Wall clock time and date at job start Sun Mar 29 2020 22:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.57934 * 2 1 4 4 C 1.53124 * 109.51976 * 120.15264 * 2 1 3 5 5 C 1.53044 * 109.27485 * 62.25448 * 4 2 1 6 6 N 1.46842 * 109.52424 * 59.17499 * 5 4 2 7 7 C 1.46901 * 110.99624 * 174.15880 * 6 5 4 8 8 C 1.52995 * 109.47336 * 294.21092 * 7 6 5 9 9 H 1.08999 * 109.47379 * 60.00533 * 8 7 6 10 10 O 1.42898 * 109.47308 * 300.00102 * 8 7 6 11 11 C 1.50703 * 109.47045 * 179.97438 * 8 7 6 12 12 H 1.07999 * 120.00298 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00074 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99560 * 0.02562 * 13 11 8 15 15 Si 1.86791 * 120.00025 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47847 * 59.99873 * 15 13 11 17 17 H 1.48503 * 109.47378 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47298 * 299.99642 * 15 13 11 19 19 C 1.46842 * 111.20101 * 298.25581 * 6 5 4 20 20 C 1.53043 * 109.51973 * 61.74681 * 19 6 5 21 21 H 1.08993 * 109.50757 * 60.79932 * 20 19 6 22 22 C 1.53006 * 109.50009 * 180.87957 * 20 19 6 23 23 H 1.08995 * 109.47559 * 180.16015 * 1 2 3 24 24 H 1.09001 * 109.47176 * 300.16469 * 1 2 3 25 25 H 1.09001 * 109.46516 * 60.15839 * 1 2 3 26 26 H 1.08991 * 109.50857 * 302.31007 * 4 2 1 27 27 H 1.09001 * 109.50457 * 182.18799 * 4 2 1 28 28 H 1.08999 * 109.45900 * 299.15732 * 5 4 2 29 29 H 1.09001 * 109.46076 * 179.19832 * 5 4 2 30 30 H 1.09002 * 109.47204 * 54.21676 * 7 6 5 31 31 H 1.09004 * 109.46883 * 174.20858 * 7 6 5 32 32 H 0.96696 * 113.99909 * 299.99835 * 10 8 7 33 33 H 0.97008 * 119.99769 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.46494 * 301.73071 * 19 6 5 35 35 H 1.09001 * 109.46134 * 181.75823 * 19 6 5 36 36 H 1.09001 * 109.46801 * 59.99828 * 22 20 19 37 37 H 1.09001 * 109.46998 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.47050 * 299.99716 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 1.2479 5 6 1.5765 -2.1826 1.2118 6 7 2.0924 -2.8324 0.0002 7 6 1.7822 -4.2683 0.0003 8 6 2.5405 -4.9537 1.1387 9 1 2.2392 -4.5170 2.0908 10 8 3.9455 -4.7699 0.9537 11 6 2.2218 -6.4267 1.1391 12 1 1.5464 -6.8333 0.4010 13 6 2.7935 -7.2555 2.0812 14 7 3.6164 -6.7604 2.9797 15 14 2.3990 -9.0812 2.0813 16 1 2.8089 -9.6765 0.7841 17 1 3.1349 -9.7467 3.1863 18 1 0.9390 -9.2723 2.2742 19 6 1.5766 -2.1827 -1.2115 20 6 2.0418 -0.7251 -1.2477 21 1 3.1310 -0.6911 -1.2680 22 6 1.4860 -0.0426 -2.4992 23 1 -0.3634 -1.0276 0.0029 24 1 -0.3633 0.5164 0.8885 25 1 -0.3632 0.5114 -0.8914 26 1 1.6457 -0.2386 2.1394 27 1 3.1309 -0.6910 1.2676 28 1 0.4871 -2.2160 1.2061 29 1 1.9511 -2.7052 2.0919 30 1 0.7105 -4.4085 0.1414 31 1 2.0835 -4.7051 -0.9518 32 1 4.2841 -5.1351 0.1248 33 1 4.0189 -7.3435 3.6423 34 1 0.4872 -2.2162 -1.2058 35 1 1.9513 -2.7055 -2.0914 36 1 0.3967 -0.0756 -2.4776 37 1 1.8172 0.9956 -2.5243 38 1 1.8477 -0.5613 -3.3870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930143805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:27 Heat of formation + Delta-G solvation = -65.373686 kcal Electronic energy + Delta-G solvation = -16767.340956 eV Core-core repulsion = 14222.936934 eV Total energy + Delta-G solvation = -2544.404022 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37993 -36.01594 -33.70371 -32.02867 -31.91523 -28.67755 -27.57792 -25.90183 -24.61579 -22.39240 -21.91732 -19.81174 -18.07582 -16.96704 -15.58368 -15.01723 -14.63243 -14.51933 -14.35881 -14.10681 -13.56161 -13.17812 -12.97122 -12.53550 -12.43830 -11.91146 -11.66662 -11.43588 -11.33752 -11.13209 -10.87839 -10.78295 -10.70546 -10.58376 -10.21112 -10.12111 -9.90317 -9.81940 -8.89477 -8.51881 -8.02529 -7.49156 -5.96567 -4.14856 3.30797 3.36090 3.37721 4.35765 4.54400 4.85773 4.98168 5.06291 5.30926 5.32713 5.54933 5.58580 5.65890 5.69789 5.78814 5.85026 5.89961 5.97473 6.00983 6.09569 6.16976 6.21612 6.27012 6.38320 6.44075 6.50921 6.56057 6.66494 6.72594 6.88311 7.66158 7.75437 7.84113 7.95598 8.25577 8.89158 9.51038 9.67955 11.07528 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050503 B = 0.006131 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.288632 B = 4565.950117 C = 4685.211345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.111 4.111 5 C 0.056 3.944 6 N -0.526 5.526 7 C 0.032 3.968 8 C 0.237 3.763 9 H 0.054 0.946 10 O -0.553 6.553 11 C -0.575 4.575 12 H 0.053 0.947 13 C 0.080 3.920 14 N -0.859 5.859 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.059 3.941 20 C -0.084 4.084 21 H 0.077 0.923 22 C -0.147 4.147 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.342 0.658 33 H 0.260 0.740 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 12.010 -7.095 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.072 4.072 6 N -0.250 5.250 7 C -0.096 4.096 8 C 0.179 3.821 9 H 0.072 0.928 10 O -0.355 6.355 11 C -0.613 4.613 12 H 0.071 0.929 13 C -0.126 4.126 14 N -0.495 5.495 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.069 4.069 20 C -0.103 4.103 21 H 0.095 0.905 22 C -0.205 4.205 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.185 0.815 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.302 12.321 -6.329 14.504 hybrid contribution -1.185 -1.501 -0.522 1.982 sum -5.487 10.820 -6.851 13.932 Atomic orbital electron populations 1.21988 0.95932 1.01969 1.01024 1.21154 0.95363 0.98697 0.95300 0.91759 1.21608 1.01613 0.95079 0.96547 1.22092 0.96282 0.94321 0.94543 1.61895 1.59115 1.03241 1.00746 1.23053 0.98223 0.86039 1.02264 1.19308 0.78829 0.92344 0.91589 0.92848 1.86554 1.24888 1.81782 1.42274 1.21642 1.29723 0.93961 1.16014 0.92870 1.25018 0.94261 0.98469 0.94859 1.70076 1.28154 1.35180 1.16051 0.86744 0.78450 0.85498 0.77694 1.20157 1.21190 1.20258 1.22126 0.96632 0.94151 0.93975 1.21154 1.00857 0.94344 0.93907 0.90491 1.21862 1.01019 1.00064 0.97512 0.92371 0.93134 0.92813 0.92173 0.91089 0.95765 0.89929 0.95866 0.92031 0.81524 0.92972 0.95662 0.91614 0.92676 0.92883 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.20 37.16 0.30 -1.47 16 2 C -0.09 -1.09 2.77 -90.50 -0.25 -1.34 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.62 5.60 -26.64 -0.15 -1.77 16 5 C 0.06 0.98 5.04 -3.83 -0.02 0.97 16 6 N -0.53 -9.84 4.52 -234.67 -1.06 -10.90 16 7 C 0.03 0.67 4.56 -3.83 -0.02 0.66 16 8 C 0.24 6.12 2.70 -27.88 -0.08 6.04 16 9 H 0.05 1.51 6.43 -51.93 -0.33 1.18 16 10 O -0.55 -14.71 12.60 -35.23 -0.44 -15.15 16 11 C -0.57 -16.00 8.76 -34.44 -0.30 -16.30 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 14 N -0.86 -25.71 12.84 55.43 0.71 -25.00 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.06 0.92 4.50 -3.83 -0.02 0.90 16 20 C -0.08 -1.10 2.66 -90.53 -0.24 -1.34 16 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.15 -1.56 8.79 37.16 0.33 -1.23 16 23 H 0.06 0.76 4.92 -51.93 -0.26 0.51 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.56 6.39 -51.93 -0.33 0.23 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.02 0.42 6.51 -51.93 -0.34 0.08 16 29 H 0.08 1.68 6.21 -51.93 -0.32 1.36 16 30 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 32 H 0.34 8.21 9.04 45.56 0.41 8.62 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.03 0.39 6.51 -51.93 -0.34 0.05 16 35 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 36 H 0.05 0.56 6.38 -51.93 -0.33 0.23 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -29.97 289.37 -7.58 -37.55 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.59 Total: 5.55 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.54 Total: -12.73 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.35 Total: -35.90 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.44 Total: -15.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.97 -7.58 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.824 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds