Wall clock time and date at job start Sun Mar 29 2020 22:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.59601 * 2 1 4 4 C 1.54934 * 110.66705 * 123.00721 * 2 1 3 5 5 C 1.54598 * 102.92147 * 155.84819 * 4 2 1 6 6 C 1.53003 * 110.31021 * 96.95721 * 5 4 2 7 7 C 1.53003 * 110.30873 * 219.02794 * 5 4 2 8 8 C 1.53997 * 105.13815 * 338.03987 * 5 4 2 9 9 N 1.47897 * 107.05773 * 358.77831 * 8 5 4 10 10 C 1.46896 * 111.00175 * 145.84644 * 9 8 5 11 11 C 1.53000 * 109.47402 * 52.60035 * 10 9 8 12 12 H 1.08998 * 109.46794 * 59.99894 * 11 10 9 13 13 O 1.42905 * 109.46804 * 299.99981 * 11 10 9 14 14 C 1.50697 * 109.47324 * 180.02562 * 11 10 9 15 15 H 1.08004 * 120.00098 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00242 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99847 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00198 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47146 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47080 * 120.00166 * 18 16 14 21 21 H 1.48496 * 109.46967 * 240.00396 * 18 16 14 22 22 H 1.09001 * 109.47002 * 296.99222 * 1 2 3 23 23 H 1.08993 * 109.46955 * 56.99659 * 1 2 3 24 24 H 1.09000 * 109.47050 * 176.99488 * 1 2 3 25 25 H 1.09005 * 110.72290 * 274.20459 * 4 2 1 26 26 H 1.08994 * 110.72856 * 37.48861 * 4 2 1 27 27 H 1.08999 * 109.47042 * 59.99657 * 6 5 4 28 28 H 1.08998 * 109.47033 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46661 * 299.99994 * 6 5 4 30 30 H 1.08997 * 109.47089 * 59.99562 * 7 5 4 31 31 H 1.08994 * 109.46911 * 180.02562 * 7 5 4 32 32 H 1.09000 * 109.46698 * 299.99574 * 7 5 4 33 33 H 1.09002 * 109.91379 * 118.12817 * 8 5 4 34 34 H 1.08996 * 109.91605 * 239.42051 * 8 5 4 35 35 H 1.09003 * 109.47153 * 172.60216 * 10 9 8 36 36 H 1.09003 * 109.46855 * 292.59978 * 10 9 8 37 37 H 0.96689 * 114.00275 * 300.00286 * 13 11 10 38 38 H 0.96995 * 120.00020 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 6 2.0769 -0.7897 1.2157 5 6 3.4853 -1.2186 0.7441 6 6 4.5411 -0.2438 1.2697 7 6 3.7939 -2.6403 1.2178 8 6 3.4279 -1.1660 -0.7939 9 7 2.0543 -0.7607 -1.1631 10 6 2.0580 0.0681 -2.3759 11 6 2.8268 -0.6535 -3.4845 12 1 2.3458 -1.6079 -3.6982 13 8 4.1720 -0.8824 -3.0599 14 6 2.8312 0.1971 -4.7285 15 1 2.3355 1.1567 -4.7283 16 6 3.4688 -0.2491 -5.8665 17 7 4.0729 -1.4173 -5.8666 18 14 3.4748 0.8056 -7.4083 19 1 2.7307 2.0645 -7.1498 20 1 4.8754 1.1260 -7.7835 21 1 2.8223 0.0645 -8.5175 22 1 -0.3633 0.4664 0.9157 23 1 -0.3633 0.5597 -0.8618 24 1 -0.3633 -1.0263 -0.0539 25 1 2.1431 -0.1480 2.0943 26 1 1.4562 -1.6621 1.4198 27 1 4.5177 -0.2358 2.3594 28 1 5.5276 -0.5584 0.9293 29 1 4.3298 0.7576 0.8945 30 1 3.0559 -3.3287 0.8061 31 1 4.7889 -2.9283 0.8787 32 1 3.7569 -2.6765 2.3066 33 1 4.1440 -0.4341 -1.1674 34 1 3.6486 -2.1500 -1.2075 35 1 1.0319 0.2428 -2.6997 36 1 2.5390 1.0227 -2.1621 37 1 4.6616 -0.0749 -2.8520 38 1 4.5212 -1.7314 -6.6674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930721789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:19 Heat of formation + Delta-G solvation = -78.278945 kcal Electronic energy + Delta-G solvation = -16957.917262 eV Core-core repulsion = 14412.953626 eV Total energy + Delta-G solvation = -2544.963636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76258 -37.76883 -35.07506 -34.31592 -32.42249 -30.11639 -28.15458 -27.76107 -26.64659 -24.98882 -22.33049 -21.15391 -19.91732 -18.98398 -16.83088 -16.67974 -16.40602 -16.14313 -15.35229 -15.01254 -14.79215 -14.54960 -14.33473 -13.89078 -13.74674 -13.20518 -13.15537 -12.90088 -12.83755 -12.64315 -12.58795 -12.30114 -12.27429 -12.10046 -11.77269 -11.43227 -11.26107 -11.18361 -11.02113 -10.73437 -9.87512 -9.15968 -8.14855 -6.41243 1.38104 1.39252 1.51569 2.37034 3.10368 3.22125 3.68717 3.77974 4.01796 4.20258 4.30138 4.39721 4.44721 4.47040 4.52909 4.73155 4.82813 4.84833 4.90379 4.92636 4.96158 5.05562 5.09297 5.16538 5.19269 5.22285 5.38253 5.42781 5.53457 5.57819 5.61721 5.72291 6.00020 6.25857 6.33042 6.71742 7.29919 7.48920 8.89482 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037566 B = 0.007258 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.170884 B = 3856.988631 C = 4271.119698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.052 3.948 3 H 0.043 0.957 4 C -0.099 4.099 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.128 4.128 8 C 0.066 3.934 9 N -0.526 5.526 10 C 0.044 3.956 11 C 0.235 3.765 12 H 0.018 0.982 13 O -0.566 6.566 14 C -0.587 4.587 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.898 5.898 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.279 1.279 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.349 0.651 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 3.204 14.819 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.056 4.056 3 H 0.061 0.939 4 C -0.137 4.137 5 C -0.087 4.087 6 C -0.187 4.187 7 C -0.185 4.185 8 C -0.061 4.061 9 N -0.251 5.251 10 C -0.085 4.085 11 C 0.178 3.822 12 H 0.036 0.964 13 O -0.370 6.370 14 C -0.626 4.626 15 H 0.076 0.924 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.786 3.214 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.194 0.806 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.740 1.994 14.505 14.895 hybrid contribution 0.701 1.508 -1.249 2.080 sum -2.039 3.502 13.256 13.861 Atomic orbital electron populations 1.21636 0.93288 1.02026 1.01754 1.22906 0.96578 0.95354 0.90764 0.93917 1.22622 0.94639 0.99906 0.96495 1.21603 0.96102 0.96854 0.94113 1.21826 0.97718 0.97744 1.01438 1.21765 1.00956 0.94434 1.01373 1.22959 0.89430 1.00246 0.93504 1.64729 1.20195 1.37461 1.02716 1.22697 1.00126 0.93962 0.91684 1.19120 0.79849 0.93881 0.89374 0.96436 1.86655 1.27388 1.34572 1.88416 1.22035 1.36932 1.05258 0.98326 0.92434 1.25905 0.93974 0.95901 1.01873 1.70229 1.34018 1.20111 1.29138 0.85485 0.77954 0.79007 0.78961 1.18794 1.20350 1.20445 0.90114 0.93913 0.92571 0.89253 0.90746 0.90674 0.92861 0.93584 0.93618 0.93163 0.90852 0.93609 0.93457 0.91774 0.95900 0.80583 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.47 71.98 0.68 -2.65 16 2 C 0.05 1.53 2.91 45.26 0.13 1.66 16 3 H 0.04 1.28 7.86 -2.39 -0.02 1.26 16 4 C -0.10 -2.40 5.60 31.80 0.18 -2.23 16 5 C -0.09 -2.32 0.97 -51.30 -0.05 -2.37 16 6 C -0.13 -2.99 8.21 71.98 0.59 -2.40 16 7 C -0.13 -3.15 8.22 71.98 0.59 -2.55 16 8 C 0.07 2.44 4.18 86.45 0.36 2.80 16 9 N -0.53 -19.97 5.09 -858.26 -4.37 -24.34 16 10 C 0.04 1.90 4.71 86.30 0.41 2.31 16 11 C 0.24 12.47 2.94 29.85 0.09 12.55 16 12 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 13 O -0.57 -29.43 9.25 -148.98 -1.38 -30.81 16 14 C -0.59 -33.02 8.76 25.60 0.22 -32.80 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.03 1.48 5.40 84.65 0.46 1.93 16 17 N -0.90 -54.54 12.84 21.45 0.28 -54.26 16 18 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.17 7.87 -2.39 -0.02 1.15 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.09 1.73 7.85 -2.38 -0.02 1.71 16 26 H 0.07 1.78 7.78 -2.39 -0.02 1.76 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.78 5.01 -2.39 -0.01 1.77 16 34 H 0.05 2.04 7.22 -2.39 -0.02 2.03 16 35 H 0.06 2.78 7.88 -2.39 -0.02 2.76 16 36 H 0.02 0.97 7.90 -2.39 -0.02 0.95 16 37 H 0.35 16.39 8.06 -74.06 -0.60 15.80 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -64.06 296.14 0.63 -63.43 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.41 Total: 23.76 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.66 Total: -23.75 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -4.09 Total: -78.60 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.38 Total: -30.81 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -64.06 0.63 -63.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930721789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.847 kcal (2) G-P(sol) polarization free energy of solvation -64.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds