Wall clock time and date at job start Sun Mar 29 2020 22:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.59601 * 2 1 4 4 C 1.54934 * 110.66705 * 123.00721 * 2 1 3 5 5 C 1.54598 * 102.92147 * 155.84819 * 4 2 1 6 6 C 1.53003 * 110.31021 * 96.95721 * 5 4 2 7 7 C 1.53003 * 110.30873 * 219.02794 * 5 4 2 8 8 C 1.53997 * 105.13815 * 338.03987 * 5 4 2 9 9 N 1.47897 * 107.05773 * 358.77831 * 8 5 4 10 10 C 1.46896 * 111.00175 * 145.84644 * 9 8 5 11 11 C 1.53000 * 109.47402 * 52.60035 * 10 9 8 12 12 H 1.08998 * 109.46794 * 59.99894 * 11 10 9 13 13 O 1.42905 * 109.46804 * 299.99981 * 11 10 9 14 14 C 1.50697 * 109.47324 * 180.02562 * 11 10 9 15 15 H 1.08004 * 120.00098 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00242 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99847 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00198 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47146 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47080 * 120.00166 * 18 16 14 21 21 H 1.48496 * 109.46967 * 240.00396 * 18 16 14 22 22 H 1.09001 * 109.47002 * 296.99222 * 1 2 3 23 23 H 1.08993 * 109.46955 * 56.99659 * 1 2 3 24 24 H 1.09000 * 109.47050 * 176.99488 * 1 2 3 25 25 H 1.09005 * 110.72290 * 274.20459 * 4 2 1 26 26 H 1.08994 * 110.72856 * 37.48861 * 4 2 1 27 27 H 1.08999 * 109.47042 * 59.99657 * 6 5 4 28 28 H 1.08998 * 109.47033 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46661 * 299.99994 * 6 5 4 30 30 H 1.08997 * 109.47089 * 59.99562 * 7 5 4 31 31 H 1.08994 * 109.46911 * 180.02562 * 7 5 4 32 32 H 1.09000 * 109.46698 * 299.99574 * 7 5 4 33 33 H 1.09002 * 109.91379 * 118.12817 * 8 5 4 34 34 H 1.08996 * 109.91605 * 239.42051 * 8 5 4 35 35 H 1.09003 * 109.47153 * 172.60216 * 10 9 8 36 36 H 1.09003 * 109.46855 * 292.59978 * 10 9 8 37 37 H 0.96689 * 114.00275 * 300.00286 * 13 11 10 38 38 H 0.96995 * 120.00020 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 6 2.0769 -0.7897 1.2157 5 6 3.4853 -1.2186 0.7441 6 6 4.5411 -0.2438 1.2697 7 6 3.7939 -2.6403 1.2178 8 6 3.4279 -1.1660 -0.7939 9 7 2.0543 -0.7607 -1.1631 10 6 2.0580 0.0681 -2.3759 11 6 2.8268 -0.6535 -3.4845 12 1 2.3458 -1.6079 -3.6982 13 8 4.1720 -0.8824 -3.0599 14 6 2.8312 0.1971 -4.7285 15 1 2.3355 1.1567 -4.7283 16 6 3.4688 -0.2491 -5.8665 17 7 4.0729 -1.4173 -5.8666 18 14 3.4748 0.8056 -7.4083 19 1 2.7307 2.0645 -7.1498 20 1 4.8754 1.1260 -7.7835 21 1 2.8223 0.0645 -8.5175 22 1 -0.3633 0.4664 0.9157 23 1 -0.3633 0.5597 -0.8618 24 1 -0.3633 -1.0263 -0.0539 25 1 2.1431 -0.1480 2.0943 26 1 1.4562 -1.6621 1.4198 27 1 4.5177 -0.2358 2.3594 28 1 5.5276 -0.5584 0.9293 29 1 4.3298 0.7576 0.8945 30 1 3.0559 -3.3287 0.8061 31 1 4.7889 -2.9283 0.8787 32 1 3.7569 -2.6765 2.3066 33 1 4.1440 -0.4341 -1.1674 34 1 3.6486 -2.1500 -1.2075 35 1 1.0319 0.2428 -2.6997 36 1 2.5390 1.0227 -2.1621 37 1 4.6616 -0.0749 -2.8520 38 1 4.5212 -1.7314 -6.6674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930721789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:20 Heat of formation + Delta-G solvation = -57.778264 kcal Electronic energy + Delta-G solvation = -16957.028286 eV Core-core repulsion = 14412.953626 eV Total energy + Delta-G solvation = -2544.074660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38812 -35.92294 -33.71426 -32.17384 -30.98042 -28.31070 -27.12575 -26.47371 -24.98702 -23.34315 -20.49127 -19.80490 -18.68882 -16.91925 -15.45836 -14.76171 -14.60365 -14.30116 -13.88080 -13.70092 -13.41667 -13.13146 -12.94795 -12.50746 -12.34867 -11.92934 -11.53263 -11.38494 -11.24947 -11.17094 -11.02593 -10.93519 -10.68834 -10.46449 -10.27664 -10.16047 -10.02031 -9.78241 -8.94165 -8.56426 -7.94673 -7.62693 -5.99177 -4.17186 3.27162 3.35423 3.38758 4.37445 4.63525 4.87681 4.96334 5.18294 5.27643 5.43492 5.54983 5.65154 5.76521 5.81409 5.86781 5.96331 6.01482 6.09932 6.11537 6.17067 6.23471 6.24807 6.37471 6.39080 6.47439 6.51098 6.61219 6.76265 6.86260 7.02851 7.64011 7.69157 7.78947 7.97379 8.23342 8.86108 9.36654 9.59083 11.04841 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037566 B = 0.007258 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.170884 B = 3856.988631 C = 4271.119698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.043 0.957 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.134 4.134 7 C -0.131 4.131 8 C 0.063 3.937 9 N -0.512 5.512 10 C 0.024 3.976 11 C 0.231 3.769 12 H 0.062 0.938 13 O -0.559 6.559 14 C -0.571 4.571 15 H 0.055 0.945 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.020 0.980 37 H 0.340 0.660 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 1.863 13.295 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 H 0.061 0.939 4 C -0.146 4.146 5 C -0.090 4.090 6 C -0.192 4.192 7 C -0.188 4.188 8 C -0.064 4.064 9 N -0.236 5.236 10 C -0.104 4.104 11 C 0.174 3.826 12 H 0.080 0.920 13 O -0.362 6.362 14 C -0.610 4.610 15 H 0.073 0.927 16 C -0.127 4.127 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.184 0.816 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.400 0.642 12.965 13.200 hybrid contribution 0.599 1.967 -0.806 2.209 sum -1.801 2.609 12.159 12.565 Atomic orbital electron populations 1.21646 0.94638 1.02192 1.00620 1.22751 0.95500 0.95491 0.91499 0.93937 1.22626 0.95696 0.99625 0.96619 1.21625 0.94651 0.95412 0.97294 1.21866 0.98647 0.98748 0.99924 1.21799 1.01606 0.95636 0.99808 1.23126 0.90139 1.02757 0.90404 1.64792 1.19536 1.37085 1.02190 1.23107 1.01302 0.94299 0.91682 1.19377 0.79376 0.95915 0.87951 0.91986 1.86694 1.27269 1.33876 1.88343 1.21665 1.37090 1.05013 0.97215 0.92724 1.25027 0.94489 0.94700 0.98439 1.70090 1.32965 1.18238 1.28059 0.86630 0.77755 0.80682 0.83387 1.19773 1.20935 1.20861 0.93145 0.92896 0.92003 0.92079 0.91098 0.93254 0.92530 0.93091 0.92367 0.92742 0.93519 0.92262 0.89896 0.91445 0.96173 0.81611 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.47 37.16 0.35 -1.50 16 2 C 0.06 0.87 2.91 -65.78 -0.19 0.68 16 3 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 4 C -0.11 -1.47 5.60 -24.87 -0.14 -1.60 16 5 C -0.09 -1.28 0.97 -153.15 -0.15 -1.42 16 6 C -0.13 -1.71 8.21 37.16 0.30 -1.41 16 7 C -0.13 -1.71 8.22 37.16 0.31 -1.41 16 8 C 0.06 1.14 4.18 -2.75 -0.01 1.13 16 9 N -0.51 -9.64 5.09 -222.63 -1.13 -10.77 16 10 C 0.02 0.52 4.71 -3.83 -0.02 0.50 16 11 C 0.23 5.90 2.94 -27.88 -0.08 5.82 16 12 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 13 O -0.56 -13.96 9.25 -35.23 -0.33 -14.29 16 14 C -0.57 -15.80 8.76 -34.44 -0.30 -16.10 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -25.45 12.84 55.43 0.71 -24.74 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 26 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.12 5.01 -51.93 -0.26 0.86 16 34 H 0.08 1.70 7.22 -51.93 -0.37 1.33 16 35 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 36 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 37 H 0.34 7.73 8.06 45.56 0.37 8.09 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -29.31 296.14 -7.39 -36.70 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.06 Total: 5.54 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.03 Total: -13.17 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.42 Total: -35.51 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.33 Total: -14.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.31 -7.39 -36.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930721789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.075 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds