Wall clock time and date at job start Sun Mar 29 2020 21:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 H 1.09002 * 109.47903 * 55.00262 * 3 2 1 5 5 C 1.53092 * 109.47697 * 175.02588 * 3 2 1 6 6 C 1.53207 * 109.14859 * 177.59587 * 5 3 2 7 7 H 1.09004 * 109.54239 * 183.15817 * 6 5 3 8 8 N 1.46898 * 109.61727 * 62.93624 * 6 5 3 9 9 C 1.46900 * 111.00211 * 155.39260 * 8 6 5 10 10 C 1.53001 * 109.47166 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47101 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99885 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00045 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00346 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47072 * 59.99829 * 15 13 11 17 17 H 1.48500 * 109.47217 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46608 * 300.00229 * 15 13 11 19 19 C 1.53178 * 109.03992 * 303.02293 * 6 5 3 20 20 C 1.53097 * 109.16320 * 56.98185 * 19 6 5 21 21 O 1.42898 * 109.41490 * 302.39102 * 20 19 6 22 22 H 1.08998 * 109.47256 * 59.99679 * 1 2 3 23 23 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47101 * 299.99545 * 1 2 3 25 25 H 1.09001 * 109.47101 * 240.00455 * 2 1 3 26 26 H 1.08998 * 109.47256 * 120.00321 * 2 1 3 27 27 H 1.08999 * 109.52366 * 297.50656 * 5 3 2 28 28 H 1.08992 * 109.52532 * 57.70335 * 5 3 2 29 29 H 1.00904 * 110.99538 * 31.43909 * 8 6 5 30 30 H 1.08997 * 109.47133 * 300.00059 * 9 8 6 31 31 H 1.09000 * 109.46866 * 60.00133 * 9 8 6 32 32 H 1.08998 * 109.47053 * 300.00563 * 10 9 8 33 33 H 1.09000 * 109.47191 * 60.00245 * 10 9 8 34 34 H 0.96993 * 119.99908 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.52669 * 297.07816 * 19 6 5 36 36 H 1.08997 * 109.52447 * 176.88713 * 19 6 5 37 37 H 1.08995 * 109.47859 * 182.40411 * 20 19 6 38 38 H 1.09000 * 109.48591 * 62.37596 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5658 1.4445 0.1251 6 6 4.0731 2.8888 0.0639 7 1 5.1627 2.8942 0.0961 8 7 3.5440 3.6462 1.2060 9 6 4.4096 4.7891 1.5263 10 6 3.8277 5.5513 2.7184 11 6 4.7153 6.7241 3.0466 12 1 5.6053 6.9076 2.4630 13 6 4.3908 7.5633 4.0912 14 7 3.3062 7.3406 4.8011 15 14 5.4906 9.0174 4.4976 16 1 5.5700 9.9217 3.3224 17 1 4.9258 9.7572 5.6548 18 1 6.8509 8.5289 4.8391 19 6 3.5959 3.5312 -1.2422 20 6 2.0689 3.4483 -1.3144 21 8 1.6624 2.0815 -1.2212 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8538 0.9971 1.0764 28 1 3.9992 0.8713 -0.6943 29 1 3.4211 3.0491 2.0101 30 1 5.4076 4.4298 1.7773 31 1 4.4687 5.4530 0.6638 32 1 2.8295 5.9104 2.4678 33 1 3.7689 4.8872 3.5807 34 1 3.0780 7.9308 5.5362 35 1 4.0300 3.0000 -2.0893 36 1 3.9056 4.5759 -1.2688 37 1 1.7266 3.8656 -2.2614 38 1 1.6346 4.0137 -0.4899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170177458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:46 Heat of formation + Delta-G solvation = -93.509902 kcal Electronic energy + Delta-G solvation = -16218.041480 eV Core-core repulsion = 13672.417380 eV Total energy + Delta-G solvation = -2545.624100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66582 -37.38712 -35.26565 -34.81912 -33.13771 -30.79103 -30.01597 -26.40106 -25.23657 -24.62951 -22.43425 -22.11323 -20.43541 -18.46643 -17.29758 -17.06920 -16.79672 -16.39034 -15.76095 -15.66728 -14.94918 -14.57577 -14.34116 -14.28435 -14.00192 -13.55839 -13.19805 -13.08544 -12.84216 -12.64463 -12.46923 -12.37593 -12.05263 -12.00718 -11.77212 -11.48864 -11.41186 -11.29508 -10.98206 -10.57722 -10.33854 -9.25591 -8.21147 -6.32894 1.39703 1.42771 1.50819 2.39768 2.94586 3.12329 3.29707 3.71176 3.92102 4.00127 4.16592 4.30980 4.35510 4.49395 4.52042 4.55819 4.64252 4.69933 4.74689 4.89998 4.95432 4.99087 5.05976 5.11145 5.13426 5.18519 5.20933 5.35952 5.44648 5.49172 5.66216 5.78144 6.13237 6.26912 6.41237 6.52690 6.84295 7.36595 8.90761 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.005056 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.729434 B = 5536.648963 C = 5770.439103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.092 3.908 4 H 0.048 0.952 5 C -0.142 4.142 6 C 0.078 3.922 7 H 0.043 0.957 8 N -0.688 5.688 9 C 0.087 3.913 10 C 0.034 3.966 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.138 4.138 20 C 0.071 3.929 21 O -0.391 6.391 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.338 0.662 30 H 0.017 0.983 31 H 0.056 0.944 32 H -0.007 1.007 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -13.398 -11.003 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.034 3.966 4 H 0.066 0.934 5 C -0.180 4.180 6 C -0.032 4.032 7 H 0.061 0.939 8 N -0.320 5.320 9 C -0.042 4.042 10 C -0.004 4.004 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.177 4.177 20 C -0.006 4.006 21 O -0.311 6.311 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.156 0.844 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.541 -13.066 -11.399 17.408 hybrid contribution 1.253 0.780 1.174 1.886 sum -0.288 -12.286 -10.224 15.987 Atomic orbital electron populations 1.21695 0.95368 1.01964 1.01528 1.21575 0.96705 0.93441 1.03292 1.22125 0.93322 0.94290 0.86820 0.93353 1.22344 0.96856 0.95136 1.03645 1.21644 0.96839 0.93123 0.91583 0.93892 1.60551 1.50775 1.11463 1.09216 1.21783 0.92822 0.91820 0.97762 1.18897 0.95246 0.93937 0.92312 1.21581 1.09639 1.11956 1.15288 0.92246 1.25961 0.96699 1.00985 0.95945 1.70100 1.26519 1.39741 1.20789 0.85490 0.78872 0.78736 0.77873 1.19183 1.20768 1.19134 1.22116 0.97362 1.01290 0.96885 1.22408 0.93819 0.82615 1.01711 1.87813 1.79076 1.25139 1.39037 0.93226 0.91365 0.93424 0.90849 0.89379 0.90129 0.89461 0.84367 0.96501 0.92529 0.98861 0.99116 0.92729 0.89956 0.91882 0.88310 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.81 71.98 0.71 -2.18 16 2 C -0.11 -2.18 5.64 30.59 0.17 -2.01 16 3 C 0.09 2.27 2.48 30.62 0.08 2.35 16 4 H 0.05 1.39 7.75 -2.39 -0.02 1.37 16 5 C -0.14 -3.24 4.81 30.69 0.15 -3.10 16 6 C 0.08 2.18 2.84 45.04 0.13 2.30 16 7 H 0.04 1.21 7.81 -2.38 -0.02 1.20 16 8 N -0.69 -23.96 5.11 -490.91 -2.51 -26.47 16 9 C 0.09 3.66 5.43 86.30 0.47 4.12 16 10 C 0.03 1.80 5.23 29.85 0.16 1.95 16 11 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 15 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.14 -3.68 5.74 30.69 0.18 -3.50 16 20 C 0.07 1.96 6.68 72.01 0.48 2.44 16 21 O -0.39 -10.79 9.94 -148.98 -1.48 -12.27 16 22 H 0.05 1.07 7.82 -2.39 -0.02 1.06 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.34 11.52 8.33 -89.69 -0.75 10.77 16 30 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 31 H 0.06 2.38 7.40 -2.39 -0.02 2.37 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.80 7.40 -2.39 -0.02 1.78 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.04 1.36 7.75 -2.39 -0.02 1.34 16 Total: -1.00 -63.67 302.16 1.79 -61.88 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.26 Total: 15.54 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.21 Total: -28.16 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.22 Total: -83.36 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.48 Total: -12.27 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.67 1.79 -61.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170177458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.632 kcal (2) G-P(sol) polarization free energy of solvation -63.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds