Wall clock time and date at job start Sun Mar 29 2020 22:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.72589 * 2 1 4 4 C 1.54943 * 110.66798 * 236.90542 * 2 1 3 5 5 C 1.54594 * 102.91707 * 204.14919 * 4 2 1 6 6 C 1.52997 * 110.30922 * 263.03868 * 5 4 2 7 7 C 1.53010 * 110.38956 * 140.91682 * 5 4 2 8 8 C 1.53990 * 105.14548 * 21.95817 * 5 4 2 9 9 N 1.47906 * 107.05714 * 1.22338 * 8 5 4 10 10 C 1.46905 * 111.00035 * 214.15959 * 9 8 5 11 11 C 1.52998 * 109.46749 * 294.30134 * 10 9 8 12 12 H 1.08998 * 109.47421 * 57.61231 * 11 10 9 13 13 O 1.42903 * 109.46962 * 297.61259 * 11 10 9 14 14 C 1.50703 * 109.46782 * 177.61685 * 11 10 9 15 15 H 1.07997 * 120.00106 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99744 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99828 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99754 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47409 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47284 * 120.00005 * 18 16 14 21 21 H 1.48501 * 109.47132 * 239.99613 * 18 16 14 22 22 H 1.09001 * 109.46964 * 298.35574 * 1 2 3 23 23 H 1.08994 * 109.47298 * 58.36134 * 1 2 3 24 24 H 1.09005 * 109.46772 * 178.35756 * 1 2 3 25 25 H 1.08990 * 110.72212 * 85.78981 * 4 2 1 26 26 H 1.09001 * 110.71790 * 322.50528 * 4 2 1 27 27 H 1.08997 * 109.47276 * 177.17895 * 6 5 4 28 28 H 1.09002 * 109.47318 * 297.17127 * 6 5 4 29 29 H 1.08998 * 109.47533 * 57.17131 * 6 5 4 30 30 H 1.09003 * 109.46682 * 302.77781 * 7 5 4 31 31 H 1.08999 * 109.46835 * 62.77452 * 7 5 4 32 32 H 1.09000 * 109.46879 * 182.77745 * 7 5 4 33 33 H 1.09003 * 109.91678 * 241.87040 * 8 5 4 34 34 H 1.09001 * 109.91792 * 120.57409 * 8 5 4 35 35 H 1.09004 * 109.46935 * 54.29700 * 10 9 8 36 36 H 1.08998 * 109.47204 * 174.30005 * 10 9 8 37 37 H 0.96704 * 114.00209 * 300.00353 * 13 11 10 38 38 H 0.97003 * 119.99843 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2145 5 6 3.4853 -1.2196 -0.7422 6 6 4.5409 -0.2456 -1.2694 7 6 3.7954 -2.6425 -1.2116 8 6 3.4279 -1.1647 0.7956 9 7 2.0542 -0.7589 1.1643 10 6 2.0580 0.0720 2.3758 11 6 2.5304 -0.7646 3.5664 12 1 3.5213 -1.1674 3.3572 13 8 1.6155 -1.8403 3.7856 14 6 2.5902 0.1026 4.7975 15 1 2.3189 1.1462 4.7366 16 6 2.9913 -0.4363 6.0016 17 7 3.3212 -1.7072 6.0758 18 14 3.0662 0.6388 7.5273 19 1 2.6487 2.0209 7.1799 20 1 2.1544 0.0915 8.5638 21 1 4.4556 0.6588 8.0511 22 1 -0.3633 0.4881 0.9044 23 1 -0.3633 0.5390 -0.8749 24 1 -0.3633 -1.0273 -0.0295 25 1 2.1430 -0.1513 -2.0941 26 1 1.4561 -1.6644 -1.4171 27 1 5.5213 -0.5309 -0.8878 28 1 4.5522 -0.2767 -2.3589 29 1 4.3015 0.7645 -0.9372 30 1 3.0299 -3.3230 -0.8385 31 1 3.8072 -2.6712 -2.3011 32 1 4.7698 -2.9469 -0.8294 33 1 4.1441 -0.4321 1.1680 34 1 3.6486 -2.1480 1.2108 35 1 2.7324 0.9167 2.2349 36 1 1.0500 0.4399 2.5672 37 1 0.7117 -1.5550 3.9779 38 1 3.6031 -2.0865 6.9230 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930721788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:18 Heat of formation + Delta-G solvation = -86.464079 kcal Electronic energy + Delta-G solvation = -16788.914134 eV Core-core repulsion = 14243.595564 eV Total energy + Delta-G solvation = -2545.318571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69767 -37.70716 -35.10084 -34.23286 -32.71693 -29.87992 -28.19902 -27.80690 -26.75271 -25.18036 -22.24269 -21.12497 -19.95114 -18.98806 -16.91852 -16.68226 -16.39534 -15.93353 -15.51534 -15.11683 -14.91846 -14.50154 -14.32065 -13.98281 -13.76488 -13.27765 -13.00750 -12.93548 -12.85249 -12.69729 -12.59064 -12.34307 -12.29192 -11.95828 -11.85425 -11.53631 -11.43773 -11.21653 -11.00546 -10.72388 -10.08486 -9.18756 -8.14910 -6.41662 1.38068 1.38775 1.51476 2.36878 3.09929 3.14885 3.59101 3.72631 3.93979 4.22397 4.29177 4.33095 4.39713 4.44935 4.56144 4.60621 4.78498 4.80100 4.84549 4.85888 4.90324 4.98810 5.05265 5.05488 5.14130 5.17208 5.29879 5.41338 5.44558 5.51415 5.58189 5.74348 6.00110 6.18239 6.26670 6.72445 7.32681 7.60209 8.89832 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036081 B = 0.006903 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.850104 B = 4055.398949 C = 4292.739050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.050 3.950 3 H 0.043 0.957 4 C -0.098 4.098 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.130 4.130 8 C 0.049 3.951 9 N -0.514 5.514 10 C 0.043 3.957 11 C 0.240 3.760 12 H 0.015 0.985 13 O -0.570 6.570 14 C -0.590 4.590 15 H 0.057 0.943 16 C 0.025 3.975 17 N -0.899 5.899 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.049 0.951 35 H 0.019 0.981 36 H 0.068 0.932 37 H 0.352 0.648 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 3.482 -15.342 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 H 0.061 0.939 4 C -0.136 4.136 5 C -0.077 4.077 6 C -0.190 4.190 7 C -0.187 4.187 8 C -0.079 4.079 9 N -0.238 5.238 10 C -0.085 4.085 11 C 0.182 3.818 12 H 0.033 0.967 13 O -0.373 6.373 14 C -0.628 4.628 15 H 0.076 0.924 16 C -0.178 4.178 17 N -0.536 5.536 18 Si 0.787 3.213 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.204 1.204 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.196 0.804 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.479 2.532 -15.233 15.513 hybrid contribution 0.369 1.394 1.397 2.008 sum -1.110 3.925 -13.836 14.425 Atomic orbital electron populations 1.21621 0.93050 1.02196 1.01658 1.22919 0.96774 0.95364 0.90727 0.93942 1.22633 0.94321 1.00044 0.96566 1.21455 0.96515 0.97268 0.92416 1.21857 0.97562 0.97715 1.01846 1.21794 1.01089 0.94080 1.01738 1.22908 0.89739 0.99317 0.95936 1.64719 1.18892 1.37568 1.02594 1.22805 0.99974 0.94165 0.91593 1.19120 0.88171 0.84479 0.90033 0.96727 1.86501 1.21167 1.36267 1.93383 1.22088 1.48197 0.96853 0.95682 0.92433 1.25932 0.93460 0.96009 1.02361 1.70241 1.43417 1.13607 1.26367 0.85473 0.77853 0.79121 0.78892 1.18740 1.20236 1.20417 0.93905 0.90123 0.92451 0.88949 0.90519 0.92873 0.90173 0.93542 0.93389 0.90446 0.93026 0.95776 0.93243 0.96236 0.91392 0.80404 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.48 71.98 0.68 -2.59 16 2 C 0.05 1.46 2.92 45.26 0.13 1.59 16 3 H 0.04 1.26 8.02 -2.39 -0.02 1.24 16 4 C -0.10 -2.33 5.60 31.80 0.18 -2.15 16 5 C -0.08 -2.00 0.97 -51.30 -0.05 -2.05 16 6 C -0.13 -2.94 8.21 71.98 0.59 -2.35 16 7 C -0.13 -3.05 8.22 71.99 0.59 -2.45 16 8 C 0.05 1.81 4.88 86.44 0.42 2.23 16 9 N -0.51 -19.54 4.90 -858.22 -4.20 -23.74 16 10 C 0.04 1.89 4.27 86.30 0.37 2.26 16 11 C 0.24 12.92 2.79 29.85 0.08 13.01 16 12 H 0.01 0.90 7.29 -2.39 -0.02 0.88 16 13 O -0.57 -31.53 12.64 -148.98 -1.88 -33.41 16 14 C -0.59 -33.58 8.76 25.60 0.22 -33.35 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 16 C 0.02 1.42 5.40 84.66 0.46 1.88 16 17 N -0.90 -55.29 12.84 21.45 0.28 -55.01 16 18 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H 0.04 1.18 7.39 -2.39 -0.02 1.17 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.52 8.13 -2.38 -0.02 1.50 16 25 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 26 H 0.08 1.80 7.76 -2.39 -0.02 1.78 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.02 0.95 7.18 -2.39 -0.02 0.93 16 34 H 0.05 2.07 7.67 -2.39 -0.02 2.05 16 35 H 0.02 0.86 7.94 -2.38 -0.02 0.84 16 36 H 0.07 2.86 7.32 -2.39 -0.02 2.84 16 37 H 0.35 17.41 9.04 -74.05 -0.67 16.74 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -66.40 301.35 0.24 -66.17 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.34 Total: 23.71 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 3.68 Total: -23.98 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.93 Total: -78.75 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.88 Total: -33.41 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -66.40 0.24 -66.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930721788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.295 kcal (2) G-P(sol) polarization free energy of solvation -66.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds