Wall clock time and date at job start Sun Mar 29 2020 21:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 H 1.08997 * 109.48354 * 305.02084 * 3 2 1 5 5 C 1.53097 * 109.48046 * 185.00202 * 3 2 1 6 6 C 1.53174 * 109.16185 * 182.39976 * 5 3 2 7 7 H 1.08995 * 109.54500 * 297.10556 * 6 5 3 8 8 N 1.46906 * 109.61479 * 176.89163 * 6 5 3 9 9 C 1.46903 * 111.00110 * 155.39988 * 8 6 5 10 10 C 1.52995 * 109.46732 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46849 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00075 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00261 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46875 * 60.00886 * 15 13 11 17 17 H 1.48494 * 109.46932 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47174 * 300.00730 * 15 13 11 19 19 C 1.53176 * 109.04061 * 56.97999 * 6 5 3 20 20 C 1.53091 * 109.21206 * 302.98570 * 19 6 5 21 21 O 1.42902 * 109.49280 * 65.05209 * 3 2 1 22 22 H 1.09001 * 109.47300 * 300.00085 * 1 2 3 23 23 H 1.09002 * 109.47316 * 59.99896 * 1 2 3 24 24 H 1.09005 * 109.46943 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47300 * 239.99915 * 2 1 3 26 26 H 1.09002 * 109.47316 * 120.00104 * 2 1 3 27 27 H 1.08995 * 109.52587 * 62.48829 * 5 3 2 28 28 H 1.09004 * 109.57034 * 302.33329 * 5 3 2 29 29 H 1.00901 * 110.99518 * 279.35021 * 8 6 5 30 30 H 1.09002 * 109.46758 * 299.99629 * 9 8 6 31 31 H 1.08999 * 109.46975 * 59.99783 * 9 8 6 32 32 H 1.09002 * 109.47352 * 299.99456 * 10 9 8 33 33 H 1.08999 * 109.47412 * 60.00242 * 10 9 8 34 34 H 0.96998 * 120.00535 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.52410 * 62.92413 * 19 6 5 36 36 H 1.09004 * 109.52533 * 183.05059 * 19 6 5 37 37 H 1.09007 * 109.48127 * 177.62276 * 20 19 6 38 38 H 1.09000 * 109.48171 * 297.66002 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5657 1.4447 -0.1258 6 6 4.0732 2.8886 -0.0648 7 1 3.6790 3.4498 -0.9120 8 7 5.5415 2.8976 -0.1099 9 6 6.0445 4.1763 -0.6295 10 6 7.5738 4.1478 -0.6609 11 6 8.0898 5.4594 -1.1945 12 1 7.3962 6.2357 -1.4820 13 6 9.4473 5.6686 -1.3146 14 7 10.2919 4.7235 -0.9640 15 14 10.0868 7.2942 -1.9767 16 1 9.6297 8.4006 -1.0981 17 1 11.5712 7.2666 -2.0071 18 1 9.5678 7.5071 -3.3516 19 6 3.5968 3.5309 1.2416 20 6 2.0698 3.4496 1.3155 21 8 1.6631 2.0815 1.2214 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8534 0.9973 -1.0772 28 1 4.0004 0.8709 0.6927 29 1 5.9324 2.6976 0.7986 30 1 5.6629 4.3338 -1.6383 31 1 5.7097 4.9879 0.0165 32 1 7.9551 3.9905 0.3481 33 1 7.9090 3.3362 -1.3066 34 1 11.2470 4.8706 -1.0488 35 1 4.0312 2.9996 2.0884 36 1 3.9076 4.5753 1.2687 37 1 1.7289 3.8675 2.2627 38 1 1.6354 4.0151 0.4911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170177457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:44 Heat of formation + Delta-G solvation = -76.706254 kcal Electronic energy + Delta-G solvation = -15914.986379 eV Core-core repulsion = 13370.090940 eV Total energy + Delta-G solvation = -2544.895439 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62417 -36.21556 -34.02917 -33.32410 -31.50791 -29.84771 -28.43041 -24.92522 -23.68840 -23.18321 -21.13783 -20.70966 -19.99400 -16.49444 -16.38119 -16.01009 -15.08912 -14.64148 -14.47373 -14.27177 -13.82703 -13.71017 -13.45476 -12.89439 -12.66144 -12.09225 -11.87404 -11.73781 -11.26902 -11.18849 -11.11934 -10.98740 -10.89578 -10.77103 -10.57956 -10.22780 -9.99269 -9.64443 -9.30213 -9.11738 -8.35805 -7.79593 -6.00131 -4.03045 3.32838 3.37245 3.39483 3.73632 4.38345 4.51858 4.82781 4.87849 4.91804 5.05292 5.15692 5.22950 5.29425 5.35574 5.41409 5.47176 5.67531 5.71793 5.79078 5.83944 5.92838 5.96455 6.07106 6.16751 6.23215 6.30845 6.37597 6.44743 6.96520 7.23080 7.48330 7.72206 7.81800 7.95028 8.07906 8.42763 9.03992 9.60700 11.11265 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061473 B = 0.004313 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.375487 B = 6490.853034 C = 6682.134894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.055 0.945 5 C -0.136 4.136 6 C 0.086 3.914 7 H 0.072 0.928 8 N -0.685 5.685 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.186 4.186 20 C 0.068 3.932 21 O -0.381 6.381 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.337 0.663 30 H 0.057 0.943 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.537 -6.400 3.176 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.032 3.968 4 H 0.073 0.927 5 C -0.175 4.175 6 C -0.025 4.025 7 H 0.091 0.909 8 N -0.314 5.314 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.226 4.226 20 C -0.010 4.010 21 O -0.300 6.300 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.155 0.845 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.385 -6.851 2.701 18.880 hybrid contribution 0.540 1.747 0.227 1.843 sum -16.846 -5.103 2.928 17.843 Atomic orbital electron populations 1.21722 0.95516 1.01289 1.02138 1.21537 0.96374 0.94571 1.02795 1.22177 0.94035 0.93756 0.86839 0.92691 1.22215 0.94471 0.97377 1.03402 1.21584 0.89805 0.95292 0.95836 0.90934 1.60677 1.04089 1.35497 1.31169 1.22183 0.99407 0.86871 0.97749 1.19066 0.87573 0.97233 0.97359 1.21140 0.91658 1.00265 1.43120 0.92846 1.25005 0.97048 0.96744 0.95543 1.69960 1.02362 1.32912 1.48011 0.86643 0.77672 0.84046 0.79540 1.20291 1.21244 1.20212 1.22969 0.97065 1.02368 1.00183 1.22489 0.93834 0.82999 1.01648 1.87898 1.78663 1.24701 1.38782 0.92052 0.93047 0.92948 0.90584 0.91152 0.90392 0.91143 0.84510 0.92469 0.96668 0.96836 0.95670 0.92909 0.91015 0.90882 0.89205 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 37.16 0.36 -0.95 16 2 C -0.12 -1.12 5.64 -26.73 -0.15 -1.28 16 3 C 0.09 1.04 2.64 -26.68 -0.07 0.96 16 4 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 5 C -0.14 -1.76 5.03 -26.59 -0.13 -1.90 16 6 C 0.09 1.26 2.55 -67.53 -0.17 1.08 16 7 H 0.07 1.09 7.81 -51.93 -0.41 0.69 16 8 N -0.69 -12.32 6.26 -106.53 -0.67 -12.98 16 9 C 0.07 1.40 5.43 -3.83 -0.02 1.38 16 10 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 11 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 12 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.19 -2.45 5.39 -26.59 -0.14 -2.59 16 20 C 0.07 0.78 6.86 37.20 0.26 1.04 16 21 O -0.38 -4.82 9.95 -35.23 -0.35 -5.17 16 22 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.34 5.94 8.45 -39.29 -0.33 5.61 16 30 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 31 H 0.02 0.31 7.50 -51.93 -0.39 -0.07 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.07 1.00 7.54 -51.93 -0.39 0.60 16 37 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -30.10 304.39 -8.30 -38.40 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.96 Total: 0.25 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.63 Total: -15.44 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.07 Total: -39.38 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.35 Total: -5.17 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.10 -8.30 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170177457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.309 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds