Wall clock time and date at job start Sun Mar 29 2020 21:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 H 1.09008 * 109.47080 * 304.02979 * 3 2 1 5 5 C 1.52995 * 109.47136 * 184.02539 * 3 2 1 6 6 O 1.42899 * 109.47276 * 305.00033 * 5 3 2 7 7 N 1.46901 * 109.46884 * 64.02419 * 3 2 1 8 8 C 1.46845 * 110.99967 * 187.69262 * 7 3 2 9 9 C 1.53034 * 109.52645 * 174.16306 * 8 7 3 10 10 C 1.53122 * 109.27968 * 59.17831 * 9 8 7 11 11 C 1.53120 * 109.15934 * 302.34975 * 10 9 8 12 12 H 1.08999 * 109.53583 * 297.69385 * 11 10 9 13 13 C 1.50700 * 109.50129 * 177.59197 * 11 10 9 14 14 H 1.08004 * 119.99795 * 240.19253 * 13 11 10 15 15 C 1.37881 * 120.00016 * 60.19783 * 13 11 10 16 16 N 1.31515 * 119.99964 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99941 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47093 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47187 * 300.00302 * 17 15 13 20 20 H 1.48507 * 109.47079 * 60.00231 * 17 15 13 21 21 C 1.46845 * 110.99689 * 63.48646 * 7 3 2 22 22 H 1.09002 * 109.46978 * 64.47518 * 1 2 3 23 23 H 1.08996 * 109.46854 * 184.47303 * 1 2 3 24 24 H 1.08999 * 109.46900 * 304.47589 * 1 2 3 25 25 H 1.09001 * 109.47103 * 240.00618 * 2 1 3 26 26 H 1.09000 * 109.47167 * 120.00025 * 2 1 3 27 27 H 1.08999 * 109.47186 * 65.00149 * 5 3 2 28 28 H 1.09006 * 109.47414 * 184.99873 * 5 3 2 29 29 H 0.96695 * 114.00028 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.46326 * 294.17917 * 8 7 3 31 31 H 1.09007 * 109.46170 * 54.14691 * 8 7 3 32 32 H 1.08993 * 109.50858 * 179.12063 * 9 8 7 33 33 H 1.09002 * 109.50193 * 299.20102 * 9 8 7 34 34 H 1.08998 * 109.52446 * 182.44090 * 10 9 8 35 35 H 1.09001 * 109.51900 * 62.24837 * 10 9 8 36 36 H 0.96996 * 120.00143 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46674 * 65.82333 * 21 7 3 38 38 H 1.08993 * 109.45677 * 305.84545 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6189 1.9768 -0.8517 5 6 3.5666 1.4437 -0.1013 6 8 4.1144 0.6457 0.9500 7 7 1.6313 2.1063 1.2451 8 6 1.9433 3.5406 1.2037 9 6 1.3753 4.2239 2.4497 10 6 1.9871 3.5853 3.6997 11 6 1.6891 2.0834 3.6939 12 1 0.6114 1.9255 3.7349 13 6 2.3382 1.4371 4.8906 14 1 3.0759 0.6607 4.7511 15 6 1.9903 1.8369 6.1634 16 7 1.0923 2.7827 6.3332 17 14 2.7944 1.0353 7.6467 18 1 2.2520 1.6390 8.8903 19 1 2.5084 -0.4219 7.6377 20 1 4.2625 1.2520 7.5914 21 6 2.2481 1.4622 2.4118 22 1 -0.3633 0.4428 -0.9274 23 1 -0.3633 -1.0245 0.0801 24 1 -0.3633 0.5817 0.8472 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8672 1.0316 -1.0645 28 1 3.9360 2.4654 -0.0120 29 1 5.0803 0.6015 0.9478 30 1 3.0245 3.6765 1.1761 31 1 1.4989 3.9834 0.3122 32 1 1.6205 5.2856 2.4263 33 1 0.2924 4.1008 2.4704 34 1 1.5530 4.0394 4.5904 35 1 3.0657 3.7426 3.6983 36 1 0.8478 3.0642 7.2286 37 1 3.3279 1.6079 2.3785 38 1 2.0249 0.3955 2.3978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930923354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:06 Heat of formation + Delta-G solvation = -78.537872 kcal Electronic energy + Delta-G solvation = -17225.218660 eV Core-core repulsion = 14680.243796 eV Total energy + Delta-G solvation = -2544.974864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54627 -37.57621 -35.80205 -34.48732 -32.12578 -31.53576 -29.04531 -26.87765 -24.87161 -24.13094 -22.87571 -21.09406 -19.97701 -18.56142 -18.12282 -16.97185 -16.36035 -16.04090 -15.54466 -15.33930 -14.71608 -14.68015 -14.32960 -13.83203 -13.56674 -13.29512 -13.13884 -12.99947 -12.81480 -12.57231 -12.47831 -12.07857 -11.95541 -11.78814 -11.53996 -11.49814 -11.21529 -10.81529 -10.67197 -10.45821 -10.30794 -8.80409 -8.04639 -6.18052 1.40341 1.42381 1.49968 2.44462 3.16733 3.21413 3.59501 3.96972 4.13438 4.25768 4.35081 4.44013 4.51932 4.53824 4.62587 4.75512 4.80050 4.89544 4.94766 5.01403 5.07760 5.15681 5.20653 5.28564 5.36512 5.45398 5.54991 5.58789 5.64643 5.67192 6.04947 6.23705 6.31397 6.55671 6.60309 6.94660 6.96498 7.49086 8.99826 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.008570 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.656874 B = 3266.416437 C = 3506.009335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.079 3.921 4 H 0.107 0.893 5 C 0.045 3.955 6 O -0.575 6.575 7 N -0.540 5.540 8 C 0.066 3.934 9 C -0.111 4.111 10 C -0.101 4.101 11 C 0.048 3.952 12 H -0.016 1.016 13 C -0.530 4.530 14 H 0.047 0.953 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.953 3.047 18 H -0.283 1.283 19 H -0.273 1.273 20 H -0.271 1.271 21 C 0.093 3.907 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.382 0.618 30 H 0.026 0.974 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.259 0.741 37 H 0.047 0.953 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -0.964 -14.522 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.030 4.030 4 H 0.125 0.875 5 C -0.034 4.034 6 O -0.383 6.383 7 N -0.264 5.264 8 C -0.062 4.062 9 C -0.149 4.149 10 C -0.139 4.139 11 C 0.029 3.971 12 H 0.003 0.997 13 C -0.569 4.569 14 H 0.065 0.935 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.196 1.196 21 C -0.034 4.034 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.231 0.769 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.785 -0.988 -14.201 14.505 hybrid contribution 1.646 -0.156 1.076 1.972 sum 4.431 -1.145 -13.125 13.900 Atomic orbital electron populations 1.21616 0.95511 1.00829 1.01759 1.21435 0.96279 0.95155 1.01594 1.22073 0.91639 0.96299 0.92981 0.87493 1.22955 0.95610 0.94237 0.90626 1.86809 1.26316 1.72900 1.52256 1.62051 1.59360 1.02506 1.02484 1.22024 0.97660 0.88340 0.98194 1.21580 0.99761 0.98573 0.94949 1.21422 0.96959 0.98342 0.97198 1.18673 0.93874 0.92604 0.91913 0.99744 1.21498 1.23122 1.20065 0.92204 0.93484 1.25739 0.95693 0.95695 1.01578 1.70042 1.33017 1.30357 1.22311 0.85700 0.78923 0.78804 0.78738 1.20838 1.19823 1.19604 1.22016 0.96524 0.96196 0.88632 0.91734 0.93175 0.94104 0.90373 0.93641 0.91335 0.93886 0.76942 0.95550 0.89421 0.91391 0.93449 0.92830 0.96161 0.93198 0.93539 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.85 71.98 0.71 -3.19 16 2 C -0.11 -3.02 5.00 30.60 0.15 -2.86 16 3 C 0.08 2.20 2.31 44.91 0.10 2.31 16 4 H 0.11 2.48 8.03 -2.38 -0.02 2.46 16 5 C 0.04 1.10 6.34 71.98 0.46 1.56 16 6 O -0.58 -16.69 9.28 -148.98 -1.38 -18.07 16 7 N -0.54 -19.72 3.96 -871.10 -3.45 -23.16 16 8 C 0.07 2.20 5.09 86.32 0.44 2.64 16 9 C -0.11 -4.41 6.09 30.65 0.19 -4.22 16 10 C -0.10 -5.07 5.03 30.68 0.15 -4.92 16 11 C 0.05 2.60 2.26 -11.48 -0.03 2.58 16 12 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 13 C -0.53 -31.03 8.56 25.60 0.22 -30.81 16 14 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 15 C 0.01 0.65 5.30 84.66 0.45 1.10 16 16 N -0.92 -55.45 11.36 21.45 0.24 -55.21 16 17 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 C 0.09 4.18 3.18 86.33 0.27 4.46 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.04 1.40 7.60 -2.39 -0.02 1.38 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.58 5.74 -2.39 -0.01 1.56 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.05 6.52 -2.38 -0.02 1.03 16 29 H 0.38 7.74 9.12 -74.06 -0.68 7.07 16 30 H 0.03 0.88 6.70 -2.38 -0.02 0.86 16 31 H 0.09 2.39 8.04 -2.38 -0.02 2.38 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 3.04 6.16 -2.39 -0.01 3.02 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.05 2.12 5.61 -2.38 -0.01 2.11 16 38 H 0.04 1.96 6.03 -2.39 -0.01 1.94 16 Total: -1.00 -66.80 285.22 0.91 -65.88 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.35 Total: 14.45 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.12 Total: -31.36 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.20 Total: -78.37 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.38 Total: -18.07 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.80 0.91 -65.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.654 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds