Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 H 1.09004 * 109.49341 * 305.02752 * 3 2 1 5 5 C 1.53084 * 109.48091 * 184.99982 * 3 2 1 6 6 C 1.53185 * 109.16692 * 182.41336 * 5 3 2 7 7 H 1.09003 * 109.53782 * 297.02397 * 6 5 3 8 8 N 1.46895 * 109.54554 * 176.84673 * 6 5 3 9 9 C 1.46904 * 111.00270 * 56.04292 * 8 6 5 10 10 C 1.46904 * 110.99959 * 179.97438 * 8 6 5 11 11 C 1.50697 * 109.46891 * 170.00060 * 10 8 6 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 10 8 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00035 * 179.72339 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 359.72191 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.53177 * 109.03687 * 56.97298 * 6 5 3 20 20 C 1.53092 * 109.16600 * 303.02605 * 19 6 5 21 21 O 1.42904 * 109.41614 * 57.60785 * 20 19 6 22 22 H 1.09002 * 109.46958 * 300.00346 * 1 2 3 23 23 H 1.09008 * 109.46741 * 59.99829 * 1 2 3 24 24 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46563 * 239.99932 * 2 1 3 26 26 H 1.08994 * 109.46592 * 120.00239 * 2 1 3 27 27 H 1.08993 * 109.52790 * 62.50154 * 5 3 2 28 28 H 1.09003 * 109.57257 * 302.34280 * 5 3 2 29 29 H 1.08997 * 109.47233 * 183.95247 * 9 8 6 30 30 H 1.08998 * 109.46536 * 303.95681 * 9 8 6 31 31 H 1.08996 * 109.46977 * 63.94924 * 9 8 6 32 32 H 1.08998 * 109.47046 * 49.99561 * 10 8 6 33 33 H 1.09001 * 109.47014 * 289.99762 * 10 8 6 34 34 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.51862 * 62.93525 * 19 6 5 36 36 H 1.09000 * 109.52090 * 183.11372 * 19 6 5 37 37 H 1.08999 * 109.47536 * 297.62487 * 20 19 6 38 38 H 1.08994 * 109.47640 * 177.59142 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9820 -0.8414 5 6 3.5657 1.4445 -0.1258 6 6 4.0735 2.8884 -0.0644 7 1 3.6805 3.4494 -0.9124 8 7 5.5418 2.8953 -0.1085 9 6 6.0360 2.1932 -1.3005 10 6 6.0637 4.2674 -0.0520 11 6 7.5568 4.2289 0.1480 12 1 8.0665 3.2803 0.2298 13 6 8.2715 5.4050 0.2327 14 7 9.5739 5.3716 0.4126 15 14 7.3899 7.0459 0.0918 16 1 6.9651 7.4970 1.4414 17 1 8.3079 8.0518 -0.5002 18 1 6.1958 6.8932 -0.7777 19 6 3.5969 3.5305 1.2421 20 6 2.0700 3.4479 1.3150 21 8 1.6632 2.0812 1.2216 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8534 0.9973 -1.0772 28 1 4.0004 0.8705 0.6927 29 1 7.1249 2.1521 -1.2725 30 1 5.6344 1.1801 -1.3179 31 1 5.7154 2.7266 -2.1953 32 1 5.5994 4.7988 0.7787 33 1 5.8352 4.7817 -0.9854 34 1 10.0767 6.1990 0.4718 35 1 4.0314 2.9990 2.0888 36 1 3.9070 4.5751 1.2689 37 1 1.6357 4.0136 0.4908 38 1 1.7283 3.8649 2.2623 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170204823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = -53.605773 kcal Electronic energy + Delta-G solvation = -16595.095386 eV Core-core repulsion = 14051.201659 eV Total energy + Delta-G solvation = -2543.893727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59555 -36.66615 -33.97879 -32.77471 -31.38818 -29.92152 -27.77279 -25.72184 -24.16250 -22.65060 -21.46823 -20.56021 -19.35005 -16.94214 -16.33803 -15.90781 -14.99097 -14.61980 -14.42619 -13.96779 -13.67660 -13.63355 -13.12426 -12.96874 -12.75944 -12.28584 -11.82862 -11.74483 -11.45134 -11.22917 -11.07223 -10.91470 -10.84832 -10.68261 -10.44692 -10.11249 -9.92040 -9.82851 -9.32297 -9.24845 -8.56701 -7.37404 -6.05777 -4.02640 3.26532 3.34178 3.35634 3.86143 4.40744 4.54860 4.81903 4.98877 5.12429 5.15669 5.24945 5.29566 5.37185 5.42537 5.52911 5.62132 5.76785 5.80867 5.86754 5.87071 6.05355 6.09672 6.12038 6.18402 6.24683 6.31746 6.44247 6.60838 6.71584 6.86998 6.98779 7.35808 7.60056 7.90624 8.05760 8.66072 9.03111 9.56071 11.07461 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046358 B = 0.006366 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.847190 B = 4397.034729 C = 4788.033206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.142 4.142 6 C 0.082 3.918 7 H 0.027 0.973 8 N -0.526 5.526 9 C 0.035 3.965 10 C 0.159 3.841 11 C -0.508 4.508 12 H 0.080 0.920 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.269 1.269 19 C -0.150 4.150 20 C 0.065 3.935 21 O -0.380 6.380 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.028 0.972 33 H -0.014 1.014 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.614 -6.803 -1.681 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.180 4.180 6 C -0.027 4.027 7 H 0.045 0.955 8 N -0.250 5.250 9 C -0.114 4.114 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.188 4.188 20 C -0.012 4.012 21 O -0.299 6.299 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.004 0.996 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.366 -7.026 -1.107 17.845 hybrid contribution -0.338 1.682 -1.021 1.996 sum -16.705 -5.344 -2.128 17.667 Atomic orbital electron populations 1.21720 0.95540 1.01219 1.02134 1.21530 0.96343 0.94648 1.02726 1.22131 0.93877 0.93660 0.86937 0.92995 1.22334 0.94962 0.97629 1.03112 1.21584 0.90281 0.94829 0.96021 0.95482 1.62009 1.04563 1.19283 1.39105 1.22281 1.02249 0.96713 0.90122 1.20249 0.96914 0.84662 0.94934 1.21041 0.89655 0.94867 1.49058 0.90150 1.24896 0.94731 0.98793 0.94896 1.69893 1.06126 1.27604 1.50350 0.86892 0.79939 0.84365 0.78768 1.20080 1.21157 1.19373 1.22300 0.95171 1.02229 0.99065 1.22569 0.94331 0.82768 1.01530 1.87868 1.78604 1.24892 1.38566 0.91972 0.93149 0.92988 0.90806 0.91019 0.91110 0.90153 0.90266 0.93034 0.97136 0.95410 0.99643 0.92674 0.89994 0.90604 0.93786 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.81 37.16 0.36 -1.05 16 2 C -0.12 -1.22 5.64 -26.73 -0.15 -1.37 16 3 C 0.09 1.18 2.64 -26.69 -0.07 1.11 16 4 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.14 -2.08 4.23 -26.59 -0.11 -2.19 16 6 C 0.08 1.43 2.03 -67.53 -0.14 1.29 16 7 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 8 N -0.53 -11.14 4.62 -236.11 -1.09 -12.24 16 9 C 0.03 0.67 8.99 60.07 0.54 1.21 16 10 C 0.16 3.88 3.61 -4.98 -0.02 3.86 16 11 C -0.51 -14.54 9.06 -34.44 -0.31 -14.85 16 12 H 0.08 2.50 7.36 -52.49 -0.39 2.12 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 15 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 19 C -0.15 -2.45 5.13 -26.59 -0.14 -2.59 16 20 C 0.07 0.88 6.84 37.20 0.25 1.13 16 21 O -0.38 -5.40 9.94 -35.23 -0.35 -5.75 16 22 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 23 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.96 6.46 -51.93 -0.34 0.63 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.70 6.86 -51.93 -0.36 1.34 16 30 H 0.05 0.84 6.09 -51.93 -0.32 0.53 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.68 5.35 -51.93 -0.28 0.40 16 33 H -0.01 -0.35 7.17 -51.93 -0.37 -0.73 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.30 6.39 -51.93 -0.33 0.97 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -30.57 291.59 -7.42 -37.99 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.60 Total: -2.80 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 0.12 Total: -11.56 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.32 Total: -39.17 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.35 Total: -5.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.57 -7.42 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.614 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds