Wall clock time and date at job start Sun Mar 29 2020 21:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47141 * 2 1 4 4 H 1.09002 * 109.47509 * 302.69693 * 3 2 1 5 5 C 1.52998 * 109.47602 * 62.70210 * 3 2 1 6 6 O 1.42899 * 109.46971 * 54.99465 * 5 3 2 7 7 N 1.46906 * 109.46735 * 182.70081 * 3 2 1 8 8 C 1.46846 * 111.00239 * 57.50295 * 7 3 2 9 9 C 1.53028 * 109.52495 * 185.84014 * 8 7 3 10 10 C 1.53211 * 109.29746 * 300.81650 * 9 8 7 11 11 C 1.53114 * 109.11369 * 57.63161 * 10 9 8 12 12 H 1.08997 * 109.51078 * 62.32719 * 11 10 9 13 13 C 1.50710 * 109.49851 * 182.40587 * 11 10 9 14 14 H 1.07993 * 119.99730 * 119.91968 * 13 11 10 15 15 C 1.37879 * 119.99730 * 299.91545 * 13 11 10 16 16 N 1.31514 * 120.00031 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99829 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46939 * 90.00201 * 17 15 13 19 19 H 1.48500 * 109.47334 * 210.00230 * 17 15 13 20 20 H 1.48498 * 109.47439 * 330.00432 * 17 15 13 21 21 C 1.46849 * 110.99544 * 181.70691 * 7 3 2 22 22 H 1.09005 * 109.46750 * 59.38372 * 1 2 3 23 23 H 1.08998 * 109.47367 * 179.38375 * 1 2 3 24 24 H 1.08999 * 109.47155 * 299.38507 * 1 2 3 25 25 H 1.08997 * 109.46609 * 239.99428 * 2 1 3 26 26 H 1.08996 * 109.46665 * 119.99987 * 2 1 3 27 27 H 1.08996 * 109.47189 * 175.00035 * 5 3 2 28 28 H 1.09005 * 109.46806 * 295.00122 * 5 3 2 29 29 H 0.96700 * 113.99851 * 179.97438 * 6 5 3 30 30 H 1.09005 * 109.45862 * 305.85253 * 8 7 3 31 31 H 1.08999 * 109.46449 * 65.81757 * 8 7 3 32 32 H 1.09004 * 109.50868 * 60.75221 * 9 8 7 33 33 H 1.09002 * 109.50750 * 180.83318 * 9 8 7 34 34 H 1.08993 * 109.51073 * 297.75492 * 10 9 8 35 35 H 1.09001 * 109.57044 * 177.54174 * 10 9 8 36 36 H 0.96993 * 119.99732 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46259 * 54.14878 * 21 7 3 38 38 H 1.09000 * 109.45728 * 294.17047 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6377 1.9701 -0.8648 5 6 1.5863 2.1439 1.2818 6 8 2.0154 1.3878 2.4159 7 7 3.5076 1.4428 -0.0653 8 6 3.9817 0.7247 -1.2552 9 6 5.5078 0.6194 -1.2147 10 6 6.1115 2.0269 -1.1708 11 6 5.5635 2.7696 0.0508 12 1 5.8675 2.2499 0.9594 13 6 6.1060 4.1755 0.0699 14 1 5.4290 5.0160 0.0323 15 6 7.4667 4.3885 0.1356 16 7 8.2911 3.3649 0.1810 17 14 8.1391 6.1311 0.1600 18 1 8.2487 6.5997 1.5649 19 1 9.4812 6.1528 -0.4753 20 1 7.2219 7.0262 -0.5901 21 6 4.0356 2.8126 -0.0263 22 1 -0.3633 0.5234 -0.8845 23 1 -0.3634 -1.0276 -0.0111 24 1 -0.3633 0.5042 0.8954 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0229 3.1417 1.3240 28 1 0.4991 2.2224 1.2877 29 1 1.7622 1.7747 3.2652 30 1 3.5490 -0.2756 -1.2720 31 1 3.6786 1.2664 -2.1511 32 1 5.8111 0.0658 -0.3260 33 1 5.8605 0.0993 -2.1054 34 1 5.8407 2.5675 -2.0776 35 1 7.1968 1.9566 -1.0979 36 1 9.2482 3.5148 0.2268 37 1 3.6422 3.3287 0.8494 38 1 3.7323 3.3444 -0.9281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:10 Heat of formation + Delta-G solvation = -59.478428 kcal Electronic energy + Delta-G solvation = -16879.740886 eV Core-core repulsion = 14335.592501 eV Total energy + Delta-G solvation = -2544.148385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89272 -36.43323 -34.36672 -32.66179 -31.06726 -29.77721 -27.36913 -25.13956 -24.02199 -22.33747 -21.11457 -19.48446 -18.59231 -17.04111 -16.47415 -15.72293 -14.67561 -14.48454 -14.25671 -13.53448 -13.36487 -13.22746 -12.84868 -12.55070 -12.23863 -11.97068 -11.80555 -11.52293 -11.22814 -10.92676 -10.76234 -10.70684 -10.52830 -10.23569 -9.86415 -9.77090 -9.60349 -9.33027 -8.92046 -8.60783 -8.24823 -7.49736 -5.92650 -3.98782 3.33031 3.39599 3.42342 4.37114 4.52536 4.63773 5.11764 5.14110 5.37049 5.47295 5.54036 5.61878 5.67684 5.73488 5.90289 5.95461 6.04421 6.08998 6.18420 6.34287 6.38607 6.47385 6.58950 6.63304 6.80734 6.84054 7.06565 7.30646 7.48314 7.78160 7.81597 7.89667 8.00659 8.16892 8.24643 8.54316 9.05522 9.65046 11.13341 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.007219 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.344776 B = 3877.627144 C = 4306.190589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.085 3.915 4 H 0.040 0.960 5 C 0.082 3.918 6 O -0.551 6.551 7 N -0.524 5.524 8 C 0.060 3.940 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.056 3.944 12 H 0.035 0.965 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.066 3.934 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.368 0.632 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.259 0.741 37 H 0.061 0.939 38 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 -4.548 -0.282 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.024 4.024 4 H 0.058 0.942 5 C 0.004 3.996 6 O -0.355 6.355 7 N -0.249 5.249 8 C -0.068 4.068 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.037 3.963 12 H 0.053 0.947 13 C -0.553 4.553 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.061 4.061 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.213 0.787 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -12.052 -5.220 -0.346 13.138 hybrid contribution -0.145 1.860 -0.374 1.902 sum -12.196 -3.360 -0.720 12.671 Atomic orbital electron populations 1.21793 0.96374 1.01226 1.01280 1.21525 0.94608 0.96297 1.02873 1.21658 0.89842 0.96235 0.94688 0.94221 1.22277 0.96186 0.94525 0.86640 1.86619 1.81580 1.51788 1.15479 1.61971 1.05641 1.17900 1.39362 1.22102 0.97082 0.97311 0.90329 1.21683 0.93376 1.00212 1.00201 1.21664 1.03201 0.91627 0.98335 1.18645 0.87282 0.95371 0.95007 0.94710 1.21158 0.91660 0.92007 1.50431 0.92997 1.24932 0.97080 0.96618 0.95216 1.69897 1.02768 1.29419 1.50614 0.86643 0.78291 0.85227 0.78086 1.20733 1.21285 1.20084 1.22365 0.99393 0.86045 0.98299 0.93365 0.92965 0.92719 0.92153 0.90206 0.93215 0.94194 0.78712 0.91972 0.96298 0.92072 0.93683 0.95316 0.89167 0.93101 0.92093 0.96793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.61 37.16 0.36 -1.31 16 2 C -0.12 -1.62 5.06 -26.73 -0.14 -1.76 16 3 C 0.08 1.35 1.97 -67.71 -0.13 1.22 16 4 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 5 C 0.08 1.19 6.00 37.16 0.22 1.41 16 6 O -0.55 -8.34 12.68 -35.23 -0.45 -8.79 16 7 N -0.52 -10.24 4.47 -226.69 -1.01 -11.25 16 8 C 0.06 1.11 5.17 -3.84 -0.02 1.09 16 9 C -0.12 -2.40 6.09 -26.61 -0.16 -2.56 16 10 C -0.11 -2.70 5.03 -26.56 -0.13 -2.83 16 11 C 0.06 1.44 2.26 -91.69 -0.21 1.24 16 12 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 13 C -0.51 -14.37 8.56 -34.43 -0.29 -14.67 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -25.81 11.35 55.43 0.63 -25.19 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.07 1.45 4.42 -3.83 -0.02 1.43 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.59 6.64 -51.93 -0.34 0.25 16 25 H 0.06 0.83 6.09 -51.93 -0.32 0.52 16 26 H 0.08 1.25 7.47 -51.93 -0.39 0.87 16 27 H 0.05 0.77 5.99 -51.93 -0.31 0.46 16 28 H 0.04 0.47 6.77 -51.93 -0.35 0.12 16 29 H 0.37 3.84 9.12 45.56 0.42 4.26 16 30 H 0.06 1.03 5.88 -51.93 -0.31 0.72 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 2.45 6.15 -51.93 -0.32 2.14 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 1.33 5.86 -51.93 -0.30 1.02 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 288.16 15.07 4.34 4.34 Total: -1.00 -30.21 288.16 -7.70 -37.91 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.57 Total: 1.56 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.62 Total: -15.07 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.38 Total: -36.44 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.45 Total: -8.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.21 -7.70 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.565 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds