Wall clock time and date at job start Sun Mar 29 2020 21:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46981 * 2 1 4 4 C 1.53005 * 109.46981 * 240.00584 * 2 1 3 5 5 O 1.42899 * 109.47634 * 120.00216 * 2 1 3 6 6 C 1.42903 * 113.99629 * 60.00037 * 5 2 1 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 2 8 8 H 1.09001 * 109.87139 * 305.69512 * 7 6 5 9 9 C 1.54326 * 109.87922 * 184.68280 * 7 6 5 10 10 C 1.55400 * 102.82750 * 218.47671 * 9 7 6 11 11 C 1.54904 * 101.66432 * 35.34387 * 10 9 7 12 12 N 1.47014 * 109.88575 * 66.71804 * 7 6 5 13 13 C 1.36936 * 125.64642 * 298.39139 * 12 7 6 14 14 H 1.08004 * 120.00469 * 0.02562 * 13 12 7 15 15 C 1.38818 * 120.00274 * 180.02562 * 13 12 7 16 16 N 1.31616 * 119.99543 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47479 * 89.99623 * 17 15 13 19 19 H 1.48504 * 109.47355 * 209.99880 * 17 15 13 20 20 H 1.48504 * 109.46981 * 329.99678 * 17 15 13 21 21 H 1.09007 * 109.46479 * 299.99130 * 1 2 3 22 22 H 1.08994 * 109.47723 * 59.99659 * 1 2 3 23 23 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46733 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46916 * 300.00220 * 3 2 1 26 26 H 1.08997 * 109.46502 * 60.00620 * 3 2 1 27 27 H 1.09003 * 109.46983 * 299.99594 * 4 2 1 28 28 H 1.09003 * 109.46954 * 59.99621 * 4 2 1 29 29 H 1.08995 * 109.47205 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.47382 * 59.99956 * 6 5 2 31 31 H 1.09001 * 109.46938 * 299.99942 * 6 5 2 32 32 H 1.08992 * 110.71977 * 336.75340 * 9 7 6 33 33 H 1.09003 * 110.71823 * 100.02241 * 9 7 6 34 34 H 1.08997 * 110.89110 * 277.26891 * 10 9 7 35 35 H 1.09007 * 111.06758 * 153.48585 * 10 9 7 36 36 H 1.09007 * 110.36854 * 204.23758 * 11 10 9 37 37 H 1.08993 * 110.37216 * 81.90974 * 11 10 9 38 38 H 0.97000 * 119.99476 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0065 -0.6737 1.1667 6 6 1.5848 -2.0356 1.2643 7 6 2.1498 -2.6537 2.5448 8 1 3.2317 -2.5246 2.5725 9 6 1.7989 -4.1555 2.6017 10 6 1.4822 -4.3790 4.1065 11 6 0.8061 -3.0382 4.4869 12 7 1.5396 -2.0149 3.7199 13 6 1.6360 -0.6888 4.0474 14 1 2.1985 -0.0162 3.4168 15 6 1.0106 -0.2087 5.1900 16 7 0.3247 -1.0282 5.9583 17 14 1.1415 1.6004 5.6363 18 1 0.0210 2.3472 5.0100 19 1 1.0740 1.7524 7.1120 20 1 2.4336 2.1400 5.1418 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2494 28 1 1.6766 -0.2072 -2.1393 29 1 3.1299 -0.7208 -1.2496 30 1 1.9492 -2.5916 0.4005 31 1 0.4959 -2.0778 1.2906 32 1 0.9243 -4.3706 1.9878 33 1 2.6490 -4.7622 2.2897 34 1 2.3978 -4.5309 4.6780 35 1 0.7959 -5.2150 4.2426 36 1 0.9048 -2.8536 5.5567 37 1 -0.2448 -3.0478 4.1981 38 1 -0.1126 -0.6926 6.7564 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932172947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:18 Heat of formation + Delta-G solvation = -30.949216 kcal Electronic energy + Delta-G solvation = -17138.560492 eV Core-core repulsion = 14595.649227 eV Total energy + Delta-G solvation = -2542.911265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.65849 -37.05387 -32.93695 -32.36742 -29.35290 -28.74614 -27.15308 -27.07555 -24.65741 -23.40134 -20.21670 -19.37897 -19.20751 -16.70118 -15.92630 -15.54471 -14.64095 -14.42308 -13.87930 -13.64610 -13.36516 -13.04490 -12.11508 -11.95561 -11.89958 -11.84974 -11.69959 -11.47829 -11.41054 -11.25906 -10.91554 -10.71587 -10.61487 -10.23433 -10.13193 -9.96205 -9.76388 -9.62883 -9.30468 -8.71891 -8.47715 -6.69175 -5.47321 -2.86786 3.50290 3.55257 3.58095 4.28040 4.64161 5.13887 5.17936 5.35760 5.48684 5.60008 5.61917 5.71288 5.77666 5.80716 5.87818 5.95942 6.01538 6.05951 6.11856 6.20119 6.24013 6.26727 6.37560 6.40713 6.56147 6.60509 6.65320 6.74021 6.78295 7.14239 7.62637 7.91660 8.02521 8.05230 8.52122 9.43209 10.02081 10.65434 11.57669 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.012464 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.808800 B = 2245.899747 C = 3414.797628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 C -0.135 4.135 4 C -0.175 4.175 5 O -0.352 6.352 6 C 0.055 3.945 7 C 0.160 3.840 8 H 0.039 0.961 9 C -0.123 4.123 10 C -0.146 4.146 11 C 0.149 3.851 12 N -0.590 5.590 13 C -0.192 4.192 14 H 0.089 0.911 15 C -0.023 4.023 16 N -0.932 5.932 17 Si 0.910 3.090 18 H -0.293 1.293 19 H -0.294 1.294 20 H -0.282 1.282 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.009 0.991 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -2.092 -11.469 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.063 3.937 3 C -0.192 4.192 4 C -0.232 4.232 5 O -0.271 6.271 6 C -0.024 4.024 7 C 0.052 3.948 8 H 0.057 0.943 9 C -0.161 4.161 10 C -0.184 4.184 11 C 0.024 3.976 12 N -0.313 5.313 13 C -0.321 4.321 14 H 0.106 0.894 15 C -0.216 4.216 16 N -0.582 5.582 17 Si 0.741 3.259 18 H -0.220 1.220 19 H -0.221 1.221 20 H -0.208 1.208 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.027 0.973 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.816 -1.836 -11.149 11.444 hybrid contribution -0.322 0.793 -0.124 0.865 sum 1.493 -1.043 -11.273 11.419 Atomic orbital electron populations 1.22370 0.96277 1.02242 1.02183 1.21379 0.92999 0.93150 0.86147 1.21713 1.01498 0.94049 1.01986 1.22419 1.01752 1.00940 0.98107 1.88145 1.73534 1.24336 1.41068 1.23273 0.98619 0.82524 0.97985 1.20981 0.96438 0.90372 0.86991 0.94346 1.22528 1.00170 0.95464 0.97986 1.23045 1.00503 1.00146 0.94751 1.21973 0.92015 0.83229 1.00380 1.44596 1.58549 1.05466 1.22719 1.19307 1.25315 0.82957 1.04502 0.89362 1.24759 1.00863 0.97754 0.98226 1.69801 1.39349 1.32363 1.16705 0.86113 0.77569 0.85080 0.77101 1.22034 1.22064 1.20770 0.91312 0.92683 0.92530 0.92229 0.92051 0.91603 0.92471 0.92350 0.92157 0.95301 0.93735 0.92182 0.92191 0.92270 0.92544 0.87538 0.97335 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.25 37.16 0.31 -2.43 16 2 C 0.10 1.68 1.14 -90.61 -0.10 1.58 16 3 C -0.14 -2.01 8.84 37.16 0.33 -1.68 16 4 C -0.17 -2.34 8.25 37.16 0.31 -2.03 16 5 O -0.35 -7.24 8.11 -35.23 -0.29 -7.53 16 6 C 0.05 1.07 4.56 37.16 0.17 1.24 16 7 C 0.16 3.45 3.46 -66.96 -0.23 3.22 16 8 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 9 C -0.12 -2.22 6.50 -24.76 -0.16 -2.38 16 10 C -0.15 -2.85 7.09 -24.45 -0.17 -3.02 16 11 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 12 N -0.59 -15.39 3.13 -162.58 -0.51 -15.89 16 13 C -0.19 -5.49 9.48 -15.06 -0.14 -5.63 16 14 H 0.09 2.53 6.67 -52.48 -0.35 2.18 16 15 C -0.02 -0.66 5.49 -17.43 -0.10 -0.75 16 16 N -0.93 -27.97 10.09 55.49 0.56 -27.41 16 17 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.49 6.42 -51.93 -0.33 0.16 16 31 H 0.04 0.92 6.42 -51.93 -0.33 0.58 16 32 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.11 2.99 5.87 -51.92 -0.30 2.69 16 37 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -30.76 293.47 -7.26 -38.02 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.62 Total: -1.52 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 0.19 Total: -8.18 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.05 Total: -43.30 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.29 Total: -7.53 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.76 -7.26 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932172947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.073 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds