Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47271 * 2 1 4 4 H 1.09004 * 109.49341 * 305.02752 * 3 2 1 5 5 C 1.53084 * 109.48091 * 184.99982 * 3 2 1 6 6 C 1.53185 * 109.16692 * 182.41336 * 5 3 2 7 7 H 1.09003 * 109.53782 * 297.02397 * 6 5 3 8 8 N 1.46895 * 109.54554 * 176.84673 * 6 5 3 9 9 C 1.46904 * 111.00270 * 56.04292 * 8 6 5 10 10 C 1.46904 * 110.99959 * 179.97438 * 8 6 5 11 11 C 1.50697 * 109.46891 * 170.00060 * 10 8 6 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 10 8 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00035 * 179.72339 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 359.72191 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.53177 * 109.03687 * 56.97298 * 6 5 3 20 20 C 1.53092 * 109.16600 * 303.02605 * 19 6 5 21 21 O 1.42904 * 109.41614 * 57.60785 * 20 19 6 22 22 H 1.09002 * 109.46958 * 300.00346 * 1 2 3 23 23 H 1.09008 * 109.46741 * 59.99829 * 1 2 3 24 24 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46563 * 239.99932 * 2 1 3 26 26 H 1.08994 * 109.46592 * 120.00239 * 2 1 3 27 27 H 1.08993 * 109.52790 * 62.50154 * 5 3 2 28 28 H 1.09003 * 109.57257 * 302.34280 * 5 3 2 29 29 H 1.08997 * 109.47233 * 183.95247 * 9 8 6 30 30 H 1.08998 * 109.46536 * 303.95681 * 9 8 6 31 31 H 1.08996 * 109.46977 * 63.94924 * 9 8 6 32 32 H 1.08998 * 109.47046 * 49.99561 * 10 8 6 33 33 H 1.09001 * 109.47014 * 289.99762 * 10 8 6 34 34 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.51862 * 62.93525 * 19 6 5 36 36 H 1.09000 * 109.52090 * 183.11372 * 19 6 5 37 37 H 1.08999 * 109.47536 * 297.62487 * 20 19 6 38 38 H 1.08994 * 109.47640 * 177.59142 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9820 -0.8414 5 6 3.5657 1.4445 -0.1258 6 6 4.0735 2.8884 -0.0644 7 1 3.6805 3.4494 -0.9124 8 7 5.5418 2.8953 -0.1085 9 6 6.0360 2.1932 -1.3005 10 6 6.0637 4.2674 -0.0520 11 6 7.5568 4.2289 0.1480 12 1 8.0665 3.2803 0.2298 13 6 8.2715 5.4050 0.2327 14 7 9.5739 5.3716 0.4126 15 14 7.3899 7.0459 0.0918 16 1 6.9651 7.4970 1.4414 17 1 8.3079 8.0518 -0.5002 18 1 6.1958 6.8932 -0.7777 19 6 3.5969 3.5305 1.2421 20 6 2.0700 3.4479 1.3150 21 8 1.6632 2.0812 1.2216 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8534 0.9973 -1.0772 28 1 4.0004 0.8705 0.6927 29 1 7.1249 2.1521 -1.2725 30 1 5.6344 1.1801 -1.3179 31 1 5.7154 2.7266 -2.1953 32 1 5.5994 4.7988 0.7787 33 1 5.8352 4.7817 -0.9854 34 1 10.0767 6.1990 0.4718 35 1 4.0314 2.9990 2.0888 36 1 3.9070 4.5751 1.2689 37 1 1.6357 4.0136 0.4908 38 1 1.7283 3.8649 2.2623 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170204823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = -74.509641 kcal Electronic energy + Delta-G solvation = -16596.001846 eV Core-core repulsion = 14051.201659 eV Total energy + Delta-G solvation = -2544.800187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79135 -38.16027 -34.89887 -34.83392 -32.92907 -31.09267 -29.56110 -27.21297 -25.42889 -23.97516 -22.91047 -21.77296 -20.78763 -19.03582 -17.37192 -17.21454 -16.63547 -16.20631 -15.71750 -15.50674 -14.99492 -14.65916 -14.52684 -14.49888 -14.11747 -13.92369 -13.31305 -12.95434 -12.80667 -12.64984 -12.55905 -12.25482 -12.11749 -11.95685 -11.89994 -11.74549 -11.48659 -11.23562 -11.11420 -10.78242 -10.45423 -9.05565 -8.30237 -6.33467 1.32068 1.33532 1.43995 2.32090 2.84854 3.02629 3.13428 3.68286 3.90384 3.98024 4.17816 4.21075 4.23800 4.37481 4.44183 4.51095 4.55919 4.65662 4.73225 4.76452 4.82851 4.89698 4.94308 5.00370 5.12884 5.14510 5.15692 5.21170 5.25223 5.38267 5.49519 5.54140 5.97448 6.30922 6.36292 6.64245 6.72696 7.29978 8.86516 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046358 B = 0.006366 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.847190 B = 4397.034729 C = 4788.033206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.093 3.907 4 H 0.062 0.938 5 C -0.135 4.135 6 C 0.078 3.922 7 H 0.031 0.969 8 N -0.544 5.544 9 C 0.039 3.961 10 C 0.170 3.830 11 C -0.517 4.517 12 H 0.037 0.963 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.946 3.054 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.253 1.253 19 C -0.150 4.150 20 C 0.071 3.929 21 O -0.389 6.389 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.017 0.983 32 H 0.034 0.966 33 H -0.017 1.017 34 H 0.267 0.733 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -6.468 -2.265 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.035 3.965 4 H 0.080 0.920 5 C -0.173 4.173 6 C -0.030 4.030 7 H 0.049 0.951 8 N -0.268 5.268 9 C -0.109 4.109 10 C 0.043 3.957 11 C -0.556 4.556 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.769 3.231 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.177 1.177 19 C -0.188 4.188 20 C -0.006 4.006 21 O -0.309 6.309 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.000 1.000 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.137 -6.715 -1.692 20.351 hybrid contribution 0.571 1.465 -0.833 1.780 sum -18.566 -5.250 -2.525 19.458 Atomic orbital electron populations 1.21690 0.94567 1.02131 1.01906 1.21556 0.97157 0.93130 1.03242 1.22249 0.92346 0.95110 0.86841 0.91975 1.22292 0.96405 0.95373 1.03228 1.21738 0.87585 0.97032 0.96659 0.95098 1.61921 1.07356 1.17371 1.40174 1.22236 1.00402 0.98489 0.89814 1.19985 0.94157 0.86831 0.94711 1.21271 0.92075 0.93345 1.48876 0.94511 1.25843 0.95435 1.03243 0.94359 1.70049 1.08063 1.28987 1.51751 0.85740 0.79059 0.78748 0.79582 1.18723 1.20582 1.17705 1.22295 0.97509 1.01143 0.97813 1.22594 0.91927 0.82902 1.03218 1.87878 1.78429 1.25214 1.39364 0.93083 0.92463 0.91576 0.89174 0.91672 0.89871 0.91491 0.93463 0.89776 0.96495 0.94819 0.99973 0.92392 0.91738 0.91571 0.92340 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.81 71.98 0.71 -1.65 16 2 C -0.11 -2.09 5.64 30.59 0.17 -1.92 16 3 C 0.09 2.12 2.64 30.62 0.08 2.20 16 4 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 5 C -0.14 -3.66 4.23 30.68 0.13 -3.53 16 6 C 0.08 2.61 2.03 45.04 0.09 2.70 16 7 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 8 N -0.54 -22.95 4.62 -900.90 -4.17 -27.12 16 9 C 0.04 1.49 8.99 127.69 1.15 2.64 16 10 C 0.17 8.31 3.61 85.56 0.31 8.62 16 11 C -0.52 -30.48 9.06 25.60 0.23 -30.25 16 12 H 0.04 2.42 7.36 -2.92 -0.02 2.40 16 13 C 0.01 0.50 5.47 84.66 0.46 0.96 16 14 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 15 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 19 C -0.15 -4.70 5.13 30.68 0.16 -4.54 16 20 C 0.07 1.73 6.84 72.01 0.49 2.22 16 21 O -0.39 -10.10 9.94 -148.98 -1.48 -11.58 16 22 H 0.05 0.94 7.82 -2.39 -0.02 0.92 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 2.03 6.46 -2.39 -0.02 2.01 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 2.10 6.86 -2.39 -0.02 2.08 16 30 H 0.08 2.64 6.09 -2.39 -0.01 2.63 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.03 1.61 5.35 -2.39 -0.01 1.60 16 33 H -0.02 -0.85 7.17 -2.39 -0.02 -0.87 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 2.18 6.39 -2.39 -0.02 2.16 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -66.90 291.59 1.47 -65.43 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.95 Total: 9.20 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.98 Total: -22.56 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -3.87 Total: -86.67 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.48 Total: -11.58 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -66.90 1.47 -65.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.075 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds