Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47320 * 2 1 4 4 H 1.08997 * 109.47211 * 302.40783 * 3 2 1 5 5 C 1.52998 * 109.47063 * 182.40636 * 3 2 1 6 6 O 1.42902 * 109.47465 * 305.00296 * 5 3 2 7 7 N 1.46898 * 109.46770 * 62.41026 * 3 2 1 8 8 C 1.46838 * 111.00374 * 54.81974 * 7 3 2 9 9 C 1.53042 * 109.52497 * 185.83951 * 8 7 3 10 10 C 1.53121 * 109.27638 * 300.81920 * 9 8 7 11 11 C 1.53103 * 109.15344 * 57.65492 * 10 9 8 12 12 H 1.09002 * 109.50683 * 62.28572 * 11 10 9 13 13 C 1.50698 * 109.48800 * 182.39520 * 11 10 9 14 14 H 1.08004 * 119.99864 * 119.80707 * 13 11 10 15 15 C 1.37879 * 120.00356 * 299.81021 * 13 11 10 16 16 N 1.31510 * 119.99862 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99837 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47096 * 90.00186 * 17 15 13 19 19 H 1.48499 * 109.46712 * 209.99598 * 17 15 13 20 20 H 1.48499 * 109.47185 * 329.99737 * 17 15 13 21 21 C 1.46850 * 110.99669 * 179.03382 * 7 3 2 22 22 H 1.08992 * 109.47445 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47090 * 300.00441 * 1 2 3 24 24 H 1.09004 * 109.46804 * 59.99852 * 1 2 3 25 25 H 1.09004 * 109.47029 * 240.00061 * 2 1 3 26 26 H 1.08999 * 109.47483 * 120.00142 * 2 1 3 27 27 H 1.09002 * 109.47358 * 64.99953 * 5 3 2 28 28 H 1.09003 * 109.47400 * 185.00153 * 5 3 2 29 29 H 0.96701 * 114.00577 * 180.02562 * 6 5 3 30 30 H 1.08992 * 109.46398 * 305.85326 * 8 7 3 31 31 H 1.09004 * 109.46430 * 65.83471 * 8 7 3 32 32 H 1.08997 * 109.50063 * 60.75964 * 9 8 7 33 33 H 1.08999 * 109.50589 * 180.84130 * 9 8 7 34 34 H 1.08998 * 109.52346 * 177.55429 * 10 9 8 35 35 H 1.08992 * 109.52630 * 297.75084 * 10 9 8 36 36 H 0.96998 * 120.00250 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.46027 * 294.16778 * 21 7 3 38 38 H 1.08995 * 109.46574 * 54.15163 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9687 -0.8676 5 6 3.5688 1.4429 -0.0606 6 8 4.0883 0.6548 1.0124 7 7 1.5985 2.1179 1.2275 8 6 2.0133 1.3675 2.4195 9 6 1.4144 2.0188 3.6682 10 6 1.8960 3.4693 3.7621 11 6 1.4933 4.2158 2.4875 12 1 0.4067 4.2317 2.4029 13 6 2.0148 5.6285 2.5463 14 1 2.7033 5.9817 1.7928 15 6 1.6132 6.4700 3.5619 16 7 0.7746 6.0401 4.4792 17 14 2.2603 8.2209 3.6350 18 1 1.3542 9.1157 2.8713 19 1 2.3201 8.6677 5.0499 20 1 3.6209 8.2709 3.0421 21 6 2.0900 3.5010 1.2730 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8949 1.0217 -1.0116 28 1 3.9358 2.4654 0.0289 29 1 5.0540 0.6106 1.0363 30 1 1.6610 0.3390 2.3420 31 1 3.1009 1.3743 2.4927 32 1 0.3266 2.0001 3.6021 33 1 1.7346 1.4704 4.5540 34 1 1.4374 3.9502 4.6261 35 1 2.9807 3.4869 3.8672 36 1 0.4923 6.6319 5.1939 37 1 3.1772 3.4976 1.3515 38 1 1.7931 4.0221 0.3629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = -58.657751 kcal Electronic energy + Delta-G solvation = -17128.247853 eV Core-core repulsion = 14584.135056 eV Total energy + Delta-G solvation = -2544.112798 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17205 -36.19990 -34.43911 -32.49157 -30.92617 -29.56168 -27.77674 -24.88846 -23.60255 -22.51433 -21.36350 -19.52205 -18.31910 -17.31567 -16.35867 -15.41039 -14.85796 -14.45091 -14.22230 -13.97338 -13.09124 -13.02182 -12.60689 -12.37371 -12.14356 -11.96992 -11.82153 -11.31020 -10.98410 -10.92746 -10.73998 -10.69416 -10.52907 -10.42400 -9.93192 -9.76995 -9.45308 -9.33404 -8.89014 -8.60890 -8.23528 -7.36885 -5.92187 -3.98294 3.33059 3.39673 3.42316 4.34650 4.48250 4.74347 5.10397 5.26729 5.37646 5.47859 5.50842 5.68580 5.84140 5.97561 6.02574 6.09925 6.17969 6.23546 6.36715 6.51251 6.54552 6.59448 6.68239 6.78579 6.89810 6.98138 7.09959 7.35036 7.52584 7.73406 7.81014 7.87379 7.99925 8.17561 8.26154 8.55553 9.06106 9.65508 11.13665 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.007440 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.640454 B = 3762.489420 C = 3923.967333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.084 3.916 4 H 0.086 0.914 5 C 0.040 3.960 6 O -0.557 6.557 7 N -0.526 5.526 8 C 0.056 3.944 9 C -0.120 4.120 10 C -0.108 4.108 11 C 0.056 3.944 12 H 0.032 0.968 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.066 3.934 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.365 0.635 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.259 0.741 37 H 0.020 0.980 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -10.405 -7.182 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.026 4.026 4 H 0.104 0.896 5 C -0.040 4.040 6 O -0.362 6.362 7 N -0.249 5.249 8 C -0.071 4.071 9 C -0.158 4.158 10 C -0.146 4.146 11 C 0.037 3.963 12 H 0.050 0.950 13 C -0.553 4.553 14 H 0.070 0.930 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.061 4.061 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.212 0.788 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.525 -10.397 -6.891 12.726 hybrid contribution 1.894 1.121 -0.148 2.206 sum 4.419 -9.276 -7.039 12.455 Atomic orbital electron populations 1.21670 0.95477 1.00197 1.02784 1.21521 0.96312 0.95463 1.01696 1.21907 0.89775 0.95721 0.95166 0.89592 1.23077 0.97312 0.94633 0.88935 1.86682 1.25032 1.73442 1.51037 1.62163 1.59201 1.02881 1.00696 1.22279 0.99177 0.95882 0.89764 1.21723 1.00366 0.98487 0.95227 1.21604 0.98187 0.91769 1.03014 1.18636 0.96587 0.92332 0.88732 0.94964 1.21166 1.27210 0.96510 1.10393 0.93017 1.24933 0.95055 0.98160 0.95705 1.69900 1.33146 1.35537 1.14082 0.86652 0.79238 0.85305 0.77108 1.20749 1.21294 1.20099 1.22305 0.96372 0.86527 1.00864 0.94007 0.91139 0.93416 0.92948 0.90900 0.94419 0.93126 0.78818 0.92481 0.92638 0.92700 0.93961 0.89464 0.95372 0.93125 0.96224 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.78 37.15 0.36 -1.58 16 2 C -0.11 -1.54 4.76 -26.73 -0.13 -1.67 16 3 C 0.08 1.29 2.44 -67.71 -0.16 1.12 16 4 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.04 0.55 6.33 37.16 0.24 0.79 16 6 O -0.56 -7.67 9.49 -35.23 -0.33 -8.01 16 7 N -0.53 -9.91 4.03 -226.70 -0.91 -10.82 16 8 C 0.06 1.06 4.24 -3.84 -0.02 1.04 16 9 C -0.12 -2.50 6.09 -26.65 -0.16 -2.66 16 10 C -0.11 -2.64 5.03 -26.62 -0.13 -2.78 16 11 C 0.06 1.43 2.26 -91.70 -0.21 1.22 16 12 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 13 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.78 11.36 55.43 0.63 -25.15 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.07 1.43 4.09 -3.83 -0.02 1.42 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 1.10 7.67 -51.93 -0.40 0.70 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.08 5.58 -51.93 -0.29 0.79 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 29 H 0.37 3.51 9.12 45.56 0.42 3.93 16 30 H 0.06 1.01 5.83 -51.93 -0.30 0.70 16 31 H 0.06 1.08 5.54 -51.93 -0.29 0.79 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.02 0.43 6.51 -51.93 -0.34 0.09 16 38 H 0.05 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -29.38 284.74 -7.58 -36.96 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.61 Total: 2.29 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.62 Total: -16.05 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.28 Total: -35.97 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.33 Total: -8.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.38 -7.58 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.697 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds