Wall clock time and date at job start Sun Mar 29 2020 21:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 H 1.09008 * 109.47080 * 304.02979 * 3 2 1 5 5 C 1.52995 * 109.47136 * 184.02539 * 3 2 1 6 6 O 1.42899 * 109.47276 * 305.00033 * 5 3 2 7 7 N 1.46901 * 109.46884 * 64.02419 * 3 2 1 8 8 C 1.46845 * 110.99967 * 187.69262 * 7 3 2 9 9 C 1.53034 * 109.52645 * 174.16306 * 8 7 3 10 10 C 1.53122 * 109.27968 * 59.17831 * 9 8 7 11 11 C 1.53120 * 109.15934 * 302.34975 * 10 9 8 12 12 H 1.08999 * 109.53583 * 297.69385 * 11 10 9 13 13 C 1.50700 * 109.50129 * 177.59197 * 11 10 9 14 14 H 1.08004 * 119.99795 * 240.19253 * 13 11 10 15 15 C 1.37881 * 120.00016 * 60.19783 * 13 11 10 16 16 N 1.31515 * 119.99964 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99941 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47093 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47187 * 300.00302 * 17 15 13 20 20 H 1.48507 * 109.47079 * 60.00231 * 17 15 13 21 21 C 1.46845 * 110.99689 * 63.48646 * 7 3 2 22 22 H 1.09002 * 109.46978 * 64.47518 * 1 2 3 23 23 H 1.08996 * 109.46854 * 184.47303 * 1 2 3 24 24 H 1.08999 * 109.46900 * 304.47589 * 1 2 3 25 25 H 1.09001 * 109.47103 * 240.00618 * 2 1 3 26 26 H 1.09000 * 109.47167 * 120.00025 * 2 1 3 27 27 H 1.08999 * 109.47186 * 65.00149 * 5 3 2 28 28 H 1.09006 * 109.47414 * 184.99873 * 5 3 2 29 29 H 0.96695 * 114.00028 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.46326 * 294.17917 * 8 7 3 31 31 H 1.09007 * 109.46170 * 54.14691 * 8 7 3 32 32 H 1.08993 * 109.50858 * 179.12063 * 9 8 7 33 33 H 1.09002 * 109.50193 * 299.20102 * 9 8 7 34 34 H 1.08998 * 109.52446 * 182.44090 * 10 9 8 35 35 H 1.09001 * 109.51900 * 62.24837 * 10 9 8 36 36 H 0.96996 * 120.00143 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46674 * 65.82333 * 21 7 3 38 38 H 1.08993 * 109.45677 * 305.84545 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6189 1.9768 -0.8517 5 6 3.5666 1.4437 -0.1013 6 8 4.1144 0.6457 0.9500 7 7 1.6313 2.1063 1.2451 8 6 1.9433 3.5406 1.2037 9 6 1.3753 4.2239 2.4497 10 6 1.9871 3.5853 3.6997 11 6 1.6891 2.0834 3.6939 12 1 0.6114 1.9255 3.7349 13 6 2.3382 1.4371 4.8906 14 1 3.0759 0.6607 4.7511 15 6 1.9903 1.8369 6.1634 16 7 1.0923 2.7827 6.3332 17 14 2.7944 1.0353 7.6467 18 1 2.2520 1.6390 8.8903 19 1 2.5084 -0.4219 7.6377 20 1 4.2625 1.2520 7.5914 21 6 2.2481 1.4622 2.4118 22 1 -0.3633 0.4428 -0.9274 23 1 -0.3633 -1.0245 0.0801 24 1 -0.3633 0.5817 0.8472 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8672 1.0316 -1.0645 28 1 3.9360 2.4654 -0.0120 29 1 5.0803 0.6015 0.9478 30 1 3.0245 3.6765 1.1761 31 1 1.4989 3.9834 0.3122 32 1 1.6205 5.2856 2.4263 33 1 0.2924 4.1008 2.4704 34 1 1.5530 4.0394 4.5904 35 1 3.0657 3.7426 3.6983 36 1 0.8478 3.0642 7.2286 37 1 3.3279 1.6079 2.3785 38 1 2.0249 0.3955 2.3978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:06 Heat of formation + Delta-G solvation = -57.649055 kcal Electronic energy + Delta-G solvation = -17224.312853 eV Core-core repulsion = 14680.243796 eV Total energy + Delta-G solvation = -2544.069057 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.11757 -36.14333 -34.32849 -32.65920 -30.52069 -29.72545 -27.75242 -24.84454 -23.48494 -22.66638 -21.14050 -19.63526 -18.31453 -17.23606 -16.23382 -15.37685 -14.76276 -14.45624 -14.08496 -14.00411 -13.25324 -12.89200 -12.54368 -12.30116 -12.10699 -11.87704 -11.74539 -11.47662 -10.88883 -10.87638 -10.66660 -10.59913 -10.50295 -10.31133 -10.00525 -9.77290 -9.49981 -9.21255 -8.81857 -8.53986 -8.18803 -7.33103 -5.86574 -3.91284 3.38408 3.42603 3.45565 4.40642 4.52722 4.77054 5.13083 5.28226 5.43047 5.49639 5.56753 5.68486 5.82177 5.88872 5.93134 6.07607 6.16249 6.27316 6.32486 6.41341 6.65618 6.72912 6.77515 6.83805 6.88373 7.01608 7.30997 7.35683 7.54911 7.83557 7.86627 7.89910 8.03498 8.24966 8.32414 8.64616 9.13615 9.72011 11.19564 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.008570 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.656874 B = 3266.416437 C = 3506.009335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.084 3.916 4 H 0.081 0.919 5 C 0.043 3.957 6 O -0.548 6.548 7 N -0.528 5.528 8 C 0.061 3.939 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.051 3.949 12 H 0.028 0.972 13 C -0.507 4.507 14 H 0.052 0.948 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.289 1.289 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.067 3.933 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.364 0.636 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.027 0.973 36 H 0.258 0.742 37 H 0.050 0.950 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -0.951 -12.630 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.025 4.025 4 H 0.099 0.901 5 C -0.037 4.037 6 O -0.352 6.352 7 N -0.252 5.252 8 C -0.067 4.067 9 C -0.154 4.154 10 C -0.147 4.147 11 C 0.033 3.967 12 H 0.046 0.954 13 C -0.546 4.546 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.215 1.215 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.059 4.059 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.210 0.790 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.783 -0.972 -12.288 12.455 hybrid contribution 1.981 -0.145 0.515 2.052 sum 3.764 -1.118 -11.773 12.410 Atomic orbital electron populations 1.21671 0.95591 1.00743 1.02126 1.21464 0.96240 0.95195 1.01866 1.21882 0.90013 0.96362 0.94251 0.90144 1.22963 0.97031 0.94032 0.89627 1.86887 1.24504 1.72621 1.51215 1.62172 1.59033 1.01880 1.02066 1.22029 0.97243 0.89066 0.98329 1.21661 1.00793 0.97145 0.95818 1.21634 0.97598 0.99274 0.96202 1.18716 0.96666 0.91196 0.90173 0.95405 1.21148 1.22888 1.19823 0.90713 0.92932 1.24941 0.95160 0.95185 0.98718 1.69889 1.32033 1.29379 1.21753 0.86727 0.79607 0.79687 0.82323 1.21450 1.20375 1.20501 1.22506 0.97085 0.97438 0.88832 0.93959 0.93857 0.90818 0.93098 0.90508 0.94494 0.94069 0.78993 0.96085 0.92929 0.93847 0.92230 0.89395 0.95408 0.93199 0.93196 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.85 37.16 0.37 -1.74 16 2 C -0.11 -1.65 5.00 -26.73 -0.13 -1.79 16 3 C 0.08 1.30 2.31 -67.71 -0.16 1.14 16 4 H 0.08 1.12 8.03 -51.92 -0.42 0.70 16 5 C 0.04 0.60 6.34 37.16 0.24 0.84 16 6 O -0.55 -8.39 9.28 -35.23 -0.33 -8.72 16 7 N -0.53 -9.92 3.96 -226.69 -0.90 -10.81 16 8 C 0.06 1.10 5.09 -3.84 -0.02 1.08 16 9 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 10 C -0.11 -2.66 5.03 -26.61 -0.13 -2.80 16 11 C 0.05 1.33 2.26 -91.69 -0.21 1.12 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.51 -14.35 8.56 -34.44 -0.29 -14.64 16 14 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -26.10 11.36 55.43 0.63 -25.47 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.07 1.49 3.18 -3.83 -0.01 1.47 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.26 7.60 -51.93 -0.39 0.87 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.34 5.74 -51.93 -0.30 1.04 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.58 6.52 -51.93 -0.34 0.24 16 29 H 0.36 4.02 9.12 45.56 0.42 4.43 16 30 H 0.02 0.38 6.70 -51.93 -0.35 0.03 16 31 H 0.05 0.83 8.04 -51.92 -0.42 0.41 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.05 1.13 5.61 -51.93 -0.29 0.84 16 38 H 0.06 1.36 6.03 -51.93 -0.31 1.05 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -29.87 285.22 -7.58 -37.45 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.65 Total: 2.63 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.61 Total: -16.19 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.27 Total: -36.28 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.33 Total: -8.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.87 -7.58 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.199 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds