Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47320 * 2 1 4 4 H 1.08997 * 109.47211 * 302.40783 * 3 2 1 5 5 C 1.52998 * 109.47063 * 182.40636 * 3 2 1 6 6 O 1.42902 * 109.47465 * 305.00296 * 5 3 2 7 7 N 1.46898 * 109.46770 * 62.41026 * 3 2 1 8 8 C 1.46838 * 111.00374 * 54.81974 * 7 3 2 9 9 C 1.53042 * 109.52497 * 185.83951 * 8 7 3 10 10 C 1.53121 * 109.27638 * 300.81920 * 9 8 7 11 11 C 1.53103 * 109.15344 * 57.65492 * 10 9 8 12 12 H 1.09002 * 109.50683 * 62.28572 * 11 10 9 13 13 C 1.50698 * 109.48800 * 182.39520 * 11 10 9 14 14 H 1.08004 * 119.99864 * 119.80707 * 13 11 10 15 15 C 1.37879 * 120.00356 * 299.81021 * 13 11 10 16 16 N 1.31510 * 119.99862 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99837 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47096 * 90.00186 * 17 15 13 19 19 H 1.48499 * 109.46712 * 209.99598 * 17 15 13 20 20 H 1.48499 * 109.47185 * 329.99737 * 17 15 13 21 21 C 1.46850 * 110.99669 * 179.03382 * 7 3 2 22 22 H 1.08992 * 109.47445 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47090 * 300.00441 * 1 2 3 24 24 H 1.09004 * 109.46804 * 59.99852 * 1 2 3 25 25 H 1.09004 * 109.47029 * 240.00061 * 2 1 3 26 26 H 1.08999 * 109.47483 * 120.00142 * 2 1 3 27 27 H 1.09002 * 109.47358 * 64.99953 * 5 3 2 28 28 H 1.09003 * 109.47400 * 185.00153 * 5 3 2 29 29 H 0.96701 * 114.00577 * 180.02562 * 6 5 3 30 30 H 1.08992 * 109.46398 * 305.85326 * 8 7 3 31 31 H 1.09004 * 109.46430 * 65.83471 * 8 7 3 32 32 H 1.08997 * 109.50063 * 60.75964 * 9 8 7 33 33 H 1.08999 * 109.50589 * 180.84130 * 9 8 7 34 34 H 1.08998 * 109.52346 * 177.55429 * 10 9 8 35 35 H 1.08992 * 109.52630 * 297.75084 * 10 9 8 36 36 H 0.96998 * 120.00250 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.46027 * 294.16778 * 21 7 3 38 38 H 1.08995 * 109.46574 * 54.15163 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6419 1.9687 -0.8676 5 6 3.5688 1.4429 -0.0606 6 8 4.0883 0.6548 1.0124 7 7 1.5985 2.1179 1.2275 8 6 2.0133 1.3675 2.4195 9 6 1.4144 2.0188 3.6682 10 6 1.8960 3.4693 3.7621 11 6 1.4933 4.2158 2.4875 12 1 0.4067 4.2317 2.4029 13 6 2.0148 5.6285 2.5463 14 1 2.7033 5.9817 1.7928 15 6 1.6132 6.4700 3.5619 16 7 0.7746 6.0401 4.4792 17 14 2.2603 8.2209 3.6350 18 1 1.3542 9.1157 2.8713 19 1 2.3201 8.6677 5.0499 20 1 3.6209 8.2709 3.0421 21 6 2.0900 3.5010 1.2730 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8949 1.0217 -1.0116 28 1 3.9358 2.4654 0.0289 29 1 5.0540 0.6106 1.0363 30 1 1.6610 0.3390 2.3420 31 1 3.1009 1.3743 2.4927 32 1 0.3266 2.0001 3.6021 33 1 1.7346 1.4704 4.5540 34 1 1.4374 3.9502 4.6261 35 1 2.9807 3.4869 3.8672 36 1 0.4923 6.6319 5.1939 37 1 3.1772 3.4976 1.3515 38 1 1.7931 4.0221 0.3629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930923357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = -78.846934 kcal Electronic energy + Delta-G solvation = -17129.123322 eV Core-core repulsion = 14584.135056 eV Total energy + Delta-G solvation = -2544.988266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59524 -37.61382 -35.85269 -34.33612 -32.42707 -31.42105 -29.03598 -26.89966 -24.99081 -23.94324 -23.05658 -21.05700 -19.96809 -18.51259 -18.23542 -16.98582 -16.50069 -15.97869 -15.58270 -15.36019 -14.76898 -14.66123 -14.20751 -13.87346 -13.67489 -13.40636 -13.22095 -12.86057 -12.77511 -12.58102 -12.52033 -12.12483 -11.93925 -11.88743 -11.54191 -11.37878 -11.29976 -10.79800 -10.64204 -10.59618 -10.34287 -8.84662 -8.06821 -6.21435 1.41054 1.41180 1.51585 2.43008 3.13864 3.19747 3.54921 3.95995 4.12824 4.27222 4.37636 4.45880 4.47162 4.52377 4.65731 4.70738 4.77224 4.86336 4.93133 5.00075 5.11879 5.16120 5.20348 5.25726 5.31278 5.44389 5.48244 5.56070 5.63794 5.66041 6.02086 6.17207 6.27632 6.51490 6.53057 6.90387 6.92380 7.46375 8.97854 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.007440 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.640454 B = 3762.489420 C = 3923.967333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C 0.076 3.924 4 H 0.091 0.909 5 C 0.046 3.954 6 O -0.572 6.572 7 N -0.535 5.535 8 C 0.067 3.933 9 C -0.115 4.115 10 C -0.099 4.099 11 C 0.054 3.946 12 H -0.008 1.008 13 C -0.536 4.536 14 H 0.051 0.949 15 C 0.012 3.988 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.083 3.917 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.385 0.615 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.018 0.982 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -11.385 -8.441 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 C -0.033 4.033 4 H 0.109 0.891 5 C -0.034 4.034 6 O -0.379 6.379 7 N -0.259 5.259 8 C -0.060 4.060 9 C -0.153 4.153 10 C -0.137 4.137 11 C 0.035 3.965 12 H 0.010 0.990 13 C -0.575 4.575 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.044 4.044 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.632 -11.391 -8.165 14.478 hybrid contribution 1.536 1.389 0.232 2.084 sum 5.168 -10.002 -7.933 13.773 Atomic orbital electron populations 1.21637 0.95525 1.01057 1.01679 1.21471 0.96167 0.94087 1.02448 1.22075 0.91347 0.96506 0.93322 0.89104 1.22924 0.95917 0.94137 0.90375 1.86595 1.26990 1.73144 1.51202 1.62071 1.59729 1.01780 1.02322 1.22178 0.98947 0.96300 0.88610 1.21660 0.99651 0.96377 0.97600 1.21402 0.97199 0.93973 1.01130 1.18564 0.94186 0.92543 0.91221 0.98950 1.21541 1.27400 0.97972 1.10547 0.93041 1.25750 0.95247 1.02320 0.95312 1.70051 1.34091 1.36911 1.14534 0.85607 0.78914 0.80215 0.77212 1.20110 1.20893 1.19236 1.21938 0.95751 0.88110 0.98625 0.92197 0.93812 0.92944 0.90429 0.91751 0.91381 0.94736 0.76577 0.90669 0.92620 0.93894 0.92061 0.92792 0.96154 0.93118 0.96428 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.78 71.98 0.70 -2.81 16 2 C -0.10 -2.55 4.76 30.59 0.15 -2.40 16 3 C 0.08 2.18 2.44 44.92 0.11 2.28 16 4 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 5 C 0.05 1.14 6.33 71.98 0.46 1.60 16 6 O -0.57 -14.10 9.49 -148.98 -1.41 -15.51 16 7 N -0.54 -19.76 4.03 -871.13 -3.51 -23.27 16 8 C 0.07 2.43 4.24 86.33 0.37 2.80 16 9 C -0.11 -4.80 6.09 30.65 0.19 -4.61 16 10 C -0.10 -4.99 5.03 30.67 0.15 -4.83 16 11 C 0.05 2.84 2.26 -11.49 -0.03 2.81 16 12 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 13 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.70 5.30 84.66 0.45 1.15 16 16 N -0.92 -54.71 11.36 21.45 0.24 -54.46 16 17 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.08 3.62 4.09 86.33 0.35 3.97 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.31 7.67 -2.39 -0.02 1.30 16 24 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.06 1.71 5.58 -2.39 -0.01 1.69 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.03 0.97 6.25 -2.39 -0.01 0.96 16 29 H 0.38 6.26 9.12 -74.06 -0.68 5.58 16 30 H 0.08 2.50 5.83 -2.39 -0.01 2.48 16 31 H 0.06 2.07 5.54 -2.38 -0.01 2.05 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 3.07 6.16 -2.39 -0.01 3.05 16 35 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 37 H 0.02 0.77 6.51 -2.38 -0.02 0.75 16 38 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -64.01 284.74 0.82 -63.19 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.35 Total: 13.89 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.12 Total: -30.35 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.27 Total: -77.73 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.41 Total: -15.51 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.01 0.82 -63.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.659 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds