Wall clock time and date at job start Sun Mar 29 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.52418 * 2 1 4 4 C 1.53124 * 109.57533 * 239.84434 * 2 1 3 5 5 C 1.53039 * 109.27791 * 297.71811 * 4 2 1 6 6 N 1.46849 * 109.52152 * 300.82125 * 5 4 2 7 7 C 1.46897 * 110.99811 * 185.83772 * 6 5 4 8 8 C 1.53006 * 109.47145 * 164.06336 * 7 6 5 9 9 H 1.08996 * 109.47240 * 58.36357 * 8 7 6 10 10 O 1.42906 * 109.46699 * 298.36526 * 8 7 6 11 11 C 1.50699 * 109.47063 * 178.36868 * 8 7 6 12 12 H 1.07993 * 120.00220 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99643 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00284 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99999 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46967 * 60.00475 * 15 13 11 17 17 H 1.48499 * 109.47205 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47436 * 300.00689 * 15 13 11 19 19 C 1.46930 * 111.22318 * 61.74220 * 6 5 4 20 20 C 1.53039 * 109.47947 * 298.28689 * 19 6 5 21 21 H 1.09001 * 109.50141 * 299.19528 * 20 19 6 22 22 C 1.52994 * 109.50272 * 179.11784 * 20 19 6 23 23 H 1.09003 * 109.47462 * 299.87518 * 1 2 3 24 24 H 1.09002 * 109.47539 * 59.87287 * 1 2 3 25 25 H 1.08999 * 109.47215 * 179.87251 * 1 2 3 26 26 H 1.09000 * 109.50364 * 57.65489 * 4 2 1 27 27 H 1.08997 * 109.50324 * 177.77791 * 4 2 1 28 28 H 1.08999 * 109.46066 * 60.83386 * 5 4 2 29 29 H 1.08997 * 109.46499 * 180.80206 * 5 4 2 30 30 H 1.08994 * 109.47204 * 284.06110 * 7 6 5 31 31 H 1.09003 * 109.47327 * 44.06266 * 7 6 5 32 32 H 0.96694 * 114.00080 * 299.99767 * 10 8 7 33 33 H 0.97003 * 120.00007 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.51680 * 178.26079 * 19 6 5 35 35 H 1.09007 * 109.44793 * 58.26076 * 19 6 5 36 36 H 1.08997 * 109.47658 * 300.07218 * 22 20 19 37 37 H 1.09007 * 109.47178 * 60.07911 * 22 20 19 38 38 H 1.09000 * 109.47047 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0430 -0.7248 -1.2475 5 6 1.5792 -2.1827 -1.2114 6 7 2.0950 -2.8319 0.0007 7 6 1.7861 -4.2680 0.0007 8 6 2.6550 -4.9765 1.0419 9 1 2.4725 -4.5413 2.0244 10 8 4.0334 -4.8180 0.6994 11 6 2.3099 -6.4432 1.0701 12 1 1.5469 -6.8311 0.4117 13 6 2.9683 -7.2897 1.9366 14 7 3.8972 -6.8173 2.7388 15 14 2.5401 -9.1076 1.9721 16 1 2.7879 -9.7008 0.6334 17 1 3.3835 -9.7952 2.9825 18 1 1.1079 -9.2720 2.3288 19 6 1.5779 -2.1824 1.2130 20 6 2.0416 -0.7244 1.2482 21 1 3.1309 -0.6893 1.2684 22 6 1.4853 -0.0415 2.4991 23 1 -0.3634 0.5119 0.8911 24 1 -0.3634 0.5158 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 1.6470 -0.2390 -2.1393 27 1 3.1322 -0.6898 -1.2665 28 1 0.4897 -2.2172 -1.2062 29 1 1.9548 -2.7053 -2.0911 30 1 0.7341 -4.4134 0.2459 31 1 1.9900 -4.6836 -0.9861 32 1 4.2684 -5.1832 -0.1645 33 1 4.3601 -7.4128 3.3486 34 1 1.9527 -2.7041 2.0936 35 1 0.4884 -2.2169 1.2067 36 1 0.3961 -0.0767 2.4785 37 1 1.8488 -0.5584 3.3873 38 1 1.8155 0.9970 2.5234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930143807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:28 Heat of formation + Delta-G solvation = -65.769048 kcal Electronic energy + Delta-G solvation = -16802.314012 eV Core-core repulsion = 14257.892845 eV Total energy + Delta-G solvation = -2544.421167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36376 -35.96106 -33.75616 -32.02857 -31.89389 -28.72851 -27.31353 -26.09385 -24.62359 -22.64842 -21.37096 -20.07116 -18.05911 -16.93506 -15.56368 -15.08354 -14.63662 -14.53441 -14.37453 -14.00388 -13.40539 -13.20890 -13.07627 -12.46901 -12.33478 -11.88815 -11.67296 -11.61198 -11.20529 -11.11153 -10.87545 -10.80383 -10.74573 -10.55430 -10.17876 -10.08503 -9.91902 -9.79859 -8.91989 -8.51971 -8.04136 -7.46960 -5.95969 -4.14436 3.30894 3.36208 3.37800 4.35838 4.54474 4.90491 4.96246 5.08576 5.31321 5.35752 5.57336 5.61686 5.62933 5.68058 5.82587 5.86975 5.90095 6.01044 6.07036 6.13801 6.17406 6.17898 6.24680 6.41386 6.44245 6.46743 6.58332 6.68210 6.73646 6.88596 7.65995 7.74355 7.84135 7.97122 8.26247 8.89778 9.51636 9.68761 11.08044 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.006457 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.132121 B = 4335.469152 C = 4515.645083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.110 4.110 5 C 0.054 3.946 6 N -0.526 5.526 7 C 0.032 3.968 8 C 0.239 3.761 9 H 0.053 0.947 10 O -0.554 6.554 11 C -0.575 4.575 12 H 0.053 0.947 13 C 0.080 3.920 14 N -0.859 5.859 15 Si 0.888 3.112 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.063 3.937 20 C -0.084 4.084 21 H 0.078 0.922 22 C -0.147 4.147 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.341 0.659 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 12.138 -5.039 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.075 4.075 6 N -0.250 5.250 7 C -0.096 4.096 8 C 0.181 3.819 9 H 0.071 0.929 10 O -0.355 6.355 11 C -0.614 4.614 12 H 0.071 0.929 13 C -0.126 4.126 14 N -0.494 5.494 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.065 4.065 20 C -0.103 4.103 21 H 0.096 0.904 22 C -0.205 4.205 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.184 0.816 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.842 12.443 -4.293 14.026 hybrid contribution -1.265 -1.495 -0.512 2.024 sum -6.107 10.948 -4.806 13.426 Atomic orbital electron populations 1.21986 0.95937 1.01944 1.01035 1.21151 0.95355 0.98715 0.95297 0.91745 1.21595 1.01472 0.94947 0.96765 1.22090 0.96620 0.94718 0.94033 1.61926 1.59112 1.03263 1.00725 1.23070 0.98588 0.86021 1.01915 1.19280 0.78625 0.92141 0.91832 0.92914 1.86563 1.28287 1.82386 1.38262 1.21645 1.22616 0.94183 1.22931 0.92885 1.25018 0.94379 0.98483 0.94722 1.70076 1.22720 1.35052 1.21572 0.86753 0.78370 0.85450 0.77860 1.20160 1.21187 1.20260 1.22140 0.96241 0.93806 0.94326 1.21158 1.01023 0.94400 0.93710 0.90368 1.21853 1.00899 0.99943 0.97805 0.92627 0.93312 0.92400 0.92341 0.91187 0.95725 0.91531 0.95720 0.92115 0.81620 0.92977 0.90213 0.95704 0.92731 0.92508 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.20 37.15 0.30 -1.46 16 2 C -0.09 -1.09 2.77 -90.50 -0.25 -1.34 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.45 5.60 -26.65 -0.15 -1.60 16 5 C 0.05 0.83 5.20 -3.83 -0.02 0.81 16 6 N -0.53 -9.85 4.51 -234.59 -1.06 -10.90 16 7 C 0.03 0.67 4.57 -3.82 -0.02 0.65 16 8 C 0.24 6.19 2.84 -27.88 -0.08 6.11 16 9 H 0.05 1.50 6.59 -51.93 -0.34 1.16 16 10 O -0.55 -14.77 12.62 -35.23 -0.44 -15.21 16 11 C -0.58 -16.03 8.76 -34.44 -0.30 -16.33 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 14 N -0.86 -25.75 12.84 55.43 0.71 -25.04 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.06 1.10 4.34 -3.79 -0.02 1.08 16 20 C -0.08 -1.22 2.66 -90.54 -0.24 -1.46 16 21 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 22 C -0.15 -1.82 8.79 37.15 0.33 -1.50 16 23 H 0.05 0.60 6.39 -51.93 -0.33 0.26 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.75 4.93 -51.93 -0.26 0.50 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.02 0.37 6.51 -51.93 -0.34 0.04 16 29 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 30 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.06 1.26 7.87 -51.93 -0.41 0.85 16 32 H 0.34 8.19 9.04 45.56 0.41 8.61 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.60 6.47 -51.93 -0.34 1.26 16 35 H 0.02 0.42 6.52 -51.92 -0.34 0.08 16 36 H 0.05 0.64 6.39 -51.93 -0.33 0.31 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 289.73 15.07 4.37 4.37 Total: -1.00 -30.11 289.73 -7.59 -37.70 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.60 Total: 5.60 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.54 Total: -12.86 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.35 Total: -35.94 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.44 Total: -15.21 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.11 -7.59 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.068 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds