Wall clock time and date at job start Sun Mar 29 2020 22:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.57934 * 2 1 4 4 C 1.53124 * 109.51976 * 120.15264 * 2 1 3 5 5 C 1.53044 * 109.27485 * 62.25448 * 4 2 1 6 6 N 1.46842 * 109.52424 * 59.17499 * 5 4 2 7 7 C 1.46901 * 110.99624 * 174.15880 * 6 5 4 8 8 C 1.52995 * 109.47336 * 294.21092 * 7 6 5 9 9 H 1.08999 * 109.47379 * 60.00533 * 8 7 6 10 10 O 1.42898 * 109.47308 * 300.00102 * 8 7 6 11 11 C 1.50703 * 109.47045 * 179.97438 * 8 7 6 12 12 H 1.07999 * 120.00298 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00074 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99560 * 0.02562 * 13 11 8 15 15 Si 1.86791 * 120.00025 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47847 * 59.99873 * 15 13 11 17 17 H 1.48503 * 109.47378 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47298 * 299.99642 * 15 13 11 19 19 C 1.46842 * 111.20101 * 298.25581 * 6 5 4 20 20 C 1.53043 * 109.51973 * 61.74681 * 19 6 5 21 21 H 1.08993 * 109.50757 * 60.79932 * 20 19 6 22 22 C 1.53006 * 109.50009 * 180.87957 * 20 19 6 23 23 H 1.08995 * 109.47559 * 180.16015 * 1 2 3 24 24 H 1.09001 * 109.47176 * 300.16469 * 1 2 3 25 25 H 1.09001 * 109.46516 * 60.15839 * 1 2 3 26 26 H 1.08991 * 109.50857 * 302.31007 * 4 2 1 27 27 H 1.09001 * 109.50457 * 182.18799 * 4 2 1 28 28 H 1.08999 * 109.45900 * 299.15732 * 5 4 2 29 29 H 1.09001 * 109.46076 * 179.19832 * 5 4 2 30 30 H 1.09002 * 109.47204 * 54.21676 * 7 6 5 31 31 H 1.09004 * 109.46883 * 174.20858 * 7 6 5 32 32 H 0.96696 * 113.99909 * 299.99835 * 10 8 7 33 33 H 0.97008 * 119.99769 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.46494 * 301.73071 * 19 6 5 35 35 H 1.09001 * 109.46134 * 181.75823 * 19 6 5 36 36 H 1.09001 * 109.46801 * 59.99828 * 22 20 19 37 37 H 1.09001 * 109.46998 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.47050 * 299.99716 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 1.2479 5 6 1.5765 -2.1826 1.2118 6 7 2.0924 -2.8324 0.0002 7 6 1.7822 -4.2683 0.0003 8 6 2.5405 -4.9537 1.1387 9 1 2.2392 -4.5170 2.0908 10 8 3.9455 -4.7699 0.9537 11 6 2.2218 -6.4267 1.1391 12 1 1.5464 -6.8333 0.4010 13 6 2.7935 -7.2555 2.0812 14 7 3.6164 -6.7604 2.9797 15 14 2.3990 -9.0812 2.0813 16 1 2.8089 -9.6765 0.7841 17 1 3.1349 -9.7467 3.1863 18 1 0.9390 -9.2723 2.2742 19 6 1.5766 -2.1827 -1.2115 20 6 2.0418 -0.7251 -1.2477 21 1 3.1310 -0.6911 -1.2680 22 6 1.4860 -0.0426 -2.4992 23 1 -0.3634 -1.0276 0.0029 24 1 -0.3633 0.5164 0.8885 25 1 -0.3632 0.5114 -0.8914 26 1 1.6457 -0.2386 2.1394 27 1 3.1309 -0.6910 1.2676 28 1 0.4871 -2.2160 1.2061 29 1 1.9511 -2.7052 2.0919 30 1 0.7105 -4.4085 0.1414 31 1 2.0835 -4.7051 -0.9518 32 1 4.2841 -5.1351 0.1248 33 1 4.0189 -7.3435 3.6423 34 1 0.4872 -2.2162 -1.2058 35 1 1.9513 -2.7055 -2.0914 36 1 0.3967 -0.0756 -2.4776 37 1 1.8172 0.9956 -2.5243 38 1 1.8477 -0.5613 -3.3870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930143805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:27 Heat of formation + Delta-G solvation = -86.818307 kcal Electronic energy + Delta-G solvation = -16768.270865 eV Core-core repulsion = 14222.936934 eV Total energy + Delta-G solvation = -2545.333931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65106 -37.85509 -35.26544 -34.20587 -33.06011 -30.42265 -28.80966 -27.31308 -26.16985 -23.94330 -23.23033 -21.52814 -19.22509 -19.03545 -16.87768 -16.67937 -16.47966 -16.13464 -15.88367 -15.45616 -15.09700 -14.70694 -14.43110 -14.09477 -13.50274 -13.19345 -12.92046 -12.89470 -12.84472 -12.73876 -12.58051 -12.38556 -12.22353 -11.99930 -11.84233 -11.36920 -11.23173 -10.99728 -10.85643 -10.66412 -10.06407 -9.01032 -8.13145 -6.39756 1.40070 1.42115 1.50359 2.38324 3.07216 3.13315 3.80012 3.87804 3.97754 4.19886 4.32362 4.34243 4.45786 4.49606 4.54332 4.63972 4.71846 4.72697 4.80894 4.88792 4.91035 4.97267 5.05333 5.12821 5.16976 5.27110 5.31259 5.41912 5.45867 5.59903 5.63896 5.76012 6.03945 6.26284 6.39864 6.74016 7.34533 7.62599 8.91263 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.050503 B = 0.006131 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.288632 B = 4565.950117 C = 4685.211345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.086 0.914 4 C -0.106 4.106 5 C 0.057 3.943 6 N -0.538 5.538 7 C 0.049 3.951 8 C 0.238 3.762 9 H 0.019 0.981 10 O -0.569 6.569 11 C -0.591 4.591 12 H 0.058 0.942 13 C 0.026 3.974 14 N -0.900 5.900 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.059 3.941 20 C -0.081 4.081 21 H 0.064 0.936 22 C -0.140 4.140 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.351 0.649 33 H 0.261 0.739 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 12.754 -8.541 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.104 0.896 4 C -0.144 4.144 5 C -0.071 4.071 6 N -0.262 5.262 7 C -0.079 4.079 8 C 0.180 3.820 9 H 0.037 0.963 10 O -0.372 6.372 11 C -0.629 4.629 12 H 0.076 0.924 13 C -0.177 4.177 14 N -0.537 5.537 15 Si 0.786 3.214 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.069 4.069 20 C -0.100 4.100 21 H 0.083 0.917 22 C -0.198 4.198 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.286 13.077 -7.797 16.117 hybrid contribution -0.866 -1.692 -0.060 1.902 sum -6.152 11.385 -7.857 15.139 Atomic orbital electron populations 1.21952 0.94898 1.01187 1.02473 1.21161 0.96136 0.99254 0.93559 0.89618 1.21586 1.00781 0.93225 0.98810 1.22044 0.96401 0.95847 0.92779 1.61844 1.59935 1.02007 1.02444 1.22658 0.97061 0.87799 1.00388 1.19159 0.78947 0.92016 0.91856 0.96348 1.86499 1.25587 1.81979 1.43151 1.22041 1.29641 0.95169 1.16088 0.92372 1.25914 0.93942 1.03514 0.94295 1.70226 1.29508 1.37023 1.16943 0.85587 0.78488 0.79330 0.78007 1.19087 1.20909 1.19377 1.22233 0.96922 0.95549 0.92165 1.21142 1.00239 0.92899 0.95695 0.91709 1.21807 1.01326 1.00668 0.95966 0.94177 0.92222 0.90918 0.90613 0.92515 0.95267 0.93757 0.96225 0.91430 0.80452 0.92968 0.95116 0.91468 0.91959 0.91251 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.20 71.98 0.59 -2.46 16 2 C -0.08 -1.89 2.77 -10.71 -0.03 -1.92 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -3.05 5.60 30.65 0.17 -2.88 16 5 C 0.06 2.07 5.04 86.33 0.44 2.51 16 6 N -0.54 -20.28 4.52 -896.37 -4.05 -24.34 16 7 C 0.05 2.12 4.56 86.30 0.39 2.51 16 8 C 0.24 12.69 2.70 29.85 0.08 12.77 16 9 H 0.02 1.12 6.43 -2.39 -0.02 1.10 16 10 O -0.57 -31.18 12.60 -148.98 -1.88 -33.06 16 11 C -0.59 -33.35 8.76 25.60 0.22 -33.13 16 12 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 13 C 0.03 1.47 5.40 84.66 0.46 1.93 16 14 N -0.90 -55.10 12.84 21.45 0.28 -54.82 16 15 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.06 1.75 4.50 86.33 0.39 2.14 16 20 C -0.08 -1.95 2.66 -10.74 -0.03 -1.98 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 C -0.14 -2.51 8.79 71.98 0.63 -1.88 16 23 H 0.04 0.97 4.92 -2.39 -0.01 0.96 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.23 6.39 -2.39 -0.02 1.22 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.03 1.02 6.51 -2.39 -0.02 1.00 16 29 H 0.04 1.92 6.21 -2.39 -0.01 1.91 16 30 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 2.80 7.99 -2.38 -0.02 2.78 16 32 H 0.35 17.26 9.04 -74.06 -0.67 16.59 16 33 H 0.26 15.13 8.31 -92.70 -0.77 14.35 16 34 H 0.03 0.89 6.51 -2.39 -0.02 0.88 16 35 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 36 H 0.06 1.04 6.38 -2.39 -0.02 1.03 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -64.97 289.37 0.05 -64.93 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.36 Total: 23.70 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.32 Total: -22.39 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.78 Total: -79.16 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.88 Total: -33.06 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.97 0.05 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.891 kcal (2) G-P(sol) polarization free energy of solvation -64.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds