Wall clock time and date at job start Sun Mar 29 2020 21:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 H 1.08996 * 109.46753 * 57.10132 * 3 2 1 5 5 C 1.53003 * 109.46888 * 177.10220 * 3 2 1 6 6 O 1.42898 * 109.47242 * 53.55160 * 5 3 2 7 7 N 1.46894 * 109.46784 * 297.10413 * 3 2 1 8 8 C 1.46853 * 111.00156 * 305.33509 * 7 3 2 9 9 C 1.53034 * 109.52400 * 174.16165 * 8 7 3 10 10 C 1.53124 * 109.31035 * 59.16542 * 9 8 7 11 11 C 1.53122 * 109.15710 * 302.40293 * 10 9 8 12 12 H 1.09004 * 109.50270 * 297.63579 * 11 10 9 13 13 C 1.50696 * 109.50353 * 177.55736 * 11 10 9 14 14 H 1.08004 * 119.99635 * 245.40897 * 13 11 10 15 15 C 1.37875 * 120.00222 * 65.40588 * 13 11 10 16 16 N 1.31511 * 120.00025 * 5.62725 * 15 13 11 17 17 Si 1.86801 * 120.00070 * 185.62628 * 15 13 11 18 18 H 1.48501 * 109.46812 * 85.00046 * 17 15 13 19 19 H 1.48498 * 109.47308 * 204.99512 * 17 15 13 20 20 H 1.48498 * 109.47437 * 325.00050 * 17 15 13 21 21 C 1.46848 * 110.99892 * 181.13398 * 7 3 2 22 22 H 1.08999 * 109.47077 * 65.04191 * 1 2 3 23 23 H 1.09008 * 109.47233 * 185.03776 * 1 2 3 24 24 H 1.08997 * 109.47705 * 305.03970 * 1 2 3 25 25 H 1.08996 * 109.47722 * 239.99948 * 2 1 3 26 26 H 1.08999 * 109.47224 * 119.99814 * 2 1 3 27 27 H 1.09004 * 109.46380 * 173.54609 * 5 3 2 28 28 H 1.08993 * 109.47180 * 293.54195 * 5 3 2 29 29 H 0.96696 * 113.99748 * 179.97438 * 6 5 3 30 30 H 1.09007 * 109.45678 * 54.14764 * 8 7 3 31 31 H 1.09000 * 109.46255 * 294.18310 * 8 7 3 32 32 H 1.08997 * 109.50536 * 179.12268 * 9 8 7 33 33 H 1.09001 * 109.50664 * 299.20515 * 9 8 7 34 34 H 1.09000 * 109.52040 * 62.26905 * 10 9 8 35 35 H 1.09002 * 109.52207 * 182.45605 * 10 9 8 36 36 H 0.97003 * 120.00245 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.45995 * 305.85231 * 21 7 3 38 38 H 1.08997 * 109.46692 * 65.82213 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6348 1.9711 0.8628 5 6 3.5682 1.4431 0.0729 6 8 4.0954 0.6247 -0.9732 7 7 1.6082 2.1144 -1.2329 8 6 2.0295 1.3586 -2.4194 9 6 1.4405 2.0067 -3.6744 10 6 1.9253 3.4560 -3.7708 11 6 1.5166 4.2081 -2.5012 12 1 0.4295 4.2274 -2.4237 13 6 2.0418 5.6193 -2.5614 14 1 2.7900 5.9476 -1.8551 15 6 1.5673 6.4914 -3.5181 16 7 0.5790 6.1286 -4.3062 17 14 2.3281 8.1883 -3.6948 18 1 3.5256 8.1052 -4.5689 19 1 1.3373 9.1145 -4.2995 20 1 2.7262 8.6941 -2.3566 21 6 2.1033 3.4961 -1.2802 22 1 -0.3633 0.4336 -0.9317 23 1 -0.3634 -1.0238 0.0902 24 1 -0.3634 0.5900 0.8413 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9370 2.4624 -0.0423 28 1 3.8861 1.0487 1.0380 29 1 5.0611 0.5790 -0.9880 30 1 1.6742 0.3311 -2.3404 31 1 3.1175 1.3625 -2.4851 32 1 1.7661 1.4547 -4.5560 33 1 0.3522 1.9902 -3.6160 34 1 3.0107 3.4712 -3.8691 35 1 1.4732 3.9342 -4.6398 36 1 0.2448 6.7422 -4.9791 37 1 1.8017 4.0212 -0.3739 38 1 3.1910 3.4900 -1.3513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:08 Heat of formation + Delta-G solvation = -60.329421 kcal Electronic energy + Delta-G solvation = -17110.392502 eV Core-core repulsion = 14566.207215 eV Total energy + Delta-G solvation = -2544.185287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17891 -36.21479 -34.43223 -32.48954 -30.96362 -29.58730 -27.78456 -24.87776 -23.63225 -22.53403 -21.38024 -19.53525 -18.33471 -17.31692 -16.36384 -15.44262 -14.85603 -14.44187 -14.22879 -13.98093 -13.11587 -13.03321 -12.61023 -12.37171 -12.14374 -11.98171 -11.84661 -11.35602 -10.98703 -10.91643 -10.75542 -10.71270 -10.54190 -10.42912 -9.94511 -9.84019 -9.50278 -9.30809 -8.87861 -8.63945 -8.24978 -7.38595 -5.94501 -3.97685 3.33492 3.39919 3.42091 4.34528 4.48470 4.72744 5.10450 5.26349 5.37501 5.47430 5.50384 5.67943 5.83464 5.98112 6.00873 6.07782 6.15828 6.22677 6.34212 6.49133 6.53365 6.58640 6.66445 6.75905 6.85552 6.93839 7.06844 7.31797 7.46144 7.72590 7.80474 7.85335 7.97848 8.11176 8.20471 8.54774 9.07294 9.65497 11.14095 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.007428 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.763596 B = 3768.809945 C = 3936.130144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.084 3.916 4 H 0.086 0.914 5 C 0.039 3.961 6 O -0.558 6.558 7 N -0.526 5.526 8 C 0.057 3.943 9 C -0.120 4.120 10 C -0.103 4.103 11 C 0.055 3.945 12 H 0.038 0.962 13 C -0.516 4.516 14 H 0.051 0.949 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.066 3.934 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.366 0.634 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.054 0.946 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -10.641 6.976 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.026 4.026 4 H 0.104 0.896 5 C -0.040 4.040 6 O -0.363 6.363 7 N -0.249 5.249 8 C -0.070 4.070 9 C -0.158 4.158 10 C -0.141 4.141 11 C 0.036 3.964 12 H 0.057 0.943 13 C -0.554 4.554 14 H 0.070 0.930 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.061 4.061 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.212 0.788 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.836 -10.626 6.696 12.876 hybrid contribution 1.963 1.113 0.060 2.257 sum 4.799 -9.513 6.756 12.616 Atomic orbital electron populations 1.21658 0.95469 0.99986 1.02889 1.21517 0.96273 0.95458 1.01734 1.21920 0.89823 0.95734 0.95078 0.89556 1.23082 0.97263 0.94242 0.89412 1.86665 1.24944 1.71538 1.53130 1.62177 1.59242 1.02888 1.00630 1.22247 0.99010 0.95928 0.89809 1.21710 1.00532 0.98254 0.95298 1.21560 0.98091 0.92063 1.02430 1.18646 0.97119 0.92213 0.88401 0.94349 1.21130 1.22915 0.96121 1.15266 0.93040 1.24930 0.94693 0.98032 0.96086 1.69955 1.25246 1.36134 1.21207 0.86699 0.79072 0.84502 0.78220 1.20732 1.21322 1.20088 1.22312 0.96244 0.86517 1.00995 0.91387 0.94033 0.93286 0.90872 0.92926 0.93072 0.94401 0.78782 0.92368 0.92832 0.93914 0.92541 0.95181 0.90881 0.93102 0.92709 0.96292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.72 37.15 0.36 -1.56 16 2 C -0.11 -1.54 4.74 -26.73 -0.13 -1.66 16 3 C 0.08 1.29 2.43 -67.71 -0.16 1.12 16 4 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 5 C 0.04 0.54 6.36 37.16 0.24 0.78 16 6 O -0.56 -7.60 9.55 -35.23 -0.34 -7.93 16 7 N -0.53 -9.86 4.15 -226.69 -0.94 -10.80 16 8 C 0.06 1.07 4.25 -3.83 -0.02 1.05 16 9 C -0.12 -2.47 6.09 -26.65 -0.16 -2.63 16 10 C -0.10 -2.50 5.09 -26.60 -0.14 -2.64 16 11 C 0.06 1.41 2.13 -91.69 -0.20 1.21 16 12 H 0.04 1.10 8.12 -51.93 -0.42 0.68 16 13 C -0.52 -14.36 8.49 -34.44 -0.29 -14.65 16 14 H 0.05 1.41 7.75 -52.48 -0.41 1.00 16 15 C 0.06 1.81 5.27 -17.82 -0.09 1.71 16 16 N -0.89 -25.91 11.99 55.43 0.66 -25.25 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.07 1.43 4.09 -3.83 -0.02 1.41 16 22 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 23 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.08 5.54 -51.93 -0.29 0.79 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.77 6.18 -51.93 -0.32 0.45 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.37 3.46 9.12 45.56 0.42 3.87 16 30 H 0.06 1.02 5.82 -51.93 -0.30 0.71 16 31 H 0.05 1.03 5.62 -51.93 -0.29 0.74 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.97 6.81 -51.93 -0.35 1.61 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16 38 H 0.02 0.41 6.47 -51.93 -0.34 0.08 16 LS Contribution 286.05 15.07 4.31 4.31 Total: -1.00 -29.49 286.05 -7.58 -37.07 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.65 Total: 1.96 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.61 Total: -15.86 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.27 Total: -36.05 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.34 Total: -7.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.49 -7.58 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.261 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds