Wall clock time and date at job start Sun Mar 29 2020 22:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.42393 * 2 1 4 4 C 1.54910 * 110.37143 * 237.69149 * 2 1 3 5 5 C 1.55140 * 101.65312 * 204.10147 * 4 2 1 6 6 C 1.54326 * 103.01835 * 35.65336 * 5 4 2 7 7 C 1.53001 * 109.88487 * 218.31368 * 6 5 4 8 8 C 1.52995 * 109.88964 * 97.12166 * 6 5 4 9 9 N 1.47443 * 107.23026 * 337.71633 * 6 5 4 10 10 C 1.46904 * 110.99776 * 236.74027 * 9 6 5 11 11 C 1.52999 * 109.46939 * 185.89893 * 10 9 6 12 12 H 1.08998 * 109.46961 * 44.22988 * 11 10 9 13 13 O 1.42897 * 109.47604 * 284.22737 * 11 10 9 14 14 C 1.50703 * 109.46834 * 164.22628 * 11 10 9 15 15 H 1.07991 * 120.00377 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99644 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00339 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99708 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46785 * 90.00596 * 18 16 14 20 20 H 1.48497 * 109.47051 * 209.99969 * 18 16 14 21 21 H 1.48500 * 109.47319 * 330.00653 * 18 16 14 22 22 H 1.08996 * 109.46938 * 289.00452 * 1 2 3 23 23 H 1.09004 * 109.47025 * 49.00385 * 1 2 3 24 24 H 1.08993 * 109.47554 * 168.99924 * 1 2 3 25 25 H 1.08998 * 110.99167 * 322.19387 * 4 2 1 26 26 H 1.09001 * 110.98835 * 86.00942 * 4 2 1 27 27 H 1.08999 * 110.70858 * 154.03188 * 5 4 2 28 28 H 1.09000 * 110.70672 * 277.09699 * 5 4 2 29 29 H 1.09001 * 109.46759 * 182.75535 * 7 6 5 30 30 H 1.09000 * 109.47071 * 302.74522 * 7 6 5 31 31 H 1.09000 * 109.47466 * 62.75135 * 7 6 5 32 32 H 1.09004 * 109.47010 * 302.23328 * 8 6 5 33 33 H 1.09000 * 109.46962 * 62.22870 * 8 6 5 34 34 H 1.08999 * 109.47446 * 182.22977 * 8 6 5 35 35 H 1.09003 * 109.46996 * 65.90275 * 10 9 6 36 36 H 1.08993 * 109.47224 * 305.90281 * 10 9 6 37 37 H 0.96703 * 113.99816 * 300.00435 * 13 11 10 38 38 H 0.97000 * 120.00083 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2274 5 6 3.4786 -1.1995 -0.7360 6 6 3.2535 -1.4809 0.7646 7 6 4.4583 -0.9934 1.5719 8 6 3.0457 -2.9801 0.9877 9 7 2.0447 -0.7410 1.1712 10 6 2.3358 0.1715 2.2851 11 6 1.0344 0.8100 2.7746 12 1 0.2597 0.0466 2.8465 13 8 0.6231 1.8207 1.8520 14 6 1.2575 1.4285 4.1307 15 1 2.2301 1.3722 4.5965 16 6 0.2199 2.0672 4.7761 17 7 -0.9645 2.1363 4.2087 18 14 0.4962 2.8333 6.4573 19 1 0.9329 4.2431 6.2931 20 1 -0.7695 2.7944 7.2330 21 1 1.5448 2.0715 7.1822 22 1 -0.3633 0.3346 0.9716 23 1 -0.3633 0.6742 -0.7757 24 1 -0.3634 -1.0087 -0.1961 25 1 1.4514 -1.6486 -1.4399 26 1 2.1388 -0.1269 -2.1002 27 1 3.8119 -2.1004 -1.2512 28 1 4.1948 -0.3899 -0.8758 29 1 4.3141 -1.2392 2.6240 30 1 5.3621 -1.4803 1.2057 31 1 4.5570 0.0865 1.4613 32 1 2.1981 -3.3218 0.3935 33 1 3.9428 -3.5202 0.6850 34 1 2.8482 -3.1665 2.0433 35 1 3.0184 0.9512 1.9472 36 1 2.7962 -0.3860 3.1007 37 1 1.2658 2.5342 1.7379 38 1 -1.6945 2.5853 4.6630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930665124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:14 Heat of formation + Delta-G solvation = -70.588795 kcal Electronic energy + Delta-G solvation = -17273.196781 eV Core-core repulsion = 14728.566615 eV Total energy + Delta-G solvation = -2544.630167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95432 -37.54432 -34.42667 -34.04828 -33.06706 -29.70982 -29.01669 -28.21295 -26.01099 -24.39014 -22.46350 -21.37236 -19.84781 -18.69038 -16.95600 -16.66808 -16.51979 -15.92072 -15.63905 -14.99512 -14.65776 -14.50587 -14.17776 -13.77928 -13.53320 -13.09072 -13.07621 -12.90144 -12.76085 -12.57431 -12.48512 -12.27613 -12.12229 -12.03016 -11.72779 -11.43431 -11.32348 -11.22468 -10.87524 -10.64686 -9.96384 -9.03250 -8.10476 -6.34937 1.39494 1.40400 1.50891 2.39498 3.12652 3.15460 3.72729 3.86322 4.05951 4.25721 4.32012 4.35825 4.52217 4.53741 4.63274 4.68984 4.77324 4.90401 4.94198 4.96860 5.01853 5.02796 5.05764 5.11405 5.23776 5.27822 5.34193 5.46951 5.56593 5.62474 5.74333 5.91777 6.12566 6.44483 6.47819 6.77729 7.36629 7.59760 8.93457 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037293 B = 0.008137 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.626395 B = 3440.170993 C = 3885.875229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.084 3.916 3 H 0.039 0.961 4 C -0.121 4.121 5 C -0.123 4.123 6 C 0.081 3.919 7 C -0.156 4.156 8 C -0.119 4.119 9 N -0.531 5.531 10 C 0.051 3.949 11 C 0.240 3.760 12 H 0.022 0.978 13 O -0.563 6.563 14 C -0.586 4.586 15 H 0.054 0.946 16 C 0.028 3.972 17 N -0.896 5.896 18 Si 0.956 3.044 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.267 1.267 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.343 0.657 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 -6.249 -9.166 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.057 0.943 4 C -0.159 4.159 5 C -0.161 4.161 6 C -0.008 4.008 7 C -0.214 4.214 8 C -0.177 4.177 9 N -0.256 5.256 10 C -0.078 4.078 11 C 0.182 3.818 12 H 0.040 0.960 13 O -0.367 6.367 14 C -0.624 4.624 15 H 0.073 0.927 16 C -0.175 4.175 17 N -0.533 5.533 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.191 1.191 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.188 0.812 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.492 -6.946 -9.011 14.197 hybrid contribution 0.734 1.505 1.059 1.981 sum 9.226 -5.442 -7.953 13.341 Atomic orbital electron populations 1.21717 0.95121 0.99516 1.02027 1.22373 0.95476 0.95174 0.89337 0.94333 1.22785 0.96257 1.00121 0.96768 1.22828 0.96922 1.02286 0.94102 1.21935 0.88601 0.95442 0.94839 1.22290 0.98203 1.00788 1.00111 1.21691 1.01635 0.93345 1.01047 1.63553 1.28673 1.26438 1.06904 1.22822 0.97743 0.93941 0.93264 1.19085 0.90518 0.86167 0.85995 0.96014 1.86608 1.48804 1.36271 1.64986 1.22064 0.96888 1.38370 1.05116 0.92740 1.25841 0.94691 0.95991 1.00973 1.70213 1.01960 1.42115 1.39049 0.85621 0.77601 0.78919 0.79781 1.19865 1.20966 1.19139 0.92800 0.93172 0.93892 0.90774 0.89911 0.88969 0.91308 0.93140 0.90349 0.93420 0.92910 0.90592 0.94127 0.95677 0.91832 0.81215 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.83 71.98 0.64 -4.21 16 2 C 0.08 2.92 2.36 45.39 0.11 3.03 16 3 H 0.04 1.43 6.98 -2.39 -0.02 1.42 16 4 C -0.12 -3.15 6.49 31.98 0.21 -2.94 16 5 C -0.12 -2.87 6.01 31.78 0.19 -2.68 16 6 C 0.08 2.30 1.15 3.87 0.00 2.31 16 7 C -0.16 -4.20 7.16 71.98 0.52 -3.69 16 8 C -0.12 -3.07 8.71 71.98 0.63 -2.44 16 9 N -0.53 -19.45 4.50 -811.92 -3.65 -23.11 16 10 C 0.05 2.12 3.45 86.30 0.30 2.42 16 11 C 0.24 12.40 2.09 29.85 0.06 12.46 16 12 H 0.02 1.32 7.46 -2.39 -0.02 1.30 16 13 O -0.56 -28.56 8.59 -148.98 -1.28 -29.84 16 14 C -0.59 -32.68 8.70 25.60 0.22 -32.46 16 15 H 0.05 2.95 7.74 -2.92 -0.02 2.93 16 16 C 0.03 1.56 5.40 84.66 0.46 2.01 16 17 N -0.90 -54.10 12.84 21.45 0.28 -53.83 16 18 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H 0.05 2.58 4.49 -2.39 -0.01 2.57 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.53 7.94 -2.39 -0.02 1.52 16 25 H 0.07 1.87 7.92 -2.39 -0.02 1.86 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.09 1.72 7.83 -2.39 -0.02 1.70 16 28 H 0.07 1.54 7.86 -2.39 -0.02 1.52 16 29 H 0.05 1.48 6.73 -2.39 -0.02 1.47 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.37 6.58 -2.39 -0.02 1.35 16 32 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.03 1.03 6.56 -2.39 -0.02 1.01 16 36 H 0.06 2.72 6.34 -2.39 -0.02 2.71 16 37 H 0.34 15.91 9.02 -74.06 -0.67 15.24 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -62.92 287.73 1.06 -61.86 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.36 Total: 25.08 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.33 Total: -26.19 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.38 Total: -76.93 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.28 Total: -29.84 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -62.92 1.06 -61.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930665124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.726 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds