Wall clock time and date at job start Sun Mar 29 2020 21:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.09005 * 110.42131 * 60.05411 * 3 2 1 5 5 C 1.54903 * 110.37466 * 182.36312 * 3 2 1 6 6 C 1.55139 * 101.65278 * 155.90056 * 5 3 2 7 7 C 1.54318 * 103.01918 * 324.34671 * 6 5 3 8 8 H 1.08999 * 109.89104 * 262.88080 * 7 6 5 9 9 C 1.53007 * 110.02477 * 141.76627 * 7 6 5 10 10 N 1.47438 * 107.23269 * 22.28592 * 7 6 5 11 11 C 1.46901 * 111.00238 * 123.25746 * 10 7 6 12 12 C 1.53001 * 109.47400 * 95.69932 * 11 10 7 13 13 H 1.09008 * 109.46871 * 50.56938 * 12 11 10 14 14 O 1.42900 * 109.46875 * 290.57552 * 12 11 10 15 15 C 1.50693 * 109.47419 * 170.57409 * 12 11 10 16 16 H 1.08007 * 119.99991 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00248 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99891 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00169 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47065 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46882 * 119.99302 * 19 17 15 22 22 H 1.48494 * 109.47219 * 239.99127 * 19 17 15 23 23 H 1.09000 * 109.47197 * 184.50671 * 1 2 3 24 24 H 1.09003 * 109.47630 * 304.50937 * 1 2 3 25 25 H 1.09000 * 109.47129 * 64.50700 * 1 2 3 26 26 H 1.08994 * 109.47298 * 239.99844 * 2 1 3 27 27 H 1.09001 * 109.46866 * 119.99713 * 2 1 3 28 28 H 1.09003 * 110.99303 * 37.80938 * 5 3 2 29 29 H 1.08999 * 111.02714 * 274.00441 * 5 3 2 30 30 H 1.09008 * 110.71014 * 205.96660 * 6 5 3 31 31 H 1.08992 * 110.70954 * 82.73181 * 6 5 3 32 32 H 1.09001 * 109.46530 * 306.45906 * 9 7 6 33 33 H 1.08997 * 109.46865 * 66.45182 * 9 7 6 34 34 H 1.08994 * 109.47069 * 186.45728 * 9 7 6 35 35 H 1.08996 * 109.47008 * 215.70102 * 11 10 7 36 36 H 1.08997 * 109.47191 * 335.70043 * 11 10 7 37 37 H 0.96702 * 114.00111 * 293.08669 * 14 12 11 38 38 H 0.96998 * 119.99842 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6860 1.9711 0.8852 5 6 3.5876 1.4673 -0.0599 6 6 3.8551 2.8676 -0.6720 7 6 2.6866 3.0420 -1.6647 8 1 3.0101 2.7706 -2.6696 9 6 2.1979 4.4918 -1.6493 10 7 1.6033 2.1429 -1.2267 11 6 0.3609 2.8907 -0.9920 12 6 -0.5191 2.8229 -2.2418 13 1 -0.6194 1.7850 -2.5596 14 8 0.0824 3.5859 -3.2897 15 6 -1.8811 3.3863 -1.9283 16 1 -2.0977 3.7554 -0.9367 17 6 -2.8513 3.4295 -2.9071 18 7 -2.5877 2.9796 -4.1145 19 14 -4.5399 4.1272 -2.5183 20 1 -4.5808 4.5627 -1.0992 21 1 -4.8102 5.2901 -3.4014 22 1 -5.5711 3.0831 -2.7453 23 1 -0.3633 -1.0245 0.0807 24 1 -0.3634 0.5822 0.8468 25 1 -0.3633 0.4423 -0.9276 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.9660 0.6783 -0.7099 29 1 4.0189 1.3886 0.9380 30 1 4.8111 2.8832 -1.1954 31 1 3.8240 3.6375 0.0989 32 1 1.9657 4.7859 -0.6257 33 1 2.9774 5.1422 -2.0462 34 1 1.3027 4.5800 -2.2647 35 1 -0.1724 2.4535 -0.1479 36 1 0.5993 3.9312 -0.7715 37 1 0.1068 4.5375 -3.1192 38 1 -3.2701 3.0104 -4.8032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930175447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:09 Heat of formation + Delta-G solvation = -39.694376 kcal Electronic energy + Delta-G solvation = -17201.635938 eV Core-core repulsion = 14658.345454 eV Total energy + Delta-G solvation = -2543.290484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44277 -35.68832 -33.48790 -32.09742 -31.53933 -29.39124 -27.64822 -25.33330 -24.45868 -22.00383 -20.98637 -20.09318 -18.49023 -16.96629 -16.09228 -15.27140 -14.62309 -14.58351 -14.01683 -13.44878 -13.12220 -12.94548 -12.74040 -12.48094 -12.28072 -11.75950 -11.59574 -11.24569 -11.05873 -10.93546 -10.80399 -10.69469 -10.48547 -10.40676 -10.32103 -10.07010 -9.84843 -9.77549 -8.81585 -8.52539 -8.14722 -7.35944 -5.97082 -4.15221 3.27875 3.36432 3.39381 4.37059 4.56977 4.96059 4.97208 5.22989 5.29268 5.49997 5.58296 5.69519 5.76006 5.84572 5.88578 5.96227 6.01535 6.08271 6.15350 6.25103 6.31082 6.36524 6.43249 6.48691 6.58306 6.70906 6.76559 6.82116 6.95786 7.14451 7.66985 7.80719 7.83746 8.09094 8.26874 8.91199 9.45647 9.63113 11.06529 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.008415 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.659778 B = 3326.650109 C = 3814.618632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C 0.069 3.931 4 H 0.045 0.955 5 C -0.125 4.125 6 C -0.140 4.140 7 C 0.081 3.919 8 H 0.079 0.921 9 C -0.187 4.187 10 N -0.509 5.509 11 C 0.003 3.997 12 C 0.242 3.758 13 H 0.060 0.940 14 O -0.556 6.556 15 C -0.573 4.573 16 H 0.054 0.946 17 C 0.079 3.921 18 N -0.857 5.857 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.340 0.660 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 -1.181 7.565 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.040 4.040 4 H 0.063 0.937 5 C -0.163 4.163 6 C -0.179 4.179 7 C -0.027 4.027 8 H 0.097 0.903 9 C -0.244 4.244 10 N -0.234 5.234 11 C -0.124 4.124 12 C 0.184 3.816 13 H 0.078 0.922 14 O -0.362 6.362 15 C -0.611 4.611 16 H 0.072 0.928 17 C -0.127 4.127 18 N -0.493 5.493 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.187 0.813 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.704 -2.175 6.724 12.005 hybrid contribution -0.950 1.503 1.200 2.145 sum 8.754 -0.672 7.924 11.827 Atomic orbital electron populations 1.21852 0.95401 1.00545 1.03316 1.21407 0.96592 0.95214 1.00793 1.22647 0.93392 0.95554 0.92408 0.93739 1.22722 0.95899 0.97397 1.00290 1.22928 0.99145 0.96929 0.98880 1.22242 0.90299 0.91682 0.98513 0.90252 1.22795 1.03792 0.96141 1.01658 1.63721 1.03220 1.27696 1.28716 1.23644 0.90152 0.96880 1.01772 1.19329 0.87358 0.93104 0.81818 0.92197 1.86637 1.82371 1.19376 1.47799 1.21737 0.98004 1.44032 0.97359 0.92816 1.25032 0.98203 0.94475 0.94980 1.70100 1.33287 1.43856 1.02052 0.86670 0.84691 0.78889 0.78443 1.19802 1.20952 1.20918 0.93831 0.93645 0.90243 0.91640 0.93023 0.90934 0.91813 0.91568 0.92056 0.93589 0.93532 0.88168 0.92156 0.92930 0.81262 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.56 37.15 0.32 -2.23 16 2 C -0.10 -1.53 5.68 -26.73 -0.15 -1.68 16 3 C 0.07 1.08 2.51 -66.19 -0.17 0.91 16 4 H 0.04 0.71 7.67 -51.93 -0.40 0.32 16 5 C -0.13 -1.65 6.49 -24.60 -0.16 -1.81 16 6 C -0.14 -1.90 6.47 -24.91 -0.16 -2.06 16 7 C 0.08 1.35 3.79 -66.72 -0.25 1.10 16 8 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 9 C -0.19 -3.04 7.55 37.16 0.28 -2.76 16 10 N -0.51 -9.41 4.46 -215.53 -0.96 -10.37 16 11 C 0.00 0.06 3.37 -3.82 -0.01 0.05 16 12 C 0.24 6.08 2.85 -27.89 -0.08 6.00 16 13 H 0.06 1.72 7.29 -51.92 -0.38 1.34 16 14 O -0.56 -14.11 11.25 -35.23 -0.40 -14.51 16 15 C -0.57 -15.57 8.68 -34.44 -0.30 -15.87 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 18 N -0.86 -25.29 12.84 55.43 0.71 -24.58 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.73 7.67 -51.93 -0.40 0.33 16 25 H 0.08 1.59 5.83 -51.93 -0.30 1.28 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.94 8.06 -51.93 -0.42 0.53 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 32 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.85 2.85 -51.93 -0.15 1.71 16 35 H 0.06 1.26 5.79 -51.93 -0.30 0.96 16 36 H 0.05 1.06 4.32 -51.93 -0.22 0.83 16 37 H 0.34 7.85 6.83 45.56 0.31 8.16 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 284.82 15.07 4.29 4.29 Total: -1.00 -29.17 284.82 -7.68 -36.84 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.52 Total: 8.46 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.78 Total: -16.24 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.25 Total: -34.95 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.40 Total: -14.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.17 -7.68 -36.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930175447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.850 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds