Wall clock time and date at job start Sun Mar 29 2020 21:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.09005 * 110.42131 * 60.05411 * 3 2 1 5 5 C 1.54903 * 110.37466 * 182.36312 * 3 2 1 6 6 C 1.55139 * 101.65278 * 155.90056 * 5 3 2 7 7 C 1.54318 * 103.01918 * 324.34671 * 6 5 3 8 8 H 1.08999 * 109.89104 * 262.88080 * 7 6 5 9 9 C 1.53007 * 110.02477 * 141.76627 * 7 6 5 10 10 N 1.47438 * 107.23269 * 22.28592 * 7 6 5 11 11 C 1.46901 * 111.00238 * 123.25746 * 10 7 6 12 12 C 1.53001 * 109.47400 * 95.69932 * 11 10 7 13 13 H 1.09008 * 109.46871 * 50.56938 * 12 11 10 14 14 O 1.42900 * 109.46875 * 290.57552 * 12 11 10 15 15 C 1.50693 * 109.47419 * 170.57409 * 12 11 10 16 16 H 1.08007 * 119.99991 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00248 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99891 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00169 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47065 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46882 * 119.99302 * 19 17 15 22 22 H 1.48494 * 109.47219 * 239.99127 * 19 17 15 23 23 H 1.09000 * 109.47197 * 184.50671 * 1 2 3 24 24 H 1.09003 * 109.47630 * 304.50937 * 1 2 3 25 25 H 1.09000 * 109.47129 * 64.50700 * 1 2 3 26 26 H 1.08994 * 109.47298 * 239.99844 * 2 1 3 27 27 H 1.09001 * 109.46866 * 119.99713 * 2 1 3 28 28 H 1.09003 * 110.99303 * 37.80938 * 5 3 2 29 29 H 1.08999 * 111.02714 * 274.00441 * 5 3 2 30 30 H 1.09008 * 110.71014 * 205.96660 * 6 5 3 31 31 H 1.08992 * 110.70954 * 82.73181 * 6 5 3 32 32 H 1.09001 * 109.46530 * 306.45906 * 9 7 6 33 33 H 1.08997 * 109.46865 * 66.45182 * 9 7 6 34 34 H 1.08994 * 109.47069 * 186.45728 * 9 7 6 35 35 H 1.08996 * 109.47008 * 215.70102 * 11 10 7 36 36 H 1.08997 * 109.47191 * 335.70043 * 11 10 7 37 37 H 0.96702 * 114.00111 * 293.08669 * 14 12 11 38 38 H 0.96998 * 119.99842 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6860 1.9711 0.8852 5 6 3.5876 1.4673 -0.0599 6 6 3.8551 2.8676 -0.6720 7 6 2.6866 3.0420 -1.6647 8 1 3.0101 2.7706 -2.6696 9 6 2.1979 4.4918 -1.6493 10 7 1.6033 2.1429 -1.2267 11 6 0.3609 2.8907 -0.9920 12 6 -0.5191 2.8229 -2.2418 13 1 -0.6194 1.7850 -2.5596 14 8 0.0824 3.5859 -3.2897 15 6 -1.8811 3.3863 -1.9283 16 1 -2.0977 3.7554 -0.9367 17 6 -2.8513 3.4295 -2.9071 18 7 -2.5877 2.9796 -4.1145 19 14 -4.5399 4.1272 -2.5183 20 1 -4.5808 4.5627 -1.0992 21 1 -4.8102 5.2901 -3.4014 22 1 -5.5711 3.0831 -2.7453 23 1 -0.3633 -1.0245 0.0807 24 1 -0.3634 0.5822 0.8468 25 1 -0.3633 0.4423 -0.9276 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.9660 0.6783 -0.7099 29 1 4.0189 1.3886 0.9380 30 1 4.8111 2.8832 -1.1954 31 1 3.8240 3.6375 0.0989 32 1 1.9657 4.7859 -0.6257 33 1 2.9774 5.1422 -2.0462 34 1 1.3027 4.5800 -2.2647 35 1 -0.1724 2.4535 -0.1479 36 1 0.5993 3.9312 -0.7715 37 1 0.1068 4.5375 -3.1192 38 1 -3.2701 3.0104 -4.8032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930175447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:09 Heat of formation + Delta-G solvation = -59.970957 kcal Electronic energy + Delta-G solvation = -17202.515196 eV Core-core repulsion = 14658.345454 eV Total energy + Delta-G solvation = -2544.169743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81092 -37.55566 -34.81416 -34.17362 -33.01737 -30.73597 -29.46668 -26.63696 -26.27704 -23.50265 -22.39635 -21.47722 -19.94205 -18.96889 -17.46131 -16.75059 -16.64334 -16.31464 -15.55150 -14.91167 -14.65994 -14.40296 -14.13842 -13.93026 -13.73491 -13.21759 -13.13224 -13.00297 -12.82153 -12.65080 -12.29399 -12.13991 -11.95681 -11.74791 -11.62523 -11.48406 -11.29343 -11.22542 -10.82048 -10.64225 -10.03642 -8.85733 -8.10652 -6.36522 1.38913 1.40484 1.52214 2.39143 3.14367 3.21368 3.76835 3.83220 4.07473 4.20458 4.22699 4.40978 4.50746 4.53465 4.59976 4.62630 4.69016 4.83331 4.86774 4.89157 5.00909 5.07936 5.14456 5.16491 5.22090 5.28120 5.40725 5.45856 5.54131 5.60351 5.68269 5.87091 6.09318 6.44924 6.46862 6.80039 7.36747 7.60171 8.93222 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.008415 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.659778 B = 3326.650109 C = 3814.618632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C 0.063 3.937 4 H 0.045 0.955 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.073 3.927 8 H 0.060 0.940 9 C -0.181 4.181 10 N -0.531 5.531 11 C 0.025 3.975 12 C 0.247 3.753 13 H 0.014 0.986 14 O -0.569 6.569 15 C -0.584 4.584 16 H 0.056 0.944 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.281 1.281 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.350 0.650 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -0.749 9.435 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.045 4.045 4 H 0.063 0.937 5 C -0.154 4.154 6 C -0.169 4.169 7 C -0.035 4.035 8 H 0.078 0.922 9 C -0.238 4.238 10 N -0.255 5.255 11 C -0.102 4.102 12 C 0.190 3.810 13 H 0.032 0.968 14 O -0.376 6.376 15 C -0.622 4.622 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.781 3.219 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.207 1.207 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.198 0.802 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.762 -1.739 8.610 13.892 hybrid contribution -1.241 1.335 0.588 1.915 sum 9.521 -0.404 9.198 13.244 Atomic orbital electron populations 1.21782 0.96980 1.00988 1.01007 1.21413 0.95076 0.95249 1.01867 1.22764 0.95493 0.95273 0.90961 0.93714 1.22710 0.93575 0.97200 1.01932 1.22862 0.98302 0.97449 0.98266 1.22289 0.91144 0.91434 0.98623 0.92214 1.22655 1.03207 0.96454 1.01449 1.63552 1.03075 1.28138 1.30758 1.23187 0.90668 0.97620 0.98771 1.19094 0.88126 0.90470 0.83355 0.96838 1.86571 1.82334 1.20222 1.48479 1.22100 0.99181 1.43566 0.97395 0.92552 1.25879 1.02250 0.94783 0.94730 1.70242 1.34711 1.45447 1.03180 0.85557 0.79593 0.78093 0.78610 1.18780 1.20400 1.20696 0.92428 0.93497 0.94493 0.92481 0.89851 0.90734 0.89011 0.89707 0.90990 0.93019 0.91455 0.90823 0.92741 0.92148 0.80195 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 8.56 71.98 0.62 -4.36 16 2 C -0.10 -2.79 5.68 30.59 0.17 -2.62 16 3 C 0.06 1.87 2.51 45.38 0.11 1.98 16 4 H 0.04 1.34 7.67 -2.38 -0.02 1.32 16 5 C -0.12 -2.68 6.49 31.98 0.21 -2.48 16 6 C -0.13 -3.12 6.47 31.77 0.21 -2.92 16 7 C 0.07 2.37 3.79 45.26 0.17 2.54 16 8 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 9 C -0.18 -5.67 7.55 71.98 0.54 -5.13 16 10 N -0.53 -19.56 4.46 -835.82 -3.73 -23.28 16 11 C 0.03 1.07 3.37 86.30 0.29 1.36 16 12 C 0.25 12.95 2.85 29.85 0.09 13.03 16 13 H 0.01 0.84 7.29 -2.38 -0.02 0.82 16 14 O -0.57 -29.95 11.25 -148.98 -1.68 -31.63 16 15 C -0.58 -32.43 8.68 25.60 0.22 -32.20 16 16 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 17 C 0.03 1.46 5.40 84.65 0.46 1.92 16 18 N -0.90 -54.51 12.84 21.45 0.28 -54.23 16 19 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.05 1.49 7.67 -2.39 -0.02 1.48 16 25 H 0.04 1.53 5.83 -2.39 -0.01 1.52 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 32 H 0.05 1.55 6.91 -2.39 -0.02 1.53 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.73 2.85 -2.39 -0.01 2.73 16 35 H 0.05 2.30 5.79 -2.39 -0.01 2.29 16 36 H 0.06 2.42 4.32 -2.39 -0.01 2.41 16 37 H 0.35 16.66 6.83 -74.06 -0.51 16.15 16 38 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -64.17 284.82 0.52 -63.65 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.53 Total: 28.55 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.09 Total: -28.87 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.45 Total: -77.52 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.68 Total: -31.63 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.17 0.52 -63.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930175447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.678 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds