Wall clock time and date at job start Sun Mar 29 2020 21:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 H 1.09002 * 109.47903 * 55.00262 * 3 2 1 5 5 C 1.53092 * 109.47697 * 175.02588 * 3 2 1 6 6 C 1.53207 * 109.14859 * 177.59587 * 5 3 2 7 7 H 1.09004 * 109.54239 * 183.15817 * 6 5 3 8 8 N 1.46898 * 109.61727 * 62.93624 * 6 5 3 9 9 C 1.46900 * 111.00211 * 155.39260 * 8 6 5 10 10 C 1.53001 * 109.47166 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47101 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99885 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00045 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00346 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47072 * 59.99829 * 15 13 11 17 17 H 1.48500 * 109.47217 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46608 * 300.00229 * 15 13 11 19 19 C 1.53178 * 109.03992 * 303.02293 * 6 5 3 20 20 C 1.53097 * 109.16320 * 56.98185 * 19 6 5 21 21 O 1.42898 * 109.41490 * 302.39102 * 20 19 6 22 22 H 1.08998 * 109.47256 * 59.99679 * 1 2 3 23 23 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47101 * 299.99545 * 1 2 3 25 25 H 1.09001 * 109.47101 * 240.00455 * 2 1 3 26 26 H 1.08998 * 109.47256 * 120.00321 * 2 1 3 27 27 H 1.08999 * 109.52366 * 297.50656 * 5 3 2 28 28 H 1.08992 * 109.52532 * 57.70335 * 5 3 2 29 29 H 1.00904 * 110.99538 * 31.43909 * 8 6 5 30 30 H 1.08997 * 109.47133 * 300.00059 * 9 8 6 31 31 H 1.09000 * 109.46866 * 60.00133 * 9 8 6 32 32 H 1.08998 * 109.47053 * 300.00563 * 10 9 8 33 33 H 1.09000 * 109.47191 * 60.00245 * 10 9 8 34 34 H 0.96993 * 119.99908 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.52669 * 297.07816 * 19 6 5 36 36 H 1.08997 * 109.52447 * 176.88713 * 19 6 5 37 37 H 1.08995 * 109.47859 * 182.40411 * 20 19 6 38 38 H 1.09000 * 109.48591 * 62.37596 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5658 1.4445 0.1251 6 6 4.0731 2.8888 0.0639 7 1 5.1627 2.8942 0.0961 8 7 3.5440 3.6462 1.2060 9 6 4.4096 4.7891 1.5263 10 6 3.8277 5.5513 2.7184 11 6 4.7153 6.7241 3.0466 12 1 5.6053 6.9076 2.4630 13 6 4.3908 7.5633 4.0912 14 7 3.3062 7.3406 4.8011 15 14 5.4906 9.0174 4.4976 16 1 5.5700 9.9217 3.3224 17 1 4.9258 9.7572 5.6548 18 1 6.8509 8.5289 4.8391 19 6 3.5959 3.5312 -1.2422 20 6 2.0689 3.4483 -1.3144 21 8 1.6624 2.0815 -1.2212 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8538 0.9971 1.0764 28 1 3.9992 0.8713 -0.6943 29 1 3.4211 3.0491 2.0101 30 1 5.4076 4.4298 1.7773 31 1 4.4687 5.4530 0.6638 32 1 2.8295 5.9104 2.4678 33 1 3.7689 4.8872 3.5807 34 1 3.0780 7.9308 5.5362 35 1 4.0300 3.0000 -2.0893 36 1 3.9056 4.5759 -1.2688 37 1 1.7266 3.8656 -2.2614 38 1 1.6346 4.0137 -0.4899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170177458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:46 Heat of formation + Delta-G solvation = -74.803436 kcal Electronic energy + Delta-G solvation = -16217.230307 eV Core-core repulsion = 13672.417380 eV Total energy + Delta-G solvation = -2544.812927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54043 -35.95775 -33.87499 -33.30245 -31.46831 -29.74905 -28.27892 -24.88509 -23.69591 -23.51875 -21.20538 -20.51089 -19.23246 -16.29519 -16.24018 -15.97104 -15.31453 -14.60631 -14.43013 -14.32793 -13.66713 -13.53323 -13.05803 -12.88073 -12.44941 -12.20579 -11.76954 -11.66898 -11.47478 -11.14177 -11.05349 -10.94009 -10.85260 -10.56929 -10.38409 -10.13443 -9.94855 -9.37113 -9.18963 -9.16227 -8.35961 -7.82537 -6.00672 -4.03484 3.32577 3.37058 3.39326 3.98194 4.41939 4.64097 4.77111 4.97264 5.09876 5.18132 5.26245 5.35223 5.37654 5.50461 5.56020 5.72693 5.76897 5.89118 5.93034 6.01474 6.05876 6.10943 6.16930 6.24975 6.28498 6.35804 6.42606 6.45691 6.97151 7.46584 7.49689 7.71140 7.80590 7.93857 8.06963 8.42404 9.03561 9.60407 11.10696 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.005056 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.729434 B = 5536.648963 C = 5770.439103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.096 3.904 4 H 0.069 0.931 5 C -0.149 4.149 6 C 0.081 3.919 7 H 0.041 0.959 8 N -0.686 5.686 9 C 0.067 3.933 10 C 0.026 3.974 11 C -0.523 4.523 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.141 4.141 20 C 0.070 3.930 21 O -0.385 6.385 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.336 0.664 30 H 0.014 0.986 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -12.730 -10.185 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.039 3.961 4 H 0.087 0.913 5 C -0.188 4.188 6 C -0.029 4.029 7 H 0.059 0.941 8 N -0.318 5.318 9 C -0.062 4.062 10 C -0.011 4.011 11 C -0.562 4.562 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.179 4.179 20 C -0.007 4.007 21 O -0.304 6.304 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.154 0.846 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.685 -12.380 -10.564 16.494 hybrid contribution 1.661 0.613 0.929 1.999 sum -1.024 -11.767 -9.635 15.243 Atomic orbital electron populations 1.21706 0.95389 1.01057 1.02472 1.21563 0.96683 0.95018 1.02149 1.22016 0.92913 0.93246 0.87970 0.91286 1.22383 0.97391 0.96657 1.02327 1.21524 0.96722 0.91971 0.92688 0.94087 1.60647 1.51296 1.11609 1.08240 1.22194 0.92775 0.91020 1.00164 1.19054 0.96817 0.94177 0.91070 1.21135 1.09094 1.11022 1.14907 0.92872 1.24995 0.95243 0.97843 0.96196 1.69962 1.24676 1.38395 1.20222 0.86652 0.80761 0.82663 0.77874 1.20216 1.21242 1.20309 1.22123 0.97521 1.01669 0.96591 1.22433 0.93721 0.82701 1.01818 1.87812 1.78822 1.25288 1.38479 0.92002 0.93195 0.92745 0.91635 0.90988 0.91258 0.91131 0.84603 0.96732 0.92398 0.95707 0.96889 0.92925 0.91946 0.90860 0.90024 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.81 37.16 0.36 -1.18 16 2 C -0.12 -1.25 5.64 -26.73 -0.15 -1.40 16 3 C 0.10 1.25 2.48 -26.68 -0.07 1.18 16 4 H 0.07 0.99 7.75 -51.93 -0.40 0.59 16 5 C -0.15 -1.87 4.81 -26.58 -0.13 -1.99 16 6 C 0.08 1.19 2.84 -67.52 -0.19 1.00 16 7 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 8 N -0.69 -11.93 5.11 -106.52 -0.54 -12.47 16 9 C 0.07 1.39 5.43 -3.82 -0.02 1.37 16 10 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C -0.14 -1.97 5.74 -26.59 -0.15 -2.12 16 20 C 0.07 0.98 6.68 37.21 0.25 1.23 16 21 O -0.38 -5.53 9.94 -35.23 -0.35 -5.88 16 22 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.34 5.69 8.33 -39.29 -0.33 5.37 16 30 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 31 H 0.06 1.22 7.40 -51.93 -0.38 0.83 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.08 7.40 -51.93 -0.38 0.69 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -29.69 302.16 -8.18 -37.87 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.90 Total: 0.43 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.65 Total: -14.96 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.19 Total: -38.69 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.35 Total: -5.88 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.69 -8.18 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170177458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.937 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds