Wall clock time and date at job start Sun Mar 29 2020 21:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 H 1.08999 * 109.48382 * 54.97514 * 3 2 1 5 5 C 1.53092 * 109.48190 * 174.99740 * 3 2 1 6 6 C 1.53175 * 109.16243 * 177.60046 * 5 3 2 7 7 H 1.08994 * 109.54429 * 62.98081 * 6 5 3 8 8 N 1.46906 * 109.54336 * 183.15492 * 6 5 3 9 9 C 1.46898 * 110.99888 * 204.82404 * 8 6 5 10 10 H 1.08994 * 109.47465 * 324.99806 * 9 8 6 11 11 C 1.53000 * 109.47140 * 84.99977 * 9 8 6 12 12 C 1.50700 * 109.46579 * 205.00008 * 9 8 6 13 13 H 1.07990 * 120.00516 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99809 * 180.02562 * 12 9 8 15 15 N 1.31520 * 119.99886 * 0.02562 * 14 12 9 16 16 Si 1.86793 * 120.00301 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47091 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46992 * 119.99706 * 16 14 12 19 19 H 1.48500 * 109.47394 * 239.99926 * 16 14 12 20 20 C 1.53180 * 109.11076 * 303.06409 * 6 5 3 21 21 C 1.53107 * 109.15439 * 56.84787 * 20 6 5 22 22 O 1.42899 * 109.48958 * 302.52729 * 21 20 6 23 23 H 1.08999 * 109.46915 * 60.00227 * 1 2 3 24 24 H 1.08996 * 109.46953 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47101 * 300.00269 * 1 2 3 26 26 H 1.08997 * 109.47101 * 239.99731 * 2 1 3 27 27 H 1.08999 * 109.46915 * 119.99773 * 2 1 3 28 28 H 1.09006 * 109.51677 * 57.69610 * 5 3 2 29 29 H 1.08998 * 109.57286 * 297.54158 * 5 3 2 30 30 H 1.00902 * 110.99923 * 328.78346 * 8 6 5 31 31 H 1.08997 * 109.47119 * 179.97438 * 11 9 8 32 32 H 1.08994 * 109.46950 * 300.00235 * 11 9 8 33 33 H 1.09006 * 109.46704 * 59.99717 * 11 9 8 34 34 H 0.97000 * 120.00205 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.52074 * 176.84223 * 20 6 5 36 36 H 1.08995 * 109.52311 * 297.03294 * 20 6 5 37 37 H 1.09001 * 109.47772 * 182.49265 * 21 20 6 38 38 H 1.08999 * 109.41098 * 62.51087 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8415 5 6 3.5658 1.4446 0.1259 6 6 4.0733 2.8886 0.0648 7 1 3.6804 3.4493 0.9128 8 7 5.5417 2.8956 0.1089 9 6 6.0465 4.1715 0.6335 10 1 5.3965 4.9823 0.3045 11 6 6.0662 4.1222 2.1626 12 6 7.4436 4.4079 0.1204 13 1 7.9100 3.6828 -0.5299 14 6 8.1268 5.5497 0.4821 15 7 7.5594 6.4321 1.2753 16 14 9.8588 5.8425 -0.1532 17 1 10.2660 4.7085 -1.0211 18 1 9.8916 7.1026 -0.9383 19 1 10.7955 5.9496 0.9941 20 6 3.5969 3.5328 -1.2407 21 6 2.0699 3.4481 -1.3147 22 8 1.6632 2.0814 -1.2214 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9995 0.8711 -0.6933 29 1 3.8543 0.9969 1.0768 30 1 5.8909 2.1187 0.6498 31 1 6.4411 5.0687 2.5518 32 1 5.0557 3.9511 2.5336 33 1 6.7162 3.3113 2.4916 34 1 8.0398 7.2355 1.5295 35 1 3.9067 4.5776 -1.2655 36 1 4.0313 3.0028 -2.0882 37 1 1.7282 3.8654 -2.2619 38 1 1.6354 4.0137 -0.4905 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170195220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:00 Heat of formation + Delta-G solvation = -86.274531 kcal Electronic energy + Delta-G solvation = -16468.839501 eV Core-core repulsion = 13923.529150 eV Total energy + Delta-G solvation = -2545.310351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61803 -37.80263 -35.03667 -34.86217 -32.74705 -30.77868 -29.15840 -27.25739 -25.23281 -24.57522 -22.46525 -21.66184 -21.04460 -18.39039 -17.35188 -16.97074 -16.80150 -16.17796 -15.71429 -15.43150 -14.82046 -14.54075 -14.47907 -14.10137 -13.75827 -13.50045 -13.11296 -12.90441 -12.70200 -12.66073 -12.47484 -12.29137 -12.09554 -12.07853 -11.96626 -11.73096 -11.47294 -11.12484 -10.98336 -10.50403 -10.43419 -8.99561 -8.10922 -6.21964 1.40877 1.42763 1.55149 2.43183 2.85380 3.17440 3.44572 3.74950 3.98574 4.00043 4.21414 4.25113 4.38103 4.41292 4.48774 4.61919 4.69484 4.73493 4.79917 4.85285 4.89251 4.98953 5.04249 5.14062 5.15758 5.19818 5.28795 5.34634 5.45745 5.48828 5.68055 5.82803 6.27060 6.31200 6.64601 6.83265 6.94255 7.48329 8.94852 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053334 B = 0.005567 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.867914 B = 5028.435254 C = 5138.572893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.140 4.140 6 C 0.085 3.915 7 H 0.022 0.978 8 N -0.683 5.683 9 C 0.217 3.783 10 H 0.001 0.999 11 C -0.156 4.156 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.008 3.992 15 N -0.923 5.923 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.279 1.279 20 C -0.137 4.137 21 C 0.070 3.930 22 O -0.387 6.387 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.332 0.668 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.983 -10.060 -1.259 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.178 4.178 6 C -0.025 4.025 7 H 0.040 0.960 8 N -0.313 5.313 9 C 0.109 3.891 10 H 0.019 0.981 11 C -0.215 4.215 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.176 4.176 21 C -0.008 4.008 22 O -0.307 6.307 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.972 -9.805 -1.987 15.602 hybrid contribution 1.108 0.817 0.992 1.697 sum -10.865 -8.988 -0.995 14.135 Atomic orbital electron populations 1.21694 0.94654 1.02182 1.01839 1.21559 0.97122 0.92936 1.03350 1.22234 0.92539 0.95143 0.86735 0.92562 1.22343 0.96757 0.95532 1.03175 1.21509 0.88885 0.96191 0.95915 0.95987 1.60717 1.06624 1.05354 1.58615 1.18935 0.93975 0.86537 0.89668 0.98076 1.22243 0.97217 1.01860 1.00223 1.21482 1.00164 1.05115 1.28500 0.92868 1.25719 1.01960 0.95814 0.95455 1.70017 1.38881 1.10925 1.36540 0.85466 0.79883 0.77901 0.78114 1.19380 1.20764 1.20511 1.22138 0.96648 1.00544 0.98272 1.22578 0.92506 0.82839 1.02835 1.87861 1.78459 1.25056 1.39289 0.93082 0.91389 0.92678 0.91343 0.89166 0.90862 0.90200 0.85059 0.91994 0.95847 0.94838 0.93019 0.93114 0.91728 0.87206 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.81 71.98 0.71 -1.83 16 2 C -0.11 -2.18 5.64 30.60 0.17 -2.01 16 3 C 0.09 2.27 2.64 30.63 0.08 2.35 16 4 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.14 -3.94 4.69 30.68 0.14 -3.80 16 6 C 0.09 3.05 2.38 45.03 0.11 3.16 16 7 H 0.02 0.85 7.12 -2.39 -0.02 0.83 16 8 N -0.68 -29.20 6.04 -472.71 -2.86 -32.06 16 9 C 0.22 11.14 2.39 44.17 0.11 11.24 16 10 H 0.00 0.08 7.16 -2.39 -0.02 0.06 16 11 C -0.16 -7.58 8.92 71.98 0.64 -6.94 16 12 C -0.51 -28.95 8.84 25.60 0.23 -28.73 16 13 H 0.05 3.03 7.81 -2.92 -0.02 3.01 16 14 C 0.01 0.47 5.30 84.66 0.45 0.92 16 15 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 16 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 C -0.14 -4.77 5.62 30.69 0.17 -4.59 16 21 C 0.07 1.92 6.84 72.02 0.49 2.42 16 22 O -0.39 -10.80 9.95 -148.98 -1.48 -12.29 16 23 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.33 13.28 8.11 -89.69 -0.73 12.55 16 31 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 32 H 0.02 1.00 7.43 -2.39 -0.02 0.98 16 33 H 0.03 1.54 8.13 -2.38 -0.02 1.52 16 34 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.05 1.98 7.49 -2.39 -0.02 1.96 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -60.91 298.12 1.51 -59.40 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.28 Total: 19.73 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 3.30 Total: -27.80 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.61 Total: -85.47 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.48 Total: -12.29 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.91 1.51 -59.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170195220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.874 kcal (2) G-P(sol) polarization free energy of solvation -60.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds