Wall clock time and date at job start Sun Mar 29 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.52418 * 2 1 4 4 C 1.53124 * 109.57533 * 239.84434 * 2 1 3 5 5 C 1.53039 * 109.27791 * 297.71811 * 4 2 1 6 6 N 1.46849 * 109.52152 * 300.82125 * 5 4 2 7 7 C 1.46897 * 110.99811 * 185.83772 * 6 5 4 8 8 C 1.53006 * 109.47145 * 164.06336 * 7 6 5 9 9 H 1.08996 * 109.47240 * 58.36357 * 8 7 6 10 10 O 1.42906 * 109.46699 * 298.36526 * 8 7 6 11 11 C 1.50699 * 109.47063 * 178.36868 * 8 7 6 12 12 H 1.07993 * 120.00220 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99643 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00284 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99999 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46967 * 60.00475 * 15 13 11 17 17 H 1.48499 * 109.47205 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47436 * 300.00689 * 15 13 11 19 19 C 1.46930 * 111.22318 * 61.74220 * 6 5 4 20 20 C 1.53039 * 109.47947 * 298.28689 * 19 6 5 21 21 H 1.09001 * 109.50141 * 299.19528 * 20 19 6 22 22 C 1.52994 * 109.50272 * 179.11784 * 20 19 6 23 23 H 1.09003 * 109.47462 * 299.87518 * 1 2 3 24 24 H 1.09002 * 109.47539 * 59.87287 * 1 2 3 25 25 H 1.08999 * 109.47215 * 179.87251 * 1 2 3 26 26 H 1.09000 * 109.50364 * 57.65489 * 4 2 1 27 27 H 1.08997 * 109.50324 * 177.77791 * 4 2 1 28 28 H 1.08999 * 109.46066 * 60.83386 * 5 4 2 29 29 H 1.08997 * 109.46499 * 180.80206 * 5 4 2 30 30 H 1.08994 * 109.47204 * 284.06110 * 7 6 5 31 31 H 1.09003 * 109.47327 * 44.06266 * 7 6 5 32 32 H 0.96694 * 114.00080 * 299.99767 * 10 8 7 33 33 H 0.97003 * 120.00007 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.51680 * 178.26079 * 19 6 5 35 35 H 1.09007 * 109.44793 * 58.26076 * 19 6 5 36 36 H 1.08997 * 109.47658 * 300.07218 * 22 20 19 37 37 H 1.09007 * 109.47178 * 60.07911 * 22 20 19 38 38 H 1.09000 * 109.47047 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0430 -0.7248 -1.2475 5 6 1.5792 -2.1827 -1.2114 6 7 2.0950 -2.8319 0.0007 7 6 1.7861 -4.2680 0.0007 8 6 2.6550 -4.9765 1.0419 9 1 2.4725 -4.5413 2.0244 10 8 4.0334 -4.8180 0.6994 11 6 2.3099 -6.4432 1.0701 12 1 1.5469 -6.8311 0.4117 13 6 2.9683 -7.2897 1.9366 14 7 3.8972 -6.8173 2.7388 15 14 2.5401 -9.1076 1.9721 16 1 2.7879 -9.7008 0.6334 17 1 3.3835 -9.7952 2.9825 18 1 1.1079 -9.2720 2.3288 19 6 1.5779 -2.1824 1.2130 20 6 2.0416 -0.7244 1.2482 21 1 3.1309 -0.6893 1.2684 22 6 1.4853 -0.0415 2.4991 23 1 -0.3634 0.5119 0.8911 24 1 -0.3634 0.5158 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 1.6470 -0.2390 -2.1393 27 1 3.1322 -0.6898 -1.2665 28 1 0.4897 -2.2172 -1.2062 29 1 1.9548 -2.7053 -2.0911 30 1 0.7341 -4.4134 0.2459 31 1 1.9900 -4.6836 -0.9861 32 1 4.2684 -5.1832 -0.1645 33 1 4.3601 -7.4128 3.3486 34 1 1.9527 -2.7041 2.0936 35 1 0.4884 -2.2169 1.2067 36 1 0.3961 -0.0767 2.4785 37 1 1.8488 -0.5584 3.3873 38 1 1.8155 0.9970 2.5234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930143807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:28 Heat of formation + Delta-G solvation = -87.385937 kcal Electronic energy + Delta-G solvation = -16803.251390 eV Core-core repulsion = 14257.892845 eV Total energy + Delta-G solvation = -2545.358545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.63808 -37.82389 -35.30022 -34.20882 -33.07565 -30.40817 -28.63510 -27.47015 -26.25623 -24.14084 -22.61421 -21.90745 -19.22413 -19.01093 -16.86827 -16.66404 -16.54344 -16.20897 -15.77426 -15.39053 -15.05094 -14.88147 -14.36107 -13.97733 -13.52144 -13.17893 -13.04549 -12.93045 -12.84577 -12.77597 -12.63806 -12.30989 -12.17918 -11.98579 -11.85970 -11.33742 -11.17167 -11.08828 -10.85434 -10.67837 -10.07797 -8.99093 -8.12970 -6.39863 1.39779 1.41930 1.50187 2.38166 3.07405 3.13200 3.79987 3.88224 3.97205 4.19787 4.32886 4.34841 4.44732 4.49077 4.58009 4.60442 4.69837 4.74728 4.82146 4.85442 4.89562 5.00632 5.03692 5.13892 5.14704 5.25409 5.32406 5.41871 5.45146 5.59195 5.63433 5.76026 6.04057 6.27096 6.40287 6.74270 7.34564 7.63208 8.91372 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.006457 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.132121 B = 4335.469152 C = 4515.645083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.086 0.914 4 C -0.106 4.106 5 C 0.052 3.948 6 N -0.540 5.540 7 C 0.049 3.951 8 C 0.240 3.760 9 H 0.016 0.984 10 O -0.570 6.570 11 C -0.591 4.591 12 H 0.058 0.942 13 C 0.025 3.975 14 N -0.900 5.900 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.065 3.935 20 C -0.081 4.081 21 H 0.058 0.942 22 C -0.143 4.143 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.068 0.932 32 H 0.351 0.649 33 H 0.261 0.739 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 12.964 -6.337 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.104 0.896 4 C -0.144 4.144 5 C -0.076 4.076 6 N -0.265 5.265 7 C -0.079 4.079 8 C 0.182 3.818 9 H 0.034 0.966 10 O -0.373 6.373 11 C -0.630 4.630 12 H 0.077 0.923 13 C -0.177 4.177 14 N -0.537 5.537 15 Si 0.786 3.214 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.062 4.062 20 C -0.100 4.100 21 H 0.077 0.923 22 C -0.200 4.200 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.010 13.281 -5.610 15.620 hybrid contribution -0.888 -1.711 -0.110 1.931 sum -6.898 11.570 -5.720 14.634 Atomic orbital electron populations 1.21949 0.94834 1.01201 1.02514 1.21157 0.96176 0.99274 0.93505 0.89588 1.21600 1.00971 0.93418 0.98380 1.22200 0.97057 0.96064 0.92246 1.61864 1.60040 1.02035 1.02530 1.22665 0.97066 0.87767 1.00410 1.19125 0.79066 0.91908 0.91677 0.96649 1.86506 1.29025 1.82599 1.39160 1.22045 1.22612 0.95358 1.22940 0.92338 1.25923 0.94108 1.03530 0.94152 1.70228 1.24084 1.36872 1.22514 0.85590 0.78322 0.79284 0.78229 1.19044 1.20907 1.19376 1.22102 0.96326 0.95372 0.92446 1.21131 0.99933 0.92701 0.96234 0.92330 1.21824 1.01401 1.00730 0.96091 0.91631 0.91434 0.94168 0.89475 0.92190 0.94985 0.91264 0.96110 0.91375 0.80480 0.92976 0.94118 0.95174 0.91743 0.93809 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.20 71.98 0.59 -2.38 16 2 C -0.08 -1.86 2.77 -10.72 -0.03 -1.89 16 3 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.11 -2.53 5.60 30.65 0.17 -2.36 16 5 C 0.05 1.53 5.20 86.33 0.45 1.97 16 6 N -0.54 -20.37 4.51 -896.12 -4.04 -24.41 16 7 C 0.05 2.12 4.57 86.31 0.39 2.51 16 8 C 0.24 12.86 2.84 29.85 0.08 12.95 16 9 H 0.02 0.95 6.59 -2.39 -0.02 0.93 16 10 O -0.57 -31.37 12.62 -148.98 -1.88 -33.25 16 11 C -0.59 -33.45 8.76 25.60 0.22 -33.22 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.03 1.45 5.40 84.65 0.46 1.90 16 14 N -0.90 -55.29 12.84 21.45 0.28 -55.01 16 15 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.07 2.35 4.34 86.31 0.37 2.72 16 20 C -0.08 -2.30 2.66 -10.74 -0.03 -2.33 16 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 22 C -0.14 -3.37 8.79 71.98 0.63 -2.74 16 23 H 0.06 1.19 6.39 -2.39 -0.02 1.17 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 0.95 4.93 -2.39 -0.01 0.94 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.03 0.91 6.51 -2.39 -0.02 0.89 16 29 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 30 H 0.02 0.90 8.06 -2.39 -0.02 0.88 16 31 H 0.07 2.80 7.87 -2.39 -0.02 2.78 16 32 H 0.35 17.25 9.04 -74.06 -0.67 16.58 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.04 1.75 6.47 -2.39 -0.02 1.73 16 35 H 0.03 1.04 6.52 -2.38 -0.02 1.02 16 36 H 0.06 1.39 6.39 -2.39 -0.02 1.37 16 37 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.63 289.73 0.06 -65.57 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.36 Total: 23.91 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 3.32 Total: -22.86 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -3.77 Total: -79.42 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.88 Total: -33.25 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.63 0.06 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930143807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.816 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds