Wall clock time and date at job start Sun Mar 29 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.42393 * 2 1 4 4 C 1.54910 * 110.37143 * 237.69149 * 2 1 3 5 5 C 1.55140 * 101.65312 * 204.10147 * 4 2 1 6 6 C 1.54326 * 103.01835 * 35.65336 * 5 4 2 7 7 C 1.53001 * 109.88487 * 218.31368 * 6 5 4 8 8 C 1.52995 * 109.88964 * 97.12166 * 6 5 4 9 9 N 1.47443 * 107.23026 * 337.71633 * 6 5 4 10 10 C 1.46904 * 110.99776 * 236.74027 * 9 6 5 11 11 C 1.52999 * 109.46939 * 185.89893 * 10 9 6 12 12 H 1.08998 * 109.46961 * 44.22988 * 11 10 9 13 13 O 1.42897 * 109.47604 * 284.22737 * 11 10 9 14 14 C 1.50703 * 109.46834 * 164.22628 * 11 10 9 15 15 H 1.07991 * 120.00377 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99644 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00339 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99708 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46785 * 90.00596 * 18 16 14 20 20 H 1.48497 * 109.47051 * 209.99969 * 18 16 14 21 21 H 1.48500 * 109.47319 * 330.00653 * 18 16 14 22 22 H 1.08996 * 109.46938 * 289.00452 * 1 2 3 23 23 H 1.09004 * 109.47025 * 49.00385 * 1 2 3 24 24 H 1.08993 * 109.47554 * 168.99924 * 1 2 3 25 25 H 1.08998 * 110.99167 * 322.19387 * 4 2 1 26 26 H 1.09001 * 110.98835 * 86.00942 * 4 2 1 27 27 H 1.08999 * 110.70858 * 154.03188 * 5 4 2 28 28 H 1.09000 * 110.70672 * 277.09699 * 5 4 2 29 29 H 1.09001 * 109.46759 * 182.75535 * 7 6 5 30 30 H 1.09000 * 109.47071 * 302.74522 * 7 6 5 31 31 H 1.09000 * 109.47466 * 62.75135 * 7 6 5 32 32 H 1.09004 * 109.47010 * 302.23328 * 8 6 5 33 33 H 1.09000 * 109.46962 * 62.22870 * 8 6 5 34 34 H 1.08999 * 109.47446 * 182.22977 * 8 6 5 35 35 H 1.09003 * 109.46996 * 65.90275 * 10 9 6 36 36 H 1.08993 * 109.47224 * 305.90281 * 10 9 6 37 37 H 0.96703 * 113.99816 * 300.00435 * 13 11 10 38 38 H 0.97000 * 120.00083 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2274 5 6 3.4786 -1.1995 -0.7360 6 6 3.2535 -1.4809 0.7646 7 6 4.4583 -0.9934 1.5719 8 6 3.0457 -2.9801 0.9877 9 7 2.0447 -0.7410 1.1712 10 6 2.3358 0.1715 2.2851 11 6 1.0344 0.8100 2.7746 12 1 0.2597 0.0466 2.8465 13 8 0.6231 1.8207 1.8520 14 6 1.2575 1.4285 4.1307 15 1 2.2301 1.3722 4.5965 16 6 0.2199 2.0672 4.7761 17 7 -0.9645 2.1363 4.2087 18 14 0.4962 2.8333 6.4573 19 1 0.9329 4.2431 6.2931 20 1 -0.7695 2.7944 7.2330 21 1 1.5448 2.0715 7.1822 22 1 -0.3633 0.3346 0.9716 23 1 -0.3633 0.6742 -0.7757 24 1 -0.3634 -1.0087 -0.1961 25 1 1.4514 -1.6486 -1.4399 26 1 2.1388 -0.1269 -2.1002 27 1 3.8119 -2.1004 -1.2512 28 1 4.1948 -0.3899 -0.8758 29 1 4.3141 -1.2392 2.6240 30 1 5.3621 -1.4803 1.2057 31 1 4.5570 0.0865 1.4613 32 1 2.1981 -3.3218 0.3935 33 1 3.9428 -3.5202 0.6850 34 1 2.8482 -3.1665 2.0433 35 1 3.0184 0.9512 1.9472 36 1 2.7962 -0.3860 3.1007 37 1 1.2658 2.5342 1.7379 38 1 -1.6945 2.5853 4.6630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930665124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:15 Heat of formation + Delta-G solvation = -50.689284 kcal Electronic energy + Delta-G solvation = -17272.333874 eV Core-core repulsion = 14728.566615 eV Total energy + Delta-G solvation = -2543.767259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.59703 -35.67028 -32.97831 -32.06065 -31.54325 -28.21177 -27.29373 -27.02889 -24.12682 -23.16699 -20.64908 -20.00830 -18.38240 -16.78027 -15.53660 -15.09396 -14.56976 -14.25558 -14.05983 -13.40250 -13.24981 -13.03649 -12.64247 -12.48901 -12.08141 -11.78132 -11.53509 -11.25912 -11.10421 -10.94132 -10.80942 -10.78396 -10.67983 -10.44421 -10.22946 -10.14760 -9.92432 -9.74704 -8.87312 -8.51328 -8.00888 -7.58670 -5.96349 -4.13114 3.29432 3.36745 3.39364 4.37017 4.52476 4.92170 5.04645 5.22001 5.30710 5.52100 5.55953 5.69465 5.81701 5.90219 5.97391 6.03315 6.05845 6.17247 6.18711 6.28741 6.30603 6.33404 6.42281 6.45751 6.59199 6.63555 6.74618 6.86792 6.98684 7.40761 7.68645 7.82683 7.87210 8.09856 8.28134 8.89669 9.43454 9.63400 11.07805 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037293 B = 0.008137 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.626395 B = 3440.170993 C = 3885.875229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.052 0.948 4 C -0.130 4.130 5 C -0.132 4.132 6 C 0.090 3.910 7 C -0.160 4.160 8 C -0.123 4.123 9 N -0.515 5.515 10 C 0.029 3.971 11 C 0.232 3.768 12 H 0.066 0.934 13 O -0.558 6.558 14 C -0.570 4.570 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.098 0.902 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.070 0.930 37 H 0.336 0.664 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -5.732 -8.344 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.020 4.020 3 H 0.070 0.930 4 C -0.168 4.168 5 C -0.170 4.170 6 C 0.001 3.999 7 C -0.218 4.218 8 C -0.181 4.181 9 N -0.240 5.240 10 C -0.099 4.099 11 C 0.175 3.825 12 H 0.083 0.917 13 O -0.361 6.361 14 C -0.609 4.609 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.117 0.883 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.180 0.820 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.618 -6.422 -8.184 12.329 hybrid contribution 1.339 1.377 0.839 2.096 sum 7.957 -5.045 -7.345 11.946 Atomic orbital electron populations 1.21845 0.93668 0.99192 1.04403 1.22389 0.96640 0.95223 0.87779 0.92979 1.22841 0.95821 1.00189 0.97962 1.22853 0.97477 1.00852 0.95847 1.21719 0.89804 0.95259 0.93162 1.22348 0.97321 1.01227 1.00913 1.21712 1.00332 0.94022 1.02047 1.63639 1.26420 1.26907 1.06997 1.23263 1.00488 0.93763 0.92393 1.19371 0.89934 0.86927 0.86270 0.91668 1.86625 1.48261 1.35921 1.65311 1.21655 0.96822 1.38496 1.03881 0.92919 1.25006 0.95035 0.95450 0.97100 1.70069 1.01065 1.41012 1.37252 0.86716 0.77640 0.79669 0.84571 1.20686 1.21160 1.19929 0.88303 0.94160 0.94537 0.91228 0.91800 0.91581 0.91997 0.91762 0.93160 0.92408 0.92627 0.93513 0.92483 0.96070 0.91159 0.81991 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.83 37.16 0.33 -2.20 16 2 C 0.09 1.55 2.36 -66.19 -0.16 1.39 16 3 H 0.05 0.98 6.98 -51.93 -0.36 0.62 16 4 C -0.13 -1.87 6.49 -24.59 -0.16 -2.03 16 5 C -0.13 -1.78 6.01 -24.90 -0.15 -1.93 16 6 C 0.09 1.38 1.15 -130.61 -0.15 1.23 16 7 C -0.16 -2.32 7.16 37.16 0.27 -2.06 16 8 C -0.12 -1.73 8.71 37.15 0.32 -1.40 16 9 N -0.51 -9.51 4.50 -207.98 -0.94 -10.44 16 10 C 0.03 0.59 3.45 -3.82 -0.01 0.58 16 11 C 0.23 5.79 2.09 -27.88 -0.06 5.73 16 12 H 0.07 1.85 7.46 -51.93 -0.39 1.46 16 13 O -0.56 -13.66 8.59 -35.23 -0.30 -13.96 16 14 C -0.57 -15.58 8.70 -34.44 -0.30 -15.88 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -25.23 12.84 55.43 0.71 -24.52 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.10 2.27 4.49 -51.93 -0.23 2.04 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.65 7.94 -51.93 -0.41 0.23 16 25 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.78 7.83 -51.93 -0.41 0.38 16 28 H 0.06 0.81 7.86 -51.93 -0.41 0.40 16 29 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.88 6.58 -51.93 -0.34 0.54 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.43 6.56 -51.93 -0.34 0.09 16 36 H 0.07 1.48 6.34 -51.93 -0.33 1.15 16 37 H 0.34 7.58 9.02 45.56 0.41 7.99 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -28.72 287.73 -7.03 -35.74 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.65 Total: 7.05 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.17 Total: -14.43 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.22 Total: -34.96 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.30 Total: -13.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.72 -7.03 -35.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930665124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.947 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds