Wall clock time and date at job start Sun Mar 29 2020 22:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.72726 * 2 1 4 4 C 1.54938 * 110.66934 * 123.09351 * 2 1 3 5 5 C 1.54596 * 102.92114 * 155.85263 * 4 2 1 6 6 C 1.53998 * 105.13853 * 338.04033 * 5 4 2 7 7 C 1.52998 * 109.92023 * 239.42389 * 6 5 4 8 8 C 1.53003 * 109.91373 * 118.13384 * 6 5 4 9 9 N 1.47897 * 107.05705 * 358.78013 * 6 5 4 10 10 C 1.46897 * 110.99945 * 145.84451 * 9 6 5 11 11 C 1.53004 * 109.47505 * 183.37040 * 10 9 6 12 12 H 1.09006 * 109.46760 * 67.19610 * 11 10 9 13 13 O 1.42904 * 109.46544 * 307.20362 * 11 10 9 14 14 C 1.50689 * 109.47451 * 187.20287 * 11 10 9 15 15 H 1.08005 * 120.00378 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00131 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99765 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00314 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46709 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47459 * 119.99286 * 18 16 14 21 21 H 1.48502 * 109.46999 * 239.99592 * 18 16 14 22 22 H 1.09004 * 109.46687 * 192.35370 * 1 2 3 23 23 H 1.08999 * 109.46993 * 312.34743 * 1 2 3 24 24 H 1.08991 * 109.47418 * 72.35528 * 1 2 3 25 25 H 1.09004 * 110.72573 * 274.20837 * 4 2 1 26 26 H 1.08997 * 110.72425 * 37.49111 * 4 2 1 27 27 H 1.08994 * 110.31187 * 96.95705 * 5 4 2 28 28 H 1.09007 * 110.30971 * 219.12814 * 5 4 2 29 29 H 1.08993 * 109.47514 * 177.59176 * 7 6 5 30 30 H 1.09004 * 109.46989 * 297.59225 * 7 6 5 31 31 H 1.09000 * 109.46930 * 57.58753 * 7 6 5 32 32 H 1.09005 * 109.46701 * 296.59062 * 8 6 5 33 33 H 1.08991 * 109.47464 * 56.59693 * 8 6 5 34 34 H 1.09003 * 109.46707 * 176.60120 * 8 6 5 35 35 H 1.09000 * 109.47592 * 63.36833 * 10 9 6 36 36 H 1.08998 * 109.47234 * 303.36803 * 10 9 6 37 37 H 0.96700 * 113.99685 * 299.98989 * 13 11 10 38 38 H 0.97002 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7915 1.2145 5 6 3.4854 -1.2195 0.7423 6 6 3.4279 -1.1647 -0.7956 7 6 3.7377 -2.5449 -1.3785 8 6 4.4332 -0.1365 -1.3183 9 7 2.0543 -0.7588 -1.1642 10 6 2.0580 0.0719 -2.3757 11 6 0.6330 0.5407 -2.6771 12 1 0.3044 1.2285 -1.8980 13 8 -0.2417 -0.5887 -2.7155 14 6 0.6065 1.2422 -4.0105 15 1 1.5151 1.3440 -4.5855 16 6 -0.5777 1.7550 -4.4963 17 7 -1.6840 1.6315 -3.7960 18 14 -0.6105 2.6252 -6.1489 19 1 0.7551 2.6316 -6.7321 20 1 -1.5372 1.9131 -7.0650 21 1 -1.0755 4.0233 -5.9629 22 1 -0.3633 -1.0039 0.2199 23 1 -0.3633 0.6923 0.7595 24 1 -0.3634 0.3115 -0.9792 25 1 2.1430 -0.1512 2.0941 26 1 1.4562 -1.6643 1.4172 27 1 4.2374 -0.5257 1.1178 28 1 3.7046 -2.2336 1.0767 29 1 3.6532 -2.5081 -2.4645 30 1 4.7511 -2.8367 -1.1026 31 1 3.0296 -3.2734 -0.9834 32 1 4.1555 0.8561 -0.9633 33 1 5.4302 -0.3863 -0.9559 34 1 4.4296 -0.1466 -2.4083 35 1 2.4336 -0.5123 -3.2158 36 1 2.7002 0.9387 -2.2199 37 1 -0.0088 -1.2439 -3.3874 38 1 -2.5171 1.9920 -4.1379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930665125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:16 Heat of formation + Delta-G solvation = -41.039377 kcal Electronic energy + Delta-G solvation = -17295.401433 eV Core-core repulsion = 14752.052626 eV Total energy + Delta-G solvation = -2543.348808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.61939 -35.68746 -32.94989 -32.06921 -31.55637 -28.02590 -27.48678 -27.05672 -24.21923 -23.23717 -20.79062 -19.67634 -18.45324 -16.82275 -15.53177 -14.98650 -14.57368 -14.31428 -14.14851 -13.79396 -13.25375 -12.88008 -12.45240 -12.39265 -11.92963 -11.66022 -11.45209 -11.41524 -11.11719 -10.98122 -10.89883 -10.84373 -10.69145 -10.40275 -10.25299 -10.13383 -10.00379 -9.71814 -8.75711 -8.40073 -7.98268 -7.62339 -5.98086 -4.14516 3.27886 3.36370 3.39494 4.36804 4.52864 4.91963 5.05478 5.22075 5.30343 5.49284 5.54737 5.68641 5.79652 5.89093 5.91726 6.02232 6.10293 6.16173 6.20427 6.26257 6.28227 6.30653 6.42111 6.52638 6.54297 6.60574 6.71940 6.86542 6.93188 7.36573 7.73764 7.76301 7.86958 7.97679 8.27061 8.88353 9.50265 9.66156 11.06029 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037991 B = 0.008115 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.843380 B = 3449.707111 C = 3819.052365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.040 0.960 4 C -0.120 4.120 5 C -0.121 4.121 6 C 0.081 3.919 7 C -0.123 4.123 8 C -0.166 4.166 9 N -0.490 5.490 10 C 0.019 3.981 11 C 0.227 3.773 12 H 0.066 0.934 13 O -0.551 6.551 14 C -0.572 4.572 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.122 0.878 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.343 0.657 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 -4.697 7.049 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.037 4.037 3 H 0.058 0.942 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.009 4.009 7 C -0.181 4.181 8 C -0.224 4.224 9 N -0.214 5.214 10 C -0.109 4.109 11 C 0.169 3.831 12 H 0.083 0.917 13 O -0.353 6.353 14 C -0.610 4.610 15 H 0.072 0.928 16 C -0.126 4.126 17 N -0.495 5.495 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.140 0.860 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.187 0.813 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.287 -4.779 7.438 12.117 hybrid contribution 0.883 1.078 -1.280 1.892 sum 9.170 -3.701 6.159 11.650 Atomic orbital electron populations 1.22392 0.92978 1.00919 1.05773 1.22604 0.96953 0.94614 0.89534 0.94151 1.22561 0.95817 1.00058 0.97358 1.22502 0.97487 1.01186 0.94730 1.21807 0.89745 0.95262 0.94053 1.21692 0.99750 0.95683 1.00961 1.22413 0.98745 0.99386 1.01887 1.64868 1.15266 1.38352 1.02945 1.23242 1.01900 0.94627 0.91083 1.19470 0.82606 0.85144 0.95831 0.91714 1.86515 1.56672 1.33411 1.58717 1.21734 0.94776 1.38917 1.05620 0.92843 1.25001 0.95666 0.94961 0.96979 1.70072 0.98934 1.43354 1.37137 0.86657 0.78070 0.79432 0.84439 1.19832 1.20903 1.20986 0.93177 0.94612 0.86020 0.92031 0.91049 0.92115 0.91569 0.92771 0.93403 0.92239 0.92764 0.93034 0.91971 0.92021 0.95088 0.81347 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.67 37.16 0.32 -2.92 16 2 C 0.07 1.28 2.60 -65.79 -0.17 1.11 16 3 H 0.04 0.76 8.01 -51.93 -0.42 0.34 16 4 C -0.12 -1.76 6.50 -24.87 -0.16 -1.92 16 5 C -0.12 -1.63 6.21 -25.37 -0.16 -1.79 16 6 C 0.08 1.24 0.89 -130.53 -0.12 1.13 16 7 C -0.12 -1.72 8.63 37.16 0.32 -1.40 16 8 C -0.17 -2.42 6.93 37.16 0.26 -2.16 16 9 N -0.49 -9.04 4.45 -207.28 -0.92 -9.96 16 10 C 0.02 0.40 3.43 -3.82 -0.01 0.39 16 11 C 0.23 5.63 1.89 -27.89 -0.05 5.57 16 12 H 0.07 1.75 5.64 -51.93 -0.29 1.46 16 13 O -0.55 -13.89 10.56 -35.23 -0.37 -14.26 16 14 C -0.57 -15.61 8.75 -34.44 -0.30 -15.91 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 16 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 17 N -0.86 -25.08 12.84 55.43 0.71 -24.37 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.12 2.90 2.97 -51.93 -0.15 2.74 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16 27 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 28 H 0.07 0.81 7.69 -51.92 -0.40 0.41 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.83 7.40 -51.93 -0.38 0.45 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.95 6.98 -51.93 -0.36 0.59 16 35 H 0.06 1.29 7.92 -51.93 -0.41 0.88 16 36 H 0.03 0.65 6.04 -51.93 -0.31 0.33 16 37 H 0.34 8.05 9.04 45.56 0.41 8.46 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 288.66 15.07 4.35 4.35 Total: -1.00 -28.68 288.66 -7.04 -35.73 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.62 Total: 8.12 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.17 Total: -15.77 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.21 Total: -34.33 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.37 Total: -14.26 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.68 -7.04 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930665125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.313 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds