Wall clock time and date at job start Sun Mar 29 2020 21:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47141 * 2 1 4 4 H 1.09002 * 109.47509 * 302.69693 * 3 2 1 5 5 C 1.52998 * 109.47602 * 62.70210 * 3 2 1 6 6 O 1.42899 * 109.46971 * 54.99465 * 5 3 2 7 7 N 1.46906 * 109.46735 * 182.70081 * 3 2 1 8 8 C 1.46846 * 111.00239 * 57.50295 * 7 3 2 9 9 C 1.53028 * 109.52495 * 185.84014 * 8 7 3 10 10 C 1.53211 * 109.29746 * 300.81650 * 9 8 7 11 11 C 1.53114 * 109.11369 * 57.63161 * 10 9 8 12 12 H 1.08997 * 109.51078 * 62.32719 * 11 10 9 13 13 C 1.50710 * 109.49851 * 182.40587 * 11 10 9 14 14 H 1.07993 * 119.99730 * 119.91968 * 13 11 10 15 15 C 1.37879 * 119.99730 * 299.91545 * 13 11 10 16 16 N 1.31514 * 120.00031 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99829 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46939 * 90.00201 * 17 15 13 19 19 H 1.48500 * 109.47334 * 210.00230 * 17 15 13 20 20 H 1.48498 * 109.47439 * 330.00432 * 17 15 13 21 21 C 1.46849 * 110.99544 * 181.70691 * 7 3 2 22 22 H 1.09005 * 109.46750 * 59.38372 * 1 2 3 23 23 H 1.08998 * 109.47367 * 179.38375 * 1 2 3 24 24 H 1.08999 * 109.47155 * 299.38507 * 1 2 3 25 25 H 1.08997 * 109.46609 * 239.99428 * 2 1 3 26 26 H 1.08996 * 109.46665 * 119.99987 * 2 1 3 27 27 H 1.08996 * 109.47189 * 175.00035 * 5 3 2 28 28 H 1.09005 * 109.46806 * 295.00122 * 5 3 2 29 29 H 0.96700 * 113.99851 * 179.97438 * 6 5 3 30 30 H 1.09005 * 109.45862 * 305.85253 * 8 7 3 31 31 H 1.08999 * 109.46449 * 65.81757 * 8 7 3 32 32 H 1.09004 * 109.50868 * 60.75221 * 9 8 7 33 33 H 1.09002 * 109.50750 * 180.83318 * 9 8 7 34 34 H 1.08993 * 109.51073 * 297.75492 * 10 9 8 35 35 H 1.09001 * 109.57044 * 177.54174 * 10 9 8 36 36 H 0.96993 * 119.99732 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46259 * 54.14878 * 21 7 3 38 38 H 1.09000 * 109.45728 * 294.17047 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6377 1.9701 -0.8648 5 6 1.5863 2.1439 1.2818 6 8 2.0154 1.3878 2.4159 7 7 3.5076 1.4428 -0.0653 8 6 3.9817 0.7247 -1.2552 9 6 5.5078 0.6194 -1.2147 10 6 6.1115 2.0269 -1.1708 11 6 5.5635 2.7696 0.0508 12 1 5.8675 2.2499 0.9594 13 6 6.1060 4.1755 0.0699 14 1 5.4290 5.0160 0.0323 15 6 7.4667 4.3885 0.1356 16 7 8.2911 3.3649 0.1810 17 14 8.1391 6.1311 0.1600 18 1 8.2487 6.5997 1.5649 19 1 9.4812 6.1528 -0.4753 20 1 7.2219 7.0262 -0.5901 21 6 4.0356 2.8126 -0.0263 22 1 -0.3633 0.5234 -0.8845 23 1 -0.3634 -1.0276 -0.0111 24 1 -0.3633 0.5042 0.8954 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0229 3.1417 1.3240 28 1 0.4991 2.2224 1.2877 29 1 1.7622 1.7747 3.2652 30 1 3.5490 -0.2756 -1.2720 31 1 3.6786 1.2664 -2.1511 32 1 5.8111 0.0658 -0.3260 33 1 5.8605 0.0993 -2.1054 34 1 5.8407 2.5675 -2.0776 35 1 7.1968 1.9566 -1.0979 36 1 9.2482 3.5148 0.2268 37 1 3.6422 3.3287 0.8494 38 1 3.7323 3.3444 -0.9281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930923356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:09 Heat of formation + Delta-G solvation = -81.216824 kcal Electronic energy + Delta-G solvation = -16880.683534 eV Core-core repulsion = 14335.592501 eV Total energy + Delta-G solvation = -2545.091032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36930 -37.83389 -35.85258 -34.41375 -32.57571 -31.64920 -28.63265 -27.03962 -25.46634 -23.85663 -22.81622 -20.78699 -20.39325 -18.48755 -18.14505 -17.33489 -16.46830 -15.87437 -15.64423 -15.01956 -14.92290 -14.71058 -14.39963 -14.19239 -13.84619 -13.30387 -13.19028 -12.87061 -12.75256 -12.66379 -12.64010 -12.34637 -11.89762 -11.80301 -11.61369 -11.41012 -11.18312 -10.78918 -10.73640 -10.54244 -10.35178 -9.02949 -8.07590 -6.22411 1.41027 1.41254 1.51753 2.42596 3.04683 3.19007 3.52700 3.97261 4.04262 4.17283 4.29791 4.40092 4.47072 4.52388 4.59617 4.62368 4.66731 4.69917 4.82915 4.89655 4.94981 5.06485 5.12112 5.19667 5.24879 5.36923 5.41781 5.50161 5.55436 5.63205 5.98594 6.14488 6.23581 6.44216 6.48370 6.90706 7.04900 7.45477 8.97289 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.007219 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.344776 B = 3877.627144 C = 4306.190589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.077 3.923 4 H 0.048 0.952 5 C 0.083 3.917 6 O -0.573 6.573 7 N -0.538 5.538 8 C 0.063 3.937 9 C -0.111 4.111 10 C -0.104 4.104 11 C 0.054 3.946 12 H -0.008 1.008 13 C -0.536 4.536 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.082 3.918 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.387 0.613 30 H 0.090 0.910 31 H 0.024 0.976 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.452 -4.498 -0.789 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.031 4.031 4 H 0.066 0.934 5 C 0.005 3.995 6 O -0.380 6.380 7 N -0.263 5.263 8 C -0.065 4.065 9 C -0.148 4.148 10 C -0.142 4.142 11 C 0.035 3.965 12 H 0.010 0.990 13 C -0.575 4.575 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.046 4.046 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -13.858 -5.171 -0.840 14.815 hybrid contribution 0.407 1.810 -0.177 1.863 sum -13.451 -3.361 -1.017 13.902 Atomic orbital electron populations 1.21743 0.93884 1.02410 1.01996 1.21462 0.96689 0.94456 1.02028 1.21877 0.87287 0.98070 0.95847 0.93377 1.22287 0.97963 0.93295 0.85979 1.86564 1.82163 1.52477 1.16758 1.61915 1.08343 1.16045 1.40032 1.22102 0.95371 0.98787 0.90225 1.21599 0.95074 0.97450 1.00716 1.21477 1.01329 0.94072 0.97310 1.18564 0.90192 0.94180 0.93569 0.99012 1.21522 0.92219 0.93037 1.50710 0.93071 1.25752 0.97374 1.00722 0.94737 1.70049 1.02960 1.31525 1.51082 0.85588 0.77636 0.80298 0.78310 1.20098 1.20820 1.19229 1.22008 0.96655 0.87884 0.98011 0.92308 0.91639 0.92295 0.91879 0.92098 0.94699 0.90851 0.76536 0.89212 0.95747 0.93503 0.91189 0.95871 0.92417 0.93064 0.92261 0.97158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.61 71.98 0.69 -2.00 16 2 C -0.11 -2.77 5.06 30.59 0.15 -2.62 16 3 C 0.08 2.32 1.97 44.91 0.09 2.41 16 4 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.08 2.25 6.00 71.98 0.43 2.68 16 6 O -0.57 -16.60 12.68 -148.98 -1.89 -18.49 16 7 N -0.54 -20.62 4.47 -871.12 -3.90 -24.52 16 8 C 0.06 2.24 5.17 86.32 0.45 2.68 16 9 C -0.11 -4.52 6.09 30.67 0.19 -4.33 16 10 C -0.10 -5.21 5.03 30.70 0.15 -5.06 16 11 C 0.05 2.87 2.26 -11.48 -0.03 2.85 16 12 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 13 C -0.54 -30.69 8.56 25.60 0.22 -30.47 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.73 5.30 84.66 0.45 1.18 16 16 N -0.92 -54.77 11.35 21.45 0.24 -54.52 16 17 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 C 0.08 3.64 4.42 86.33 0.38 4.02 16 22 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.07 6.64 -2.39 -0.02 1.05 16 25 H 0.06 1.55 6.09 -2.39 -0.01 1.54 16 26 H 0.06 1.80 7.47 -2.39 -0.02 1.78 16 27 H 0.03 1.04 5.99 -2.39 -0.01 1.03 16 28 H 0.07 1.51 6.77 -2.38 -0.02 1.49 16 29 H 0.39 7.54 9.12 -74.06 -0.68 6.87 16 30 H 0.09 2.74 5.88 -2.38 -0.01 2.72 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 36 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.06 2.62 5.86 -2.39 -0.01 2.60 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -66.07 288.16 0.02 -66.05 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.36 Total: 13.60 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 3.18 Total: -28.66 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.65 Total: -79.04 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.89 Total: -18.49 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.07 0.02 -66.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.165 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds