Wall clock time and date at job start Sun Mar 29 2020 21:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 H 1.08996 * 109.46753 * 57.10132 * 3 2 1 5 5 C 1.53003 * 109.46888 * 177.10220 * 3 2 1 6 6 O 1.42898 * 109.47242 * 53.55160 * 5 3 2 7 7 N 1.46894 * 109.46784 * 297.10413 * 3 2 1 8 8 C 1.46853 * 111.00156 * 305.33509 * 7 3 2 9 9 C 1.53034 * 109.52400 * 174.16165 * 8 7 3 10 10 C 1.53124 * 109.31035 * 59.16542 * 9 8 7 11 11 C 1.53122 * 109.15710 * 302.40293 * 10 9 8 12 12 H 1.09004 * 109.50270 * 297.63579 * 11 10 9 13 13 C 1.50696 * 109.50353 * 177.55736 * 11 10 9 14 14 H 1.08004 * 119.99635 * 245.40897 * 13 11 10 15 15 C 1.37875 * 120.00222 * 65.40588 * 13 11 10 16 16 N 1.31511 * 120.00025 * 5.62725 * 15 13 11 17 17 Si 1.86801 * 120.00070 * 185.62628 * 15 13 11 18 18 H 1.48501 * 109.46812 * 85.00046 * 17 15 13 19 19 H 1.48498 * 109.47308 * 204.99512 * 17 15 13 20 20 H 1.48498 * 109.47437 * 325.00050 * 17 15 13 21 21 C 1.46848 * 110.99892 * 181.13398 * 7 3 2 22 22 H 1.08999 * 109.47077 * 65.04191 * 1 2 3 23 23 H 1.09008 * 109.47233 * 185.03776 * 1 2 3 24 24 H 1.08997 * 109.47705 * 305.03970 * 1 2 3 25 25 H 1.08996 * 109.47722 * 239.99948 * 2 1 3 26 26 H 1.08999 * 109.47224 * 119.99814 * 2 1 3 27 27 H 1.09004 * 109.46380 * 173.54609 * 5 3 2 28 28 H 1.08993 * 109.47180 * 293.54195 * 5 3 2 29 29 H 0.96696 * 113.99748 * 179.97438 * 6 5 3 30 30 H 1.09007 * 109.45678 * 54.14764 * 8 7 3 31 31 H 1.09000 * 109.46255 * 294.18310 * 8 7 3 32 32 H 1.08997 * 109.50536 * 179.12268 * 9 8 7 33 33 H 1.09001 * 109.50664 * 299.20515 * 9 8 7 34 34 H 1.09000 * 109.52040 * 62.26905 * 10 9 8 35 35 H 1.09002 * 109.52207 * 182.45605 * 10 9 8 36 36 H 0.97003 * 120.00245 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.45995 * 305.85231 * 21 7 3 38 38 H 1.08997 * 109.46692 * 65.82213 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6348 1.9711 0.8628 5 6 3.5682 1.4431 0.0729 6 8 4.0954 0.6247 -0.9732 7 7 1.6082 2.1144 -1.2329 8 6 2.0295 1.3586 -2.4194 9 6 1.4405 2.0067 -3.6744 10 6 1.9253 3.4560 -3.7708 11 6 1.5166 4.2081 -2.5012 12 1 0.4295 4.2274 -2.4237 13 6 2.0418 5.6193 -2.5614 14 1 2.7900 5.9476 -1.8551 15 6 1.5673 6.4914 -3.5181 16 7 0.5790 6.1286 -4.3062 17 14 2.3281 8.1883 -3.6948 18 1 3.5256 8.1052 -4.5689 19 1 1.3373 9.1145 -4.2995 20 1 2.7262 8.6941 -2.3566 21 6 2.1033 3.4961 -1.2802 22 1 -0.3633 0.4336 -0.9317 23 1 -0.3634 -1.0238 0.0902 24 1 -0.3634 0.5900 0.8413 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9370 2.4624 -0.0423 28 1 3.8861 1.0487 1.0380 29 1 5.0611 0.5790 -0.9880 30 1 1.6742 0.3311 -2.3404 31 1 3.1175 1.3625 -2.4851 32 1 1.7661 1.4547 -4.5560 33 1 0.3522 1.9902 -3.6160 34 1 3.0107 3.4712 -3.8691 35 1 1.4732 3.9342 -4.6398 36 1 0.2448 6.7422 -4.9791 37 1 1.8017 4.0212 -0.3739 38 1 3.1910 3.4900 -1.3513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930923355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:08 Heat of formation + Delta-G solvation = -80.743142 kcal Electronic energy + Delta-G solvation = -17111.277707 eV Core-core repulsion = 14566.207215 eV Total energy + Delta-G solvation = -2545.070492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59512 -37.61211 -35.83695 -34.34886 -32.44888 -31.44293 -29.03437 -26.88747 -25.01878 -23.95507 -23.06132 -21.06756 -19.96968 -18.50444 -18.23564 -17.00885 -16.50250 -15.95711 -15.59009 -15.36409 -14.77983 -14.64913 -14.21500 -13.87934 -13.68834 -13.42841 -13.22675 -12.83807 -12.80296 -12.62312 -12.53114 -12.11968 -11.94912 -11.88190 -11.58020 -11.37924 -11.30838 -10.76283 -10.67445 -10.58617 -10.37561 -8.85455 -8.10113 -6.21184 1.40668 1.41273 1.50921 2.42964 3.13967 3.19517 3.54532 3.96269 4.12723 4.26861 4.35885 4.43333 4.46455 4.52181 4.65244 4.70099 4.76758 4.85237 4.93381 4.98474 5.10895 5.13894 5.19741 5.24295 5.29712 5.44063 5.47579 5.52091 5.62236 5.65393 6.00424 6.09313 6.25316 6.50990 6.53333 6.90883 6.93171 7.46061 8.97940 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.007428 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.763596 B = 3768.809945 C = 3936.130144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.076 3.924 4 H 0.090 0.910 5 C 0.046 3.954 6 O -0.572 6.572 7 N -0.536 5.536 8 C 0.068 3.932 9 C -0.115 4.115 10 C -0.094 4.094 11 C 0.053 3.947 12 H -0.004 1.004 13 C -0.536 4.536 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.083 3.917 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.386 0.614 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.038 0.962 36 H 0.260 0.740 37 H 0.051 0.949 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -11.679 8.156 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.034 4.034 6 O -0.380 6.380 7 N -0.260 5.260 8 C -0.059 4.059 9 C -0.153 4.153 10 C -0.133 4.133 11 C 0.034 3.966 12 H 0.014 0.986 13 C -0.575 4.575 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.558 5.558 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.044 4.044 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.235 0.765 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.111 -11.679 7.891 14.683 hybrid contribution 1.553 1.398 -0.289 2.110 sum 5.664 -10.281 7.603 13.985 Atomic orbital electron populations 1.21628 0.95544 1.01022 1.01586 1.21465 0.96104 0.94094 1.02487 1.22083 0.91439 0.96507 0.93207 0.89155 1.22918 0.95825 0.93722 0.90893 1.86581 1.26909 1.71210 1.53254 1.62081 1.59789 1.01800 1.02311 1.22154 0.98844 0.96334 0.88609 1.21652 0.99738 0.96171 0.97708 1.21368 0.97365 0.94192 1.00340 1.18566 0.94562 0.92429 0.91011 0.98565 1.21516 1.22992 0.97570 1.15383 0.93017 1.25744 0.95037 1.02022 0.95738 1.70096 1.26431 1.37495 1.21731 0.85651 0.78253 0.79741 0.78499 1.20036 1.20984 1.19164 1.21943 0.95758 0.88085 0.98647 0.93947 0.92114 0.93068 0.91671 0.90451 0.94686 0.91417 0.76527 0.90562 0.92722 0.91850 0.93857 0.95579 0.94321 0.93116 0.93059 0.96299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.72 71.98 0.70 -2.79 16 2 C -0.10 -2.54 4.74 30.59 0.15 -2.39 16 3 C 0.08 2.17 2.43 44.92 0.11 2.28 16 4 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 5 C 0.05 1.13 6.36 71.98 0.46 1.59 16 6 O -0.57 -13.85 9.55 -148.98 -1.42 -15.27 16 7 N -0.54 -19.70 4.15 -871.10 -3.61 -23.31 16 8 C 0.07 2.43 4.25 86.32 0.37 2.80 16 9 C -0.11 -4.72 6.09 30.65 0.19 -4.53 16 10 C -0.09 -4.70 5.09 30.68 0.16 -4.54 16 11 C 0.05 2.80 2.13 -11.49 -0.02 2.78 16 12 H 0.00 -0.24 8.12 -2.39 -0.02 -0.25 16 13 C -0.54 -30.48 8.49 25.60 0.22 -30.27 16 14 H 0.05 2.86 7.75 -2.91 -0.02 2.84 16 15 C 0.01 0.76 5.27 84.65 0.45 1.21 16 16 N -0.92 -55.23 11.99 21.45 0.26 -54.97 16 17 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.08 3.60 4.09 86.33 0.35 3.96 16 22 H 0.04 1.26 7.84 -2.39 -0.02 1.24 16 23 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.72 5.54 -2.39 -0.01 1.71 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.03 0.98 6.18 -2.38 -0.01 0.97 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.39 6.08 9.12 -74.06 -0.68 5.41 16 30 H 0.08 2.50 5.82 -2.38 -0.01 2.49 16 31 H 0.05 1.99 5.62 -2.39 -0.01 1.98 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 2.16 6.81 -2.39 -0.02 2.14 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.05 2.21 8.12 -2.38 -0.02 2.19 16 38 H 0.02 0.82 6.47 -2.39 -0.02 0.80 16 Total: -1.00 -64.33 286.05 0.72 -63.61 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.35 Total: 13.30 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 3.11 Total: -29.90 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.35 Total: -78.29 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.42 Total: -15.27 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.33 0.72 -63.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds