -2.38 -0.02 1.09 16 10 O -0.57 -31.13 12.57 -148.98 -1.87 -33.01 16 11 C -0.59 -33.28 8.76 25.60 0.22 -33.06 16 12 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 13 C 0.03 1.48 5.40 84.65 0.46 1.93 16 14 N -0.90 -55.05 12.83 21.45 0.28 -54.78 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C 0.06 1.76 4.74 86.32 0.41 2.17 16 20 C -0.08 -1.94 2.38 -10.74 -0.03 -1.97 16 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 22 C -0.14 -2.53 8.90 71.98 0.64 -1.89 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.06 6.52 -2.39 -0.02 1.05 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 2.06 6.24 -2.39 -0.01 2.04 16 30 H 0.07 2.84 7.98 -2.39 -0.02 2.82 16 31 H 0.02 0.87 8.12 -2.38 -0.02 0.85 16 32 H 0.35 17.25 9.04 -74.05 -0.67 16.58 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.07 2.05 8.01 -2.39 -0.02 2.03 16 35 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 1.11 6.51 -2.39 -0.02 1.09 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -64.94 296.44 0.15 -64.79 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.35 Total: 23.25 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.42 Total: -21.78 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.77 Total: -79.22 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.87 Total: -33.01 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.94 0.15 -64.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.290 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds