Wall clock time and date at job start Sun Mar 29 2020 21:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 H 1.08999 * 109.48382 * 54.97514 * 3 2 1 5 5 C 1.53092 * 109.48190 * 174.99740 * 3 2 1 6 6 C 1.53175 * 109.16243 * 177.60046 * 5 3 2 7 7 H 1.08994 * 109.54429 * 62.98081 * 6 5 3 8 8 N 1.46906 * 109.54336 * 183.15492 * 6 5 3 9 9 C 1.46898 * 110.99888 * 204.82404 * 8 6 5 10 10 H 1.08994 * 109.47465 * 324.99806 * 9 8 6 11 11 C 1.53000 * 109.47140 * 84.99977 * 9 8 6 12 12 C 1.50700 * 109.46579 * 205.00008 * 9 8 6 13 13 H 1.07990 * 120.00516 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99809 * 180.02562 * 12 9 8 15 15 N 1.31520 * 119.99886 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00301 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47091 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46992 * 119.99706 * 16 14 12 19 19 H 1.48500 * 109.47394 * 239.99926 * 16 14 12 20 20 C 1.53180 * 109.11076 * 303.06409 * 6 5 3 21 21 C 1.53107 * 109.15439 * 56.84787 * 20 6 5 22 22 O 1.42899 * 109.48958 * 302.52729 * 21 20 6 23 23 H 1.08999 * 109.46915 * 60.00227 * 1 2 3 24 24 H 1.08996 * 109.46953 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47101 * 300.00269 * 1 2 3 26 26 H 1.08997 * 109.47101 * 239.99731 * 2 1 3 27 27 H 1.08999 * 109.46915 * 119.99773 * 2 1 3 28 28 H 1.09006 * 109.51677 * 57.69610 * 5 3 2 29 29 H 1.08998 * 109.57286 * 297.54158 * 5 3 2 30 30 H 1.00902 * 110.99923 * 328.78346 * 8 6 5 31 31 H 1.08997 * 109.47119 * 179.97438 * 11 9 8 32 32 H 1.08994 * 109.46950 * 300.00235 * 11 9 8 33 33 H 1.09006 * 109.46704 * 59.99717 * 11 9 8 34 34 H 0.97000 * 120.00205 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.52074 * 176.84223 * 20 6 5 36 36 H 1.08995 * 109.52311 * 297.03294 * 20 6 5 37 37 H 1.09001 * 109.47772 * 182.49265 * 21 20 6 38 38 H 1.08999 * 109.41098 * 62.51087 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8415 5 6 3.5658 1.4446 0.1259 6 6 4.0733 2.8886 0.0648 7 1 3.6804 3.4493 0.9128 8 7 5.5417 2.8956 0.1089 9 6 6.0465 4.1715 0.6335 10 1 5.3965 4.9823 0.3045 11 6 6.0662 4.1222 2.1626 12 6 7.4436 4.4079 0.1204 13 1 7.9100 3.6828 -0.5299 14 6 8.1268 5.5497 0.4821 15 7 7.5594 6.4321 1.2753 16 14 9.8588 5.8425 -0.1532 17 1 10.2660 4.7085 -1.0211 18 1 9.8916 7.1026 -0.9383 19 1 10.7955 5.9496 0.9941 20 6 3.5969 3.5328 -1.2407 21 6 2.0699 3.4481 -1.3147 22 8 1.6632 2.0814 -1.2214 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9995 0.8711 -0.6933 29 1 3.8543 0.9969 1.0768 30 1 5.8909 2.1187 0.6498 31 1 6.4411 5.0687 2.5518 32 1 5.0557 3.9511 2.5336 33 1 6.7162 3.3113 2.4916 34 1 8.0398 7.2355 1.5295 35 1 3.9067 4.5776 -1.2655 36 1 4.0313 3.0028 -2.0882 37 1 1.7282 3.8654 -2.2619 38 1 1.6354 4.0137 -0.4905 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170195220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:00 Heat of formation + Delta-G solvation = -68.079019 kcal Electronic energy + Delta-G solvation = -16468.050484 eV Core-core repulsion = 13923.529150 eV Total energy + Delta-G solvation = -2544.521334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37844 -36.12696 -33.89719 -33.17465 -30.95863 -29.66083 -27.45387 -25.15297 -24.03968 -23.30358 -21.14497 -20.12567 -19.56051 -16.38136 -16.22760 -15.67930 -14.89817 -14.62598 -14.42971 -13.94569 -13.65945 -13.34819 -12.92184 -12.70299 -12.17099 -11.79297 -11.59981 -11.51573 -11.31990 -11.01978 -10.97194 -10.85504 -10.70371 -10.51262 -10.22574 -10.16353 -10.07537 -9.72282 -9.22644 -8.93339 -8.35841 -7.23519 -5.98077 -4.01063 3.31813 3.39556 3.45175 3.94255 4.43920 4.73745 4.99521 5.10309 5.19847 5.30119 5.33566 5.39691 5.47395 5.52606 5.64938 5.75241 5.87622 5.90936 6.00433 6.08086 6.11644 6.21941 6.29495 6.40113 6.57877 6.68613 6.78159 6.83041 7.11396 7.38677 7.44745 7.74124 7.90680 8.29068 8.55679 8.63684 9.06910 9.64445 11.09042 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053334 B = 0.005567 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.867914 B = 5028.435254 C = 5138.572893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.053 0.947 5 C -0.150 4.150 6 C 0.088 3.912 7 H 0.034 0.966 8 N -0.679 5.679 9 C 0.211 3.789 10 H 0.033 0.967 11 C -0.169 4.169 12 C -0.493 4.493 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.140 4.140 21 C 0.063 3.937 22 O -0.381 6.381 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.325 0.675 31 H 0.089 0.911 32 H 0.003 0.997 33 H 0.027 0.973 34 H 0.258 0.742 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 -8.845 -1.266 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.071 0.929 5 C -0.188 4.188 6 C -0.023 4.023 7 H 0.051 0.949 8 N -0.309 5.309 9 C 0.103 3.897 10 H 0.051 0.949 11 C -0.228 4.228 12 C -0.532 4.532 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.179 4.179 21 C -0.014 4.014 22 O -0.301 6.301 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.022 0.978 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.466 -8.573 -1.993 14.455 hybrid contribution 0.983 0.444 0.994 1.467 sum -10.483 -8.129 -0.998 13.304 Atomic orbital electron populations 1.21716 0.95550 1.01163 1.02186 1.21541 0.96372 0.94774 1.02596 1.22082 0.93752 0.93549 0.87080 0.92921 1.22411 0.95615 0.98190 1.02553 1.21412 0.90994 0.93842 0.96037 0.94851 1.60834 1.04329 1.06830 1.58895 1.19205 0.95580 0.85729 0.89184 0.94872 1.22438 0.96152 1.03242 1.00994 1.21207 0.98800 1.04928 1.28243 0.91924 1.24959 0.98217 0.96093 0.95334 1.69896 1.37467 1.10624 1.35862 0.86460 0.84437 0.78062 0.78559 1.19738 1.21155 1.21231 1.22185 0.94273 1.02364 0.99057 1.22602 0.94926 0.82496 1.01402 1.87850 1.78647 1.25092 1.38491 0.91964 0.93045 0.93101 0.91135 0.90868 0.90481 0.91603 0.85757 0.89273 0.97773 0.95381 0.93167 0.90701 0.90755 0.89160 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.81 37.16 0.36 -1.12 16 2 C -0.12 -1.28 5.64 -26.73 -0.15 -1.43 16 3 C 0.09 1.26 2.64 -26.68 -0.07 1.19 16 4 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -2.23 4.69 -26.59 -0.12 -2.35 16 6 C 0.09 1.58 2.38 -67.53 -0.16 1.42 16 7 H 0.03 0.64 7.12 -51.93 -0.37 0.27 16 8 N -0.68 -14.48 6.04 -100.76 -0.61 -15.08 16 9 C 0.21 5.30 2.39 -68.87 -0.16 5.14 16 10 H 0.03 0.92 7.16 -51.93 -0.37 0.55 16 11 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 12 C -0.49 -13.72 8.84 -34.44 -0.30 -14.02 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.05 1.51 5.30 -17.81 -0.09 1.42 16 15 N -0.90 -25.81 11.32 55.43 0.63 -25.18 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.14 -2.42 5.62 -26.58 -0.15 -2.57 16 21 C 0.06 0.91 6.84 37.21 0.25 1.16 16 22 O -0.38 -5.66 9.95 -35.23 -0.35 -6.01 16 23 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.33 6.61 8.11 -39.29 -0.32 6.29 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 32 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 33 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -28.66 298.12 -7.88 -36.54 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.75 Total: 3.58 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.27 Total: -14.92 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.02 Total: -40.27 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.35 Total: -6.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.66 -7.88 -36.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170195220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.539 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds