Wall clock time and date at job start Sun Mar 29 2020 21:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46981 * 2 1 4 4 C 1.53005 * 109.46981 * 240.00584 * 2 1 3 5 5 O 1.42899 * 109.47634 * 120.00216 * 2 1 3 6 6 C 1.42903 * 113.99629 * 60.00037 * 5 2 1 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 2 8 8 H 1.09001 * 109.87139 * 305.69512 * 7 6 5 9 9 C 1.54326 * 109.87922 * 184.68280 * 7 6 5 10 10 C 1.55400 * 102.82750 * 218.47671 * 9 7 6 11 11 C 1.54904 * 101.66432 * 35.34387 * 10 9 7 12 12 N 1.47014 * 109.88575 * 66.71804 * 7 6 5 13 13 C 1.36936 * 125.64642 * 298.39139 * 12 7 6 14 14 H 1.08004 * 120.00469 * 0.02562 * 13 12 7 15 15 C 1.38818 * 120.00274 * 180.02562 * 13 12 7 16 16 N 1.31616 * 119.99543 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00216 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47479 * 89.99623 * 17 15 13 19 19 H 1.48504 * 109.47355 * 209.99880 * 17 15 13 20 20 H 1.48504 * 109.46981 * 329.99678 * 17 15 13 21 21 H 1.09007 * 109.46479 * 299.99130 * 1 2 3 22 22 H 1.08994 * 109.47723 * 59.99659 * 1 2 3 23 23 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46733 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46916 * 300.00220 * 3 2 1 26 26 H 1.08997 * 109.46502 * 60.00620 * 3 2 1 27 27 H 1.09003 * 109.46983 * 299.99594 * 4 2 1 28 28 H 1.09003 * 109.46954 * 59.99621 * 4 2 1 29 29 H 1.08995 * 109.47205 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.47382 * 59.99956 * 6 5 2 31 31 H 1.09001 * 109.46938 * 299.99942 * 6 5 2 32 32 H 1.08992 * 110.71977 * 336.75340 * 9 7 6 33 33 H 1.09003 * 110.71823 * 100.02241 * 9 7 6 34 34 H 1.08997 * 110.89110 * 277.26891 * 10 9 7 35 35 H 1.09007 * 111.06758 * 153.48585 * 10 9 7 36 36 H 1.09007 * 110.36854 * 204.23758 * 11 10 9 37 37 H 1.08993 * 110.37216 * 81.90974 * 11 10 9 38 38 H 0.97000 * 119.99476 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0065 -0.6737 1.1667 6 6 1.5848 -2.0356 1.2643 7 6 2.1498 -2.6537 2.5448 8 1 3.2317 -2.5246 2.5725 9 6 1.7989 -4.1555 2.6017 10 6 1.4822 -4.3790 4.1065 11 6 0.8061 -3.0382 4.4869 12 7 1.5396 -2.0149 3.7199 13 6 1.6360 -0.6888 4.0474 14 1 2.1985 -0.0162 3.4168 15 6 1.0106 -0.2087 5.1900 16 7 0.3247 -1.0282 5.9583 17 14 1.1415 1.6004 5.6363 18 1 0.0210 2.3472 5.0100 19 1 1.0740 1.7524 7.1120 20 1 2.4336 2.1400 5.1418 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2494 28 1 1.6766 -0.2072 -2.1393 29 1 3.1299 -0.7208 -1.2496 30 1 1.9492 -2.5916 0.4005 31 1 0.4959 -2.0778 1.2906 32 1 0.9243 -4.3706 1.9878 33 1 2.6490 -4.7622 2.2897 34 1 2.3978 -4.5309 4.6780 35 1 0.7959 -5.2150 4.2426 36 1 0.9048 -2.8536 5.5567 37 1 -0.2448 -3.0478 4.1981 38 1 -0.1126 -0.6926 6.7564 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932172947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:17 Heat of formation + Delta-G solvation = -49.587914 kcal Electronic energy + Delta-G solvation = -17139.368727 eV Core-core repulsion = 14595.649227 eV Total energy + Delta-G solvation = -2543.719500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13510 -38.70988 -34.59019 -34.14766 -31.18736 -30.53646 -28.35202 -28.25114 -26.59099 -25.14314 -21.94243 -21.04020 -20.64398 -18.72662 -17.34689 -17.22119 -16.37512 -15.97598 -15.61620 -15.34039 -14.75255 -14.34990 -13.76209 -13.65871 -13.42731 -13.30280 -13.14189 -12.89163 -12.75976 -12.74573 -12.65757 -12.57296 -12.12059 -11.96448 -11.78952 -11.60446 -11.43620 -11.37118 -11.12130 -10.64416 -10.19832 -8.78618 -7.66842 -5.07681 1.44255 1.45703 1.54926 2.55210 2.91723 3.43927 3.74230 3.94247 3.99156 4.06193 4.16425 4.26367 4.30764 4.49236 4.55937 4.66295 4.67743 4.71006 4.81873 4.87087 4.91329 4.94671 4.96716 5.01386 5.12222 5.14835 5.24887 5.40115 5.42283 5.55089 5.66368 5.77930 5.89831 6.40142 6.65522 7.24529 7.91801 8.53508 9.35826 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.012464 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.808800 B = 2245.899747 C = 3414.797628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 C -0.134 4.134 4 C -0.166 4.166 5 O -0.388 6.388 6 C 0.065 3.935 7 C 0.147 3.853 8 H 0.029 0.971 9 C -0.110 4.110 10 C -0.133 4.133 11 C 0.148 3.852 12 N -0.610 5.610 13 C -0.192 4.192 14 H 0.081 0.919 15 C -0.080 4.080 16 N -0.957 5.957 17 Si 0.967 3.033 18 H -0.292 1.292 19 H -0.295 1.295 20 H -0.273 1.273 21 H 0.034 0.966 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.070 0.930 37 H -0.018 1.018 38 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -2.710 -13.859 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.191 4.191 4 C -0.223 4.223 5 O -0.308 6.308 6 C -0.014 4.014 7 C 0.040 3.960 8 H 0.047 0.953 9 C -0.148 4.148 10 C -0.171 4.171 11 C 0.023 3.977 12 N -0.334 5.334 13 C -0.322 4.322 14 H 0.099 0.901 15 C -0.271 4.271 16 N -0.610 5.610 17 Si 0.797 3.203 18 H -0.220 1.220 19 H -0.222 1.222 20 H -0.199 1.199 21 H 0.054 0.946 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.000 1.000 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.538 -2.467 -13.576 14.030 hybrid contribution -0.522 1.002 0.559 1.260 sum 2.016 -1.465 -13.018 13.254 Atomic orbital electron populations 1.22335 0.96255 1.01946 1.02075 1.21735 0.93180 0.93849 0.86195 1.21752 1.01606 0.93382 1.02372 1.22324 1.01810 1.00904 0.97256 1.88090 1.74087 1.24932 1.43660 1.23048 0.97444 0.82858 0.98017 1.21299 0.95588 0.92766 0.86330 0.95292 1.22533 1.02331 0.93102 0.96810 1.22897 1.00574 0.97591 0.96037 1.21770 0.91335 0.86276 0.98294 1.44849 1.58792 1.05029 1.24734 1.19456 1.24289 0.84419 1.04009 0.90117 1.25487 1.01532 1.01414 0.98657 1.70056 1.40439 1.33578 1.16885 0.85209 0.77672 0.80951 0.76453 1.21985 1.22197 1.19860 0.94650 0.89468 0.92921 0.92086 0.88729 0.94131 0.92245 0.89678 0.91984 0.91859 0.95358 0.90565 0.88510 0.92005 0.89689 0.91195 0.99956 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 8.25 71.98 0.59 -4.54 16 2 C 0.09 2.77 1.14 -10.79 -0.01 2.76 16 3 C -0.13 -3.77 8.84 71.99 0.64 -3.14 16 4 C -0.17 -3.87 8.25 71.98 0.59 -3.28 16 5 O -0.39 -15.76 8.11 -148.98 -1.21 -16.97 16 6 C 0.06 2.44 4.56 71.98 0.33 2.77 16 7 C 0.15 6.17 3.46 45.34 0.16 6.33 16 8 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 9 C -0.11 -3.61 6.50 31.87 0.21 -3.40 16 10 C -0.13 -4.95 7.09 32.07 0.23 -4.72 16 11 C 0.15 7.56 5.89 86.85 0.51 8.08 16 12 N -0.61 -32.36 3.13 -668.27 -2.09 -34.45 16 13 C -0.19 -11.26 9.48 84.04 0.80 -10.46 16 14 H 0.08 4.76 6.67 -2.91 -0.02 4.74 16 15 C -0.08 -4.81 5.49 84.86 0.47 -4.34 16 16 N -0.96 -59.66 10.09 21.65 0.22 -59.45 16 17 Si 0.97 48.82 29.55 68.60 2.03 50.85 16 18 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 19 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 20 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 21 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.05 1.61 6.54 -2.39 -0.02 1.60 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.35 6.54 -2.39 -0.02 1.34 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.94 6.42 -2.39 -0.02 1.93 16 31 H 0.03 1.15 6.42 -2.39 -0.02 1.13 16 32 H 0.08 2.28 7.85 -2.39 -0.02 2.26 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.08 2.69 8.14 -2.38 -0.02 2.68 16 36 H 0.07 4.09 5.87 -2.38 -0.01 4.08 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -69.19 293.47 4.46 -64.73 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.00 Total: 9.23 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.51 Total: -13.96 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -1.87 Total: -93.89 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.21 Total: -16.97 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.85 kcal Total: -69.19 4.46 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932172947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.146 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds