Wall clock time and date at job start Sun Mar 29 2020 22:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.72589 * 2 1 4 4 C 1.54943 * 110.66798 * 236.90542 * 2 1 3 5 5 C 1.54594 * 102.91707 * 204.14919 * 4 2 1 6 6 C 1.52997 * 110.30922 * 263.03868 * 5 4 2 7 7 C 1.53010 * 110.38956 * 140.91682 * 5 4 2 8 8 C 1.53990 * 105.14548 * 21.95817 * 5 4 2 9 9 N 1.47906 * 107.05714 * 1.22338 * 8 5 4 10 10 C 1.46905 * 111.00035 * 214.15959 * 9 8 5 11 11 C 1.52998 * 109.46749 * 294.30134 * 10 9 8 12 12 H 1.08998 * 109.47421 * 57.61231 * 11 10 9 13 13 O 1.42903 * 109.46962 * 297.61259 * 11 10 9 14 14 C 1.50703 * 109.46782 * 177.61685 * 11 10 9 15 15 H 1.07997 * 120.00106 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99744 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99828 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99754 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47409 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47284 * 120.00005 * 18 16 14 21 21 H 1.48501 * 109.47132 * 239.99613 * 18 16 14 22 22 H 1.09001 * 109.46964 * 298.35574 * 1 2 3 23 23 H 1.08994 * 109.47298 * 58.36134 * 1 2 3 24 24 H 1.09005 * 109.46772 * 178.35756 * 1 2 3 25 25 H 1.08990 * 110.72212 * 85.78981 * 4 2 1 26 26 H 1.09001 * 110.71790 * 322.50528 * 4 2 1 27 27 H 1.08997 * 109.47276 * 177.17895 * 6 5 4 28 28 H 1.09002 * 109.47318 * 297.17127 * 6 5 4 29 29 H 1.08998 * 109.47533 * 57.17131 * 6 5 4 30 30 H 1.09003 * 109.46682 * 302.77781 * 7 5 4 31 31 H 1.08999 * 109.46835 * 62.77452 * 7 5 4 32 32 H 1.09000 * 109.46879 * 182.77745 * 7 5 4 33 33 H 1.09003 * 109.91678 * 241.87040 * 8 5 4 34 34 H 1.09001 * 109.91792 * 120.57409 * 8 5 4 35 35 H 1.09004 * 109.46935 * 54.29700 * 10 9 8 36 36 H 1.08998 * 109.47204 * 174.30005 * 10 9 8 37 37 H 0.96704 * 114.00209 * 300.00353 * 13 11 10 38 38 H 0.97003 * 119.99843 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2145 5 6 3.4853 -1.2196 -0.7422 6 6 4.5409 -0.2456 -1.2694 7 6 3.7954 -2.6425 -1.2116 8 6 3.4279 -1.1647 0.7956 9 7 2.0542 -0.7589 1.1643 10 6 2.0580 0.0720 2.3758 11 6 2.5304 -0.7646 3.5664 12 1 3.5213 -1.1674 3.3572 13 8 1.6155 -1.8403 3.7856 14 6 2.5902 0.1026 4.7975 15 1 2.3189 1.1462 4.7366 16 6 2.9913 -0.4363 6.0016 17 7 3.3212 -1.7072 6.0758 18 14 3.0662 0.6388 7.5273 19 1 2.6487 2.0209 7.1799 20 1 2.1544 0.0915 8.5638 21 1 4.4556 0.6588 8.0511 22 1 -0.3633 0.4881 0.9044 23 1 -0.3633 0.5390 -0.8749 24 1 -0.3633 -1.0273 -0.0295 25 1 2.1430 -0.1513 -2.0941 26 1 1.4561 -1.6644 -1.4171 27 1 5.5213 -0.5309 -0.8878 28 1 4.5522 -0.2767 -2.3589 29 1 4.3015 0.7645 -0.9372 30 1 3.0299 -3.3230 -0.8385 31 1 3.8072 -2.6712 -2.3011 32 1 4.7698 -2.9469 -0.8294 33 1 4.1441 -0.4321 1.1680 34 1 3.6486 -2.1480 1.2108 35 1 2.7324 0.9167 2.2349 36 1 1.0500 0.4399 2.5672 37 1 0.7117 -1.5550 3.9779 38 1 3.6031 -2.0865 6.9230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930721788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:18 Heat of formation + Delta-G solvation = -64.518977 kcal Electronic energy + Delta-G solvation = -16787.962523 eV Core-core repulsion = 14243.595564 eV Total energy + Delta-G solvation = -2544.366959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37810 -35.77161 -33.72055 -32.03935 -31.30535 -28.06539 -27.21327 -26.48797 -25.18424 -23.46796 -20.45973 -19.76427 -18.71517 -16.89178 -15.54229 -14.73392 -14.59816 -14.31044 -13.88850 -13.73734 -13.46758 -13.17239 -12.93251 -12.65130 -12.36376 -11.86159 -11.60047 -11.43985 -11.30640 -11.26645 -10.96209 -10.88179 -10.66304 -10.41293 -10.38266 -10.20566 -10.08730 -9.98208 -8.92384 -8.53639 -8.02194 -7.64301 -5.96858 -4.15056 3.28177 3.36304 3.39627 4.37372 4.56552 4.76254 4.88466 5.08448 5.30646 5.36675 5.47564 5.58379 5.69884 5.75031 5.82692 5.88880 5.91230 6.04325 6.08380 6.12327 6.17201 6.21259 6.29477 6.31127 6.40183 6.50490 6.56398 6.66279 6.68401 6.88997 7.53183 7.71698 7.81599 7.92239 8.25500 8.89395 9.50765 9.67626 11.07231 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036081 B = 0.006903 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.850104 B = 4055.398949 C = 4292.739050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 H 0.042 0.958 4 C -0.107 4.107 5 C -0.080 4.080 6 C -0.137 4.137 7 C -0.133 4.133 8 C 0.051 3.949 9 N -0.499 5.499 10 C 0.023 3.977 11 C 0.238 3.762 12 H 0.053 0.947 13 O -0.554 6.554 14 C -0.574 4.574 15 H 0.054 0.946 16 C 0.079 3.921 17 N -0.858 5.858 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.283 1.283 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.342 0.658 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 2.255 -13.875 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 H 0.060 0.940 4 C -0.145 4.145 5 C -0.081 4.081 6 C -0.194 4.194 7 C -0.190 4.190 8 C -0.077 4.077 9 N -0.223 5.223 10 C -0.105 4.105 11 C 0.180 3.820 12 H 0.070 0.930 13 O -0.356 6.356 14 C -0.612 4.612 15 H 0.072 0.928 16 C -0.127 4.127 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.209 1.209 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.185 0.815 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.913 1.294 -13.749 13.839 hybrid contribution 0.197 1.814 0.962 2.063 sum -0.716 3.107 -12.786 13.178 Atomic orbital electron populations 1.21634 0.94382 1.02166 1.00787 1.22751 0.95735 0.95454 0.91432 0.93970 1.22633 0.95334 0.99785 0.96724 1.21449 0.95103 0.95720 0.95785 1.21889 0.98485 0.98775 1.00250 1.21825 1.01702 0.95413 1.00096 1.22929 0.90550 1.01640 0.92620 1.64801 1.18210 1.37249 1.02056 1.23238 1.00305 0.95115 0.91839 1.19291 0.89637 0.84646 0.88434 0.92957 1.86559 1.20395 1.35498 1.93115 1.21718 1.48378 0.96484 0.94638 0.92781 1.25028 0.94067 0.94704 0.98866 1.70099 1.42325 1.11588 1.25378 0.86639 0.77712 0.80824 0.83325 1.19783 1.20843 1.20933 0.92724 0.93176 0.91947 0.91895 0.90847 0.92574 0.92908 0.92955 0.92084 0.93210 0.92750 0.94004 0.90212 0.95691 0.91910 0.81536 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.48 37.16 0.35 -1.48 16 2 C 0.05 0.85 2.92 -65.78 -0.19 0.65 16 3 H 0.04 0.66 8.02 -51.93 -0.42 0.25 16 4 C -0.11 -1.42 5.60 -24.87 -0.14 -1.56 16 5 C -0.08 -1.11 0.97 -153.15 -0.15 -1.25 16 6 C -0.14 -1.66 8.21 37.16 0.30 -1.36 16 7 C -0.13 -1.66 8.22 37.16 0.31 -1.36 16 8 C 0.05 0.90 4.88 -2.75 -0.01 0.89 16 9 N -0.50 -9.40 4.90 -222.62 -1.09 -10.49 16 10 C 0.02 0.49 4.27 -3.82 -0.02 0.48 16 11 C 0.24 6.18 2.79 -27.88 -0.08 6.10 16 12 H 0.05 1.50 7.29 -51.93 -0.38 1.12 16 13 O -0.55 -14.84 12.64 -35.23 -0.45 -15.28 16 14 C -0.57 -16.06 8.76 -34.44 -0.30 -16.36 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.79 12.84 55.43 0.71 -25.07 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H 0.05 0.80 7.39 -51.93 -0.38 0.41 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 25 H 0.06 0.72 7.85 -51.93 -0.41 0.32 16 26 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.78 7.18 -51.93 -0.37 0.41 16 34 H 0.08 1.56 7.67 -51.93 -0.40 1.16 16 35 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 36 H 0.06 1.32 7.32 -51.93 -0.38 0.94 16 37 H 0.34 8.25 9.04 45.56 0.41 8.66 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -30.39 301.35 -7.39 -37.78 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.06 Total: 5.20 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.02 Total: -13.07 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.38 Total: -35.57 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.45 Total: -15.28 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.39 -7.39 -37.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930721788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.736 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds