Wall clock time and date at job start Sun Mar 29 2020 21:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 H 1.08997 * 109.48354 * 305.02084 * 3 2 1 5 5 C 1.53097 * 109.48046 * 185.00202 * 3 2 1 6 6 C 1.53174 * 109.16185 * 182.39976 * 5 3 2 7 7 H 1.08995 * 109.54500 * 297.10556 * 6 5 3 8 8 N 1.46906 * 109.61479 * 176.89163 * 6 5 3 9 9 C 1.46903 * 111.00110 * 155.39988 * 8 6 5 10 10 C 1.52995 * 109.46732 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46849 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99789 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00075 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00261 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46875 * 60.00886 * 15 13 11 17 17 H 1.48494 * 109.46932 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47174 * 300.00730 * 15 13 11 19 19 C 1.53176 * 109.04061 * 56.97999 * 6 5 3 20 20 C 1.53091 * 109.21206 * 302.98570 * 19 6 5 21 21 O 1.42902 * 109.49280 * 65.05209 * 3 2 1 22 22 H 1.09001 * 109.47300 * 300.00085 * 1 2 3 23 23 H 1.09002 * 109.47316 * 59.99896 * 1 2 3 24 24 H 1.09005 * 109.46943 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47300 * 239.99915 * 2 1 3 26 26 H 1.09002 * 109.47316 * 120.00104 * 2 1 3 27 27 H 1.08995 * 109.52587 * 62.48829 * 5 3 2 28 28 H 1.09004 * 109.57034 * 302.33329 * 5 3 2 29 29 H 1.00901 * 110.99518 * 279.35021 * 8 6 5 30 30 H 1.09002 * 109.46758 * 299.99629 * 9 8 6 31 31 H 1.08999 * 109.46975 * 59.99783 * 9 8 6 32 32 H 1.09002 * 109.47352 * 299.99456 * 10 9 8 33 33 H 1.08999 * 109.47412 * 60.00242 * 10 9 8 34 34 H 0.96998 * 120.00535 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.52410 * 62.92413 * 19 6 5 36 36 H 1.09004 * 109.52533 * 183.05059 * 19 6 5 37 37 H 1.09007 * 109.48127 * 177.62276 * 20 19 6 38 38 H 1.09000 * 109.48171 * 297.66002 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5657 1.4447 -0.1258 6 6 4.0732 2.8886 -0.0648 7 1 3.6790 3.4498 -0.9120 8 7 5.5415 2.8976 -0.1099 9 6 6.0445 4.1763 -0.6295 10 6 7.5738 4.1478 -0.6609 11 6 8.0898 5.4594 -1.1945 12 1 7.3962 6.2357 -1.4820 13 6 9.4473 5.6686 -1.3146 14 7 10.2919 4.7235 -0.9640 15 14 10.0868 7.2942 -1.9767 16 1 9.6297 8.4006 -1.0981 17 1 11.5712 7.2666 -2.0071 18 1 9.5678 7.5071 -3.3516 19 6 3.5968 3.5309 1.2416 20 6 2.0698 3.4496 1.3155 21 8 1.6631 2.0815 1.2214 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8534 0.9973 -1.0772 28 1 4.0004 0.8709 0.6927 29 1 5.9324 2.6976 0.7986 30 1 5.6629 4.3338 -1.6383 31 1 5.7097 4.9879 0.0165 32 1 7.9551 3.9905 0.3481 33 1 7.9090 3.3362 -1.3066 34 1 11.2470 4.8706 -1.0488 35 1 4.0312 2.9996 2.0884 36 1 3.9076 4.5753 1.2687 37 1 1.7289 3.8675 2.2627 38 1 1.6354 4.0151 0.4911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170177457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:44 Heat of formation + Delta-G solvation = -96.197474 kcal Electronic energy + Delta-G solvation = -15915.831582 eV Core-core repulsion = 13370.090940 eV Total energy + Delta-G solvation = -2545.740642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65046 -37.61831 -35.30881 -34.85173 -33.16303 -30.76805 -30.16719 -26.51236 -24.92374 -24.35549 -22.59409 -21.94458 -21.22204 -18.52810 -17.41607 -17.13659 -16.55524 -16.32013 -15.83905 -15.44935 -15.03809 -14.68637 -14.50177 -14.39994 -14.08540 -13.75473 -13.19075 -12.88380 -12.72866 -12.64414 -12.48499 -12.30369 -12.14542 -12.04913 -11.76827 -11.64423 -11.51758 -11.38439 -11.04419 -10.57933 -10.46199 -9.26283 -8.21561 -6.33660 1.39588 1.43002 1.51009 2.39486 2.83993 3.11686 3.22000 3.75494 3.84251 3.97498 4.14877 4.19267 4.26468 4.39639 4.44257 4.49300 4.56275 4.60661 4.76813 4.81761 4.83818 4.93084 5.04468 5.08683 5.14854 5.16951 5.21351 5.31395 5.43150 5.48284 5.65368 5.77141 6.12560 6.25843 6.31096 6.49842 6.83444 7.35809 8.90454 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.061473 B = 0.004313 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.375487 B = 6490.853034 C = 6682.134894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.061 0.939 5 C -0.130 4.130 6 C 0.084 3.916 7 H 0.071 0.929 8 N -0.691 5.691 9 C 0.086 3.914 10 C 0.031 3.969 11 C -0.547 4.547 12 H 0.061 0.939 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.181 4.181 20 C 0.069 3.931 21 O -0.391 6.391 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.338 0.662 30 H 0.056 0.944 31 H 0.020 0.980 32 H -0.010 1.010 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.888 -5.661 2.864 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.168 4.168 6 C -0.026 4.026 7 H 0.089 0.911 8 N -0.321 5.321 9 C -0.043 4.043 10 C -0.006 4.006 11 C -0.585 4.585 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.220 4.220 20 C -0.008 4.008 21 O -0.310 6.310 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.766 -6.118 2.393 19.883 hybrid contribution 0.956 1.459 0.341 1.777 sum -17.810 -4.659 2.734 18.611 Atomic orbital electron populations 1.21693 0.94652 1.02103 1.01895 1.21561 0.97100 0.93363 1.03178 1.22242 0.92702 0.94928 0.86773 0.92060 1.22161 0.95737 0.95857 1.03089 1.21677 0.87436 0.96789 0.96737 0.91088 1.60601 1.06499 1.33615 1.31380 1.21783 0.95790 0.88633 0.98093 1.18922 0.91173 0.95519 0.94997 1.21589 0.92377 1.01213 1.43349 0.92097 1.25998 0.97332 1.00832 0.95613 1.70101 1.02775 1.35289 1.49031 0.85460 0.77014 0.79091 0.79231 1.19062 1.20782 1.19104 1.22886 0.98525 1.01691 0.98912 1.22566 0.92335 0.82842 1.03078 1.87902 1.78601 1.25209 1.39307 0.93004 0.92539 0.91661 0.89427 0.91588 0.90534 0.91727 0.84429 0.92538 0.96155 0.99133 0.98838 0.92693 0.91416 0.91383 0.87464 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.81 71.98 0.71 -1.57 16 2 C -0.11 -2.03 5.64 30.59 0.17 -1.85 16 3 C 0.09 1.95 2.64 30.63 0.08 2.03 16 4 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.13 -3.23 5.03 30.69 0.15 -3.07 16 6 C 0.08 2.38 2.55 45.03 0.11 2.50 16 7 H 0.07 2.06 7.81 -2.39 -0.02 2.04 16 8 N -0.69 -24.92 6.26 -490.96 -3.07 -27.99 16 9 C 0.09 3.65 5.43 86.30 0.47 4.12 16 10 C 0.03 1.70 5.23 29.85 0.16 1.86 16 11 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 0.02 5.46 84.66 0.46 0.48 16 14 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 C -0.18 -4.53 5.39 30.68 0.17 -4.37 16 20 C 0.07 1.45 6.86 72.01 0.49 1.94 16 21 O -0.39 -9.14 9.95 -148.98 -1.48 -10.62 16 22 H 0.05 0.91 7.83 -2.39 -0.02 0.89 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.34 12.07 8.45 -89.69 -0.76 11.31 16 30 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 31 H 0.02 0.84 7.50 -2.39 -0.02 0.82 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 36 H 0.07 1.78 7.54 -2.38 -0.02 1.76 16 37 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.10 304.39 1.21 -62.89 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.24 Total: 15.76 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.21 Total: -29.27 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.79 Total: -85.20 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.48 Total: -10.62 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.10 1.21 -62.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170177457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.306 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds