Wall clock time and date at job start Sun Mar 29 2020 21:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 H 1.09004 * 109.47949 * 304.98148 * 3 2 1 5 5 C 1.53278 * 109.45631 * 184.98367 * 3 2 1 6 6 C 1.53177 * 109.06159 * 182.44920 * 5 3 2 7 7 H 1.08998 * 109.54188 * 297.02822 * 6 5 3 8 8 N 1.46904 * 109.54177 * 176.85506 * 6 5 3 9 9 C 1.46896 * 110.99841 * 154.07158 * 8 6 5 10 10 H 1.09001 * 109.47251 * 35.08817 * 9 8 6 11 11 C 1.53005 * 109.47142 * 155.08502 * 9 8 6 12 12 C 1.50700 * 109.47321 * 275.08466 * 9 8 6 13 13 H 1.08000 * 119.99660 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00122 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99960 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99943 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47058 * 89.99865 * 16 14 12 18 18 H 1.48491 * 109.47116 * 209.99979 * 16 14 12 19 19 H 1.48495 * 109.47215 * 330.00146 * 16 14 12 20 20 C 1.53172 * 109.10877 * 56.94244 * 6 5 3 21 21 C 1.53093 * 109.16684 * 302.97365 * 20 6 5 22 22 O 1.42903 * 109.47735 * 64.99965 * 3 2 1 23 23 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47075 * 299.99909 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99912 * 1 2 3 26 26 H 1.08997 * 109.46837 * 240.00564 * 2 1 3 27 27 H 1.09000 * 109.47103 * 120.00088 * 2 1 3 28 28 H 1.09006 * 109.64030 * 62.53154 * 5 3 2 29 29 H 1.08998 * 109.50335 * 302.28626 * 5 3 2 30 30 H 1.00900 * 110.99810 * 278.02455 * 8 6 5 31 31 H 1.09001 * 109.46905 * 305.48092 * 11 9 8 32 32 H 1.09000 * 109.46884 * 65.47929 * 11 9 8 33 33 H 1.09002 * 109.47233 * 185.47801 * 11 9 8 34 34 H 0.96999 * 119.99669 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.52535 * 62.88166 * 20 6 5 36 36 H 1.09006 * 109.52283 * 183.00239 * 20 6 5 37 37 H 1.08995 * 109.48385 * 177.59483 * 21 20 6 38 38 H 1.09007 * 109.47489 * 297.62015 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5676 1.4440 -0.1256 6 6 4.0733 2.8886 -0.0630 7 1 3.6799 3.4496 -0.9107 8 7 5.5417 2.8975 -0.1068 9 6 6.0443 4.1645 -0.6545 10 1 5.3936 4.9801 -0.3393 11 6 7.4629 4.4157 -0.1393 12 6 6.0624 4.0891 -2.1595 13 1 5.7338 3.1897 -2.6591 14 6 6.4995 5.1679 -2.8986 15 7 6.9001 6.2629 -2.2902 16 14 6.5226 5.0742 -4.7641 17 1 5.2220 5.5504 -5.2998 18 1 7.6171 5.9293 -5.2891 19 1 6.7469 3.6683 -5.1864 20 6 3.5956 3.5310 1.2428 21 6 2.0686 3.4484 1.3144 22 8 1.6620 2.0816 1.2210 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8575 0.9974 -1.0767 29 1 4.0007 0.8706 0.6941 30 1 5.9317 2.7183 0.8064 31 1 7.4667 4.3735 0.9498 32 1 8.1335 3.6529 -0.5349 33 1 7.7991 5.3998 -0.4660 34 1 7.2079 7.0217 -2.8102 35 1 4.0293 2.9998 2.0901 36 1 3.9065 4.5754 1.2700 37 1 1.7259 3.8657 2.2612 38 1 1.6350 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170195223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:04 Heat of formation + Delta-G solvation = -68.429007 kcal Electronic energy + Delta-G solvation = -16557.795093 eV Core-core repulsion = 14013.258582 eV Total energy + Delta-G solvation = -2544.536511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32675 -36.06809 -33.82014 -33.14068 -30.95168 -29.57877 -27.55582 -25.13692 -24.01341 -23.09452 -21.01036 -20.14866 -19.70580 -16.27241 -16.07068 -15.78621 -14.95442 -14.49519 -14.09592 -13.71442 -13.60282 -13.51585 -13.13856 -12.71388 -12.56914 -11.70211 -11.49200 -11.37290 -11.02303 -10.92366 -10.85716 -10.73776 -10.64337 -10.51640 -10.45010 -10.07498 -9.97281 -9.70406 -9.18787 -9.03393 -8.40230 -7.20282 -5.97626 -4.00627 3.31471 3.38154 3.42908 3.98815 4.44250 4.80888 5.12203 5.19175 5.23840 5.28845 5.34024 5.44553 5.52962 5.57700 5.69494 5.84740 5.92193 5.98871 6.05368 6.14041 6.20329 6.25844 6.33810 6.43010 6.60954 6.70812 6.79421 6.98905 7.06305 7.46526 7.50400 7.74354 7.92935 8.30415 8.36927 8.76459 9.06967 9.64453 11.09177 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030790 B = 0.006852 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.178892 B = 4085.310938 C = 4539.744735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.089 3.911 4 H 0.056 0.944 5 C -0.133 4.133 6 C 0.094 3.906 7 H 0.081 0.919 8 N -0.680 5.680 9 C 0.211 3.789 10 H 0.001 0.999 11 C -0.140 4.140 12 C -0.493 4.493 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.895 3.105 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.183 4.183 21 C 0.068 3.932 22 O -0.383 6.383 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.316 0.684 31 H 0.004 0.996 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 -7.599 5.707 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.031 3.969 4 H 0.073 0.927 5 C -0.172 4.172 6 C -0.017 4.017 7 H 0.099 0.901 8 N -0.308 5.308 9 C 0.104 3.896 10 H 0.019 0.981 11 C -0.198 4.198 12 C -0.531 4.531 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.723 3.277 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.223 4.223 21 C -0.010 4.010 22 O -0.303 6.303 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.023 0.977 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.255 -7.835 5.177 13.185 hybrid contribution 0.161 0.934 -0.462 1.054 sum -9.093 -6.901 4.715 12.351 Atomic orbital electron populations 1.21721 0.95683 1.01074 1.02140 1.21530 0.96211 0.94861 1.02574 1.22219 0.94472 0.93412 0.86800 0.92650 1.22236 0.93995 0.98109 1.02841 1.21483 0.90180 0.94436 0.95604 0.90090 1.60742 1.03977 1.38861 1.27254 1.19171 0.91534 0.84233 0.94698 0.98126 1.21927 0.99390 1.03620 0.94879 1.21184 1.41814 0.99534 0.90615 0.92125 1.24963 0.95642 0.95453 0.98530 1.69896 1.44683 1.04157 1.35058 0.86549 0.77480 0.77949 0.85732 1.20896 1.21342 1.19901 1.22965 0.96670 1.02308 1.00360 1.22458 0.94232 0.82905 1.01357 1.87836 1.78690 1.24809 1.38949 0.93125 0.92110 0.93030 0.90694 0.91357 0.90561 0.91816 0.86763 0.97670 0.94528 0.89687 0.93128 0.91725 0.91055 0.89590 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.81 37.16 0.36 -1.23 16 2 C -0.11 -1.36 5.64 -26.73 -0.15 -1.51 16 3 C 0.09 1.28 2.65 -26.59 -0.07 1.21 16 4 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.13 -2.15 5.05 -26.50 -0.13 -2.28 16 6 C 0.09 1.76 2.35 -67.53 -0.16 1.60 16 7 H 0.08 1.72 7.63 -51.93 -0.40 1.33 16 8 N -0.68 -14.44 6.05 -100.76 -0.61 -15.05 16 9 C 0.21 5.29 2.43 -68.86 -0.17 5.12 16 10 H 0.00 0.03 7.24 -51.93 -0.38 -0.35 16 11 C -0.14 -3.40 8.93 37.16 0.33 -3.07 16 12 C -0.49 -13.66 8.50 -34.44 -0.29 -13.96 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 15 N -0.90 -25.76 11.38 55.43 0.63 -25.13 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.18 -2.99 5.39 -26.59 -0.14 -3.14 16 21 C 0.07 0.98 6.84 37.21 0.25 1.24 16 22 O -0.38 -5.80 9.94 -35.23 -0.35 -6.15 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.32 6.20 7.97 -39.29 -0.31 5.89 16 31 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 2.26 6.24 -51.93 -0.32 1.94 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.07 1.24 7.57 -51.93 -0.39 0.84 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -28.53 299.22 -7.92 -36.45 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.82 Total: 3.38 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.26 Total: -14.60 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.02 Total: -40.18 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.35 Total: -6.15 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.53 -7.92 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170195223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.982 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds