Wall clock time and date at job start Sun Mar 29 2020 21:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 H 1.09004 * 109.47949 * 304.98148 * 3 2 1 5 5 C 1.53278 * 109.45631 * 184.98367 * 3 2 1 6 6 C 1.53177 * 109.06159 * 182.44920 * 5 3 2 7 7 H 1.08998 * 109.54188 * 297.02822 * 6 5 3 8 8 N 1.46904 * 109.54177 * 176.85506 * 6 5 3 9 9 C 1.46896 * 110.99841 * 154.07158 * 8 6 5 10 10 H 1.09001 * 109.47251 * 35.08817 * 9 8 6 11 11 C 1.53005 * 109.47142 * 155.08502 * 9 8 6 12 12 C 1.50700 * 109.47321 * 275.08466 * 9 8 6 13 13 H 1.08000 * 119.99660 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00122 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99960 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99943 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47058 * 89.99865 * 16 14 12 18 18 H 1.48491 * 109.47116 * 209.99979 * 16 14 12 19 19 H 1.48495 * 109.47215 * 330.00146 * 16 14 12 20 20 C 1.53172 * 109.10877 * 56.94244 * 6 5 3 21 21 C 1.53093 * 109.16684 * 302.97365 * 20 6 5 22 22 O 1.42903 * 109.47735 * 64.99965 * 3 2 1 23 23 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47075 * 299.99909 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99912 * 1 2 3 26 26 H 1.08997 * 109.46837 * 240.00564 * 2 1 3 27 27 H 1.09000 * 109.47103 * 120.00088 * 2 1 3 28 28 H 1.09006 * 109.64030 * 62.53154 * 5 3 2 29 29 H 1.08998 * 109.50335 * 302.28626 * 5 3 2 30 30 H 1.00900 * 110.99810 * 278.02455 * 8 6 5 31 31 H 1.09001 * 109.46905 * 305.48092 * 11 9 8 32 32 H 1.09000 * 109.46884 * 65.47929 * 11 9 8 33 33 H 1.09002 * 109.47233 * 185.47801 * 11 9 8 34 34 H 0.96999 * 119.99669 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.52535 * 62.88166 * 20 6 5 36 36 H 1.09006 * 109.52283 * 183.00239 * 20 6 5 37 37 H 1.08995 * 109.48385 * 177.59483 * 21 20 6 38 38 H 1.09007 * 109.47489 * 297.62015 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5676 1.4440 -0.1256 6 6 4.0733 2.8886 -0.0630 7 1 3.6799 3.4496 -0.9107 8 7 5.5417 2.8975 -0.1068 9 6 6.0443 4.1645 -0.6545 10 1 5.3936 4.9801 -0.3393 11 6 7.4629 4.4157 -0.1393 12 6 6.0624 4.0891 -2.1595 13 1 5.7338 3.1897 -2.6591 14 6 6.4995 5.1679 -2.8986 15 7 6.9001 6.2629 -2.2902 16 14 6.5226 5.0742 -4.7641 17 1 5.2220 5.5504 -5.2998 18 1 7.6171 5.9293 -5.2891 19 1 6.7469 3.6683 -5.1864 20 6 3.5956 3.5310 1.2428 21 6 2.0686 3.4484 1.3144 22 8 1.6620 2.0816 1.2210 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8575 0.9974 -1.0767 29 1 4.0007 0.8706 0.6941 30 1 5.9317 2.7183 0.8064 31 1 7.4667 4.3735 0.9498 32 1 8.1335 3.6529 -0.5349 33 1 7.7991 5.3998 -0.4660 34 1 7.2079 7.0217 -2.8102 35 1 4.0293 2.9998 2.0901 36 1 3.9065 4.5754 1.2700 37 1 1.7259 3.8657 2.2612 38 1 1.6350 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170195223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:04 Heat of formation + Delta-G solvation = -86.440691 kcal Electronic energy + Delta-G solvation = -16558.576138 eV Core-core repulsion = 14013.258582 eV Total energy + Delta-G solvation = -2545.317556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61089 -37.75129 -35.04768 -34.81369 -32.77475 -30.71900 -29.26506 -27.26844 -25.20923 -24.38434 -22.40527 -21.81414 -21.13075 -18.26124 -17.36198 -17.06767 -16.85200 -15.91721 -15.65301 -15.20177 -15.06887 -14.63426 -14.48172 -14.43388 -13.87908 -13.36132 -12.87105 -12.74792 -12.64871 -12.61563 -12.41831 -12.22817 -12.10432 -12.03682 -12.00032 -11.75282 -11.67466 -11.09499 -11.04996 -10.53065 -10.42859 -8.98311 -8.10355 -6.21315 1.39394 1.40770 1.51554 2.42031 2.84856 3.16447 3.45445 3.85224 3.94513 4.01234 4.20246 4.24744 4.33149 4.44781 4.53316 4.60437 4.76166 4.80029 4.84950 4.88087 4.94912 4.95520 5.04611 5.13996 5.15139 5.24157 5.26298 5.34454 5.48744 5.50156 5.70478 5.83359 6.30058 6.30878 6.47543 6.91710 6.97309 7.48017 8.94569 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030790 B = 0.006852 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.178892 B = 4085.310938 C = 4539.744735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.090 3.910 4 H 0.050 0.950 5 C -0.124 4.124 6 C 0.092 3.908 7 H 0.047 0.953 8 N -0.681 5.681 9 C 0.217 3.783 10 H -0.028 1.028 11 C -0.129 4.129 12 C -0.511 4.511 13 H 0.049 0.951 14 C 0.009 3.991 15 N -0.922 5.922 16 Si 0.956 3.044 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.271 1.271 20 C -0.175 4.175 21 C 0.070 3.930 22 O -0.385 6.385 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.327 0.673 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 -8.762 5.918 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C 0.032 3.968 4 H 0.068 0.932 5 C -0.163 4.163 6 C -0.019 4.019 7 H 0.066 0.934 8 N -0.311 5.311 9 C 0.109 3.891 10 H -0.011 1.011 11 C -0.188 4.188 12 C -0.549 4.549 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.215 4.215 21 C -0.007 4.007 22 O -0.305 6.305 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.080 -9.013 5.401 14.560 hybrid contribution 0.408 1.296 -0.498 1.447 sum -9.672 -7.716 4.903 13.309 Atomic orbital electron populations 1.21694 0.94626 1.02191 1.01789 1.21543 0.97104 0.92946 1.03281 1.22280 0.93007 0.95027 0.86511 0.93213 1.22146 0.95460 0.95958 1.02687 1.21493 0.88575 0.96113 0.95696 0.93415 1.60648 1.05785 1.36628 1.28029 1.18942 0.91532 0.84911 0.93761 1.01058 1.21752 0.98586 1.01857 0.96596 1.21420 1.42031 0.99259 0.92226 0.93283 1.25701 0.95269 0.95114 1.02868 1.70015 1.45056 1.04616 1.36559 0.85584 0.77685 0.78013 0.80525 1.20288 1.20735 1.19553 1.22844 0.98329 1.01168 0.99127 1.22513 0.92591 0.82932 1.02705 1.87850 1.78525 1.24928 1.39158 0.91305 0.92876 0.92966 0.89629 0.91013 0.91329 0.91106 0.85561 0.94884 0.94952 0.92199 0.93029 0.90639 0.92541 0.87007 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.81 71.98 0.71 -2.07 16 2 C -0.11 -2.41 5.64 30.60 0.17 -2.23 16 3 C 0.09 2.45 2.65 30.69 0.08 2.53 16 4 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 5 C -0.12 -3.88 5.05 30.75 0.16 -3.73 16 6 C 0.09 3.44 2.35 45.03 0.11 3.55 16 7 H 0.05 2.10 7.63 -2.39 -0.02 2.08 16 8 N -0.68 -28.98 6.05 -472.70 -2.86 -31.84 16 9 C 0.22 11.06 2.43 44.17 0.11 11.16 16 10 H -0.03 -1.58 7.24 -2.39 -0.02 -1.59 16 11 C -0.13 -6.32 8.93 71.98 0.64 -5.67 16 12 C -0.51 -28.79 8.50 25.60 0.22 -28.57 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.01 0.48 5.30 84.65 0.45 0.93 16 15 N -0.92 -53.57 11.38 21.45 0.24 -53.32 16 16 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 C -0.18 -5.60 5.39 30.68 0.17 -5.44 16 21 C 0.07 1.92 6.84 72.01 0.49 2.41 16 22 O -0.39 -10.91 9.94 -148.98 -1.48 -12.39 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.09 7.82 -2.39 -0.02 1.08 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.33 12.55 7.97 -89.69 -0.71 11.84 16 31 H 0.03 1.37 8.01 -2.39 -0.02 1.35 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 3.22 6.24 -2.39 -0.01 3.21 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 36 H 0.06 1.97 7.57 -2.38 -0.02 1.95 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -60.58 299.22 1.52 -59.07 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.29 Total: 19.13 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.30 Total: -27.14 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.62 Total: -85.16 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.48 Total: -12.39 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.58 1.52 -59.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170195223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.373 kcal (2) G-P(sol) polarization free energy of solvation -60.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds